diff options
Diffstat (limited to 'tests/dbTestFiller.py')
-rw-r--r-- | tests/dbTestFiller.py | 55 |
1 files changed, 12 insertions, 43 deletions
diff --git a/tests/dbTestFiller.py b/tests/dbTestFiller.py index e56ea5c..02d51de 100644 --- a/tests/dbTestFiller.py +++ b/tests/dbTestFiller.py @@ -1,30 +1,14 @@ import mysql.connector as con - -debug = False -host = "navanspi.duckdns.org" -done = 1 - -if debug: - host = "192.168.1.6" - done = 0 - -mycon = con.connect(host=host,user="curieweb",password="curie-web-russian-54",port=3306,database="curie") -mycursor = mycon.cursor() - +import configparser +config = configparser.ConfigParser() +config.read('config.ini') try: - mycursor.execute("create table curieweb ( id varchar(16) primary key, email nvarchar(255) NOT NULL, protein LONGBLOB NOT NULL, protein_name VARCHAR(255), ligand_pdbqt LONGBLOB, ligand_smile VARCHAR(255), ligand_name VARCHAR(255), config LONGBLOB NOT NULL, date DATE, description VARCHAR(255), done TINYINT DEFAULT 0)") -except con.ProgrammingError: - print("Table Already Exists!") - -from random import choice, shuffle -from string import digits, ascii_lowercase - -def gen_word(N, min_N_dig, min_N_low): - choose_from = [digits]*min_N_dig + [ascii_lowercase]*min_N_low - choose_from.extend([digits + ascii_lowercase] * (N-min_N_low-min_N_dig)) - chars = [choice(bet) for bet in choose_from] - shuffle(chars) - return ''.join(chars) + config['DATABASE'] +except KeyError: + config.read("../config.ini") +mycon = con.connect(host=config['DATABASE']['HOST'],user=config['DATABASE']['USER'],password=config['DATABASE']['PASSWORD'],port=config['DATABASE']['PORT'],database=config['DATABASE']['NAME']) +mycursor = mycon.cursor() +done = 1 def convertToBinaryData(filename): with open(filename, 'rb') as file: @@ -36,27 +20,12 @@ receptor = convertToBinaryData("./files/6LU7.pdbqt") config = convertToBinaryData("./files/6LU7.txt") ligandName = "Eucalyptol" receptorName = "6LU7" - sqlQuery = "insert into curieweb (id, email, protein, protein_name, ligand_pdbqt, ligand_name,date, config,done) values (%s,%s,%s,%s,%s,%s,CURDATE(),%s,%s) " - -jobID = gen_word(16, 1, 1) -print("Succesfuly submitted Job ID:",jobID) +jobID = "l9xo2isr98oepcia" insert_tuple = (jobID,"b5bmf.{curie-gh-ci}@inbox.testmail.app",receptor,receptorName,ligand,ligandName,config,done) +mycursor.execute(sqlQuery,insert_tuple) +print("Succesfuly submitted Job ID:",jobID) -try: - mycursor.execute(sqlQuery,insert_tuple) -except con.IntegrityError: - print("Oops, Collision occured. Generating new Job ID and trying again.") - jobID = gen_word(16, 1, 1) - insert_tuple = (jobID,"b5bmf.{curie-gh-ci}@inbox.testmail.app",receptor,receptorName,ligand,ligandName,config,done) - mycursor.execute(sqlQuery,insert_tuple) - -print("Removing Test Query") - -q = 'delete from curieweb where id="%s"' % (jobID) -mycursor.execute(q) mycon.commit() - -print("Database working perfectly") |