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authorNavan Chauhan <navanchauhan@gmail.com>2020-07-07 12:40:28 +0530
committerNavan Chauhan <navanchauhan@gmail.com>2020-07-07 12:40:28 +0530
commit3b6482cb0ab7eb51756213ccf7b7c8822fbda3d5 (patch)
treec3b3f6e35cb86e9c1998a8e969c1db77233fe309 /tests/backendTest.py
parentbb730182584b09233ae955db41385864f087a4cb (diff)
Fixed 10 Anti-Pattern issues
Diffstat (limited to 'tests/backendTest.py')
-rw-r--r--tests/backendTest.py19
1 files changed, 8 insertions, 11 deletions
diff --git a/tests/backendTest.py b/tests/backendTest.py
index 7db0d8c..33b6019 100644
--- a/tests/backendTest.py
+++ b/tests/backendTest.py
@@ -27,9 +27,9 @@ def email(compressedFile):
msg.attach(MIMEText(body, 'plain'))
filename = "Curie_Web_Results_Job_ID_" + str(jobID) + ".zip"
- attachment = open((str(compressedFile) + ".zip"), "rb")
p = MIMEBase('application', 'octet-stream')
- p.set_payload((attachment).read())
+ with open((str(zi) + ".zip"), "rb") as attachment:
+ p.set_payload((attachment).read())
encoders.encode_base64(p)
p.add_header('Content-Disposition', "attachment; filename= %s" % filename)
msg.attach(p)
@@ -79,15 +79,12 @@ from shutil import make_archive
with tempfile.TemporaryDirectory() as directory:
print('The created temporary directory is %s' % directory)
os.chdir(directory)
- file = open(receptor_name,"wb")
- file.write(targetB)
- file.close()
- file = open(ligand_name,"wb")
- file.write(ligandB)
- file.close()
- file = open("config.txt","wb")
- file.write(configB)
- file.close()
+ with open(receptor_name,"wb") as file:
+ file.write(targetB)
+ with open(ligand_name,"wb") as file:
+ file.write(ligandB)
+ with open("config.txt","wb") as file:
+ file.write(configB)
os.system("docker run --rm -v ${PWD}:/results -w /results -u $(id -u ${USER}):$(id -g ${USER}) navanchauhan/curie-cli -r %s -l %s -c config.txt -dpi" % (receptor_name,ligand_name))
z = "Curie_Web_Result_"+str(jobID)
zi = os.path.join(f,z)