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| author | Navan Chauhan <navanchauhan@gmail.com> | 2020-08-30 22:49:17 +0530 |
|---|---|---|
| committer | Navan Chauhan <navanchauhan@gmail.com> | 2020-08-30 22:49:17 +0530 |
| commit | be76912df2bcc52897308e0c41fb75277d86a983 (patch) | |
| tree | 80d61be6aca0ab7af215bfb3c483ad3e21d2fda9 | |
| parent | 422a7b2e721b1afb475db6ab98416e86258e46eb (diff) | |
added os.system call
| -rw-r--r-- | app/dock-single.py | 3 |
1 files changed, 2 insertions, 1 deletions
diff --git a/app/dock-single.py b/app/dock-single.py index 9f603e5..281cad3 100644 --- a/app/dock-single.py +++ b/app/dock-single.py @@ -97,7 +97,7 @@ def get3DModel(protein,ligand): cmd = session.cmd cmd.load(protein,"target") cmd.load(ligand,"ligand") - cmd.save("model.gltf") + cmd.save("model.dae") session.stop() def removeWater(pdbpath): @@ -242,6 +242,7 @@ with tempfile.TemporaryDirectory() as directory: make_archive(zi, 'zip', directory) copyfile("report.pdf",os.path.join(reportDirectory,(str(jobID)+".pdf"))) get3DModel(pdbpath,"%s_out.pdbqt"%(records[4])) + os.system("collada2gltf -i model.dae -o model.gltf") copyfile("model.gltf",os.path.join(modelDirectory,(str(jobID)+".gltf"))) os.system("docker run -it --rm -v $(PWD):/usr/app leon/usd-from-gltf:latest model.gltf model.usdz") copyfile("model.usdz",os.path.join(modelDirectory,(str(jobID)+".usdz"))) |