From 8ec4944df451e39a289b8f679edc8a9096299c0f Mon Sep 17 00:00:00 2001
From: Navan Chauhan <navanchauhan@gmail.com>
Date: Thu, 17 Sep 2020 00:01:58 +0530
Subject: refactored names for docking

---
 app/templates/base.html               |  8 ++---
 app/templates/dock_automatic.html     | 43 ++++++++++++++++++++++
 app/templates/dock_manual.html        | 67 +++++++++++++++++++++++++++++++++++
 app/templates/dock_upload.html        | 67 -----------------------------------
 app/templates/dock_upload_single.html | 43 ----------------------
 app/templates/home.html               |  4 +--
 app/views.py                          | 12 +++----
 7 files changed, 122 insertions(+), 122 deletions(-)
 create mode 100644 app/templates/dock_automatic.html
 create mode 100644 app/templates/dock_manual.html
 delete mode 100644 app/templates/dock_upload.html
 delete mode 100644 app/templates/dock_upload_single.html

diff --git a/app/templates/base.html b/app/templates/base.html
index f92d59d..d86facc 100644
--- a/app/templates/base.html
+++ b/app/templates/base.html
@@ -34,8 +34,8 @@
               Dock and Report
             </a>
             <div class="dropdown-menu" aria-labelledby="navbarDropdown">
-              <a class="dropdown-item" href="{{ url_for('dock_upload') }}">Automatic</a>
-              <a class="dropdown-item" href="{{ url_for('dock_upload_single') }}">Manual</a>
+              <a class="dropdown-item" href="{{ url_for('dock_manual') }}">Automatic</a>
+              <a class="dropdown-item" href="{{ url_for('dock_automatic') }}">Manual</a>
             </div>
           </li>
           <li class="{{ 'nav-item active' if active_page == 'generate' else 'nav-item' }}">
@@ -86,8 +86,8 @@
                   <div class="col-sm-6 col-md-3 item">
                       <h3>Features</h3>
                       <ul>
-                          <li><a href="{{ url_for('dock_upload') }}">Dock (Manual)</a></li>
-                          <li><a href="{{ url_for('dock_upload_single') }}">Dock (Automatic)</a></li>
+                          <li><a href="{{ url_for('dock_manual') }}">Dock (Manual)</a></li>
+                          <li><a href="{{ url_for('dock_automatic') }}">Dock (Automatic)</a></li>
                           <li><a href="{{ url_for('pubmed') }}">PubMed Search</a></li>
                       </ul>
                   </div>
diff --git a/app/templates/dock_automatic.html b/app/templates/dock_automatic.html
new file mode 100644
index 0000000..382948f
--- /dev/null
+++ b/app/templates/dock_automatic.html
@@ -0,0 +1,43 @@
+{% extends 'base.html' %}
+{% set active_page = "dock" %}
+{% block main %}
+    <h2>Enter Your Configuration</h2>
+    <form action="{{ url_for('dock_automatic') }}" method="post" enctype="multipart/form-data">
+        {% include 'flash_messages.html' %}
+        {{ form.csrf_token }}
+        <div class="form-group">
+            {{ form.description.label }}
+            {{ form.description(class="form-control") }}
+        </div>
+        <div class="form-row">
+            <div class="col">
+            {{ form.pdbID.label }}
+            {{ form.pdbID(class="form-control")}}
+            </div>
+            <div class="col">
+                {{ form.smiles.label }}
+                {{ form.smiles(class="form-control")}}
+            </div>
+            <div class="col">
+                {{ form.name.label }}
+                {{ form.name(class="form-control")}}
+            </div>
+        </div>
+        <div class="form-group">
+            {{ form.email.label }}
+            {{ form.email(class="form-control") }}
+        </div>
+
+        <button class="btn btn-primary">Upload</button>
+    </form>
+    <br>
+    <section>
+        <style>
+            #discovery{
+                height: 40vh;
+            }
+        </style>
+        <div id="discovery"></div>
+        <script src="{{url_for('static',filename='js/discovery.js')}}"></script>
+    </section>
+{% endblock %}
\ No newline at end of file
diff --git a/app/templates/dock_manual.html b/app/templates/dock_manual.html
new file mode 100644
index 0000000..b549628
--- /dev/null
+++ b/app/templates/dock_manual.html
@@ -0,0 +1,67 @@
+{% extends 'base.html' %}
+{% set active_page = "dock" %}
+{% block main %}
+    <h2>Enter Your Configuration</h2>
+    <form action="{{ url_for('dock_manual') }}" method="post" enctype="multipart/form-data">
+        {% include 'flash_messages.html' %}
+        {{ form.csrf_token }}
+        <div class="form-group">
+            {{ form.description.label }}
+            {{ form.description(class="form-control") }}
+        </div>
+        <div class="form-row">
+            <div class="col">
+            {{ form.size_x.label }}
+            {{ form.size_x(class="form-control")}}
+            </div>
+            <div class="col">
+                {{ form.size_y.label }}
+                {{ form.size_y(class="form-control")}}
+            </div>
+            <div class="col">
+                {{ form.size_z.label }}
+                {{ form.size_z(class="form-control")}}
+            </div>
+        </div>
+        <div class="form-row">
+            <div class="col">
+            {{ form.center_x.label }}
+            {{ form.center_x(class="form-control")}}
+            </div>
+            <div class="col">
+                {{ form.center_y.label }}
+                {{ form.center_y(class="form-control")}}
+            </div>
+            <div class="col">
+                {{ form.center_z.label }}
+                {{ form.center_z(class="form-control")}}
+            </div>
+        </div>
+        <div class="form-row">
+            <div class="col">
+                {{ form.target.label }}
+                {{ form.target(class="form-control") }}
+            </div>
+            <div class="col">
+                {{ form.ligand.label }}
+                {{ form.ligand(class="form-control")}}
+            </div>
+        </div>
+        <div class="form-group">
+            {{ form.email.label }}
+            {{ form.email(class="form-control") }}
+        </div>
+
+        <button class="btn btn-primary">Upload</button>
+    </form>
+    <br>
+    <section>
+        <style>
+            #discovery{
+                height: 40vh;
+            }
+        </style>
+        <div id="discovery"></div>
+        <script src="{{url_for('static',filename='js/discovery.js')}}"></script>
+    </section>
+{% endblock %}
\ No newline at end of file
diff --git a/app/templates/dock_upload.html b/app/templates/dock_upload.html
deleted file mode 100644
index 43dcd63..0000000
--- a/app/templates/dock_upload.html
+++ /dev/null
@@ -1,67 +0,0 @@
-{% extends 'base.html' %}
-{% set active_page = "dock" %}
-{% block main %}
-    <h2>Enter Your Configuration</h2>
-    <form action="{{ url_for('dock_upload') }}" method="post" enctype="multipart/form-data">
-        {% include 'flash_messages.html' %}
-        {{ form.csrf_token }}
-        <div class="form-group">
-            {{ form.description.label }}
-            {{ form.description(class="form-control") }}
-        </div>
-        <div class="form-row">
-            <div class="col">
-            {{ form.size_x.label }}
-            {{ form.size_x(class="form-control")}}
-            </div>
-            <div class="col">
-                {{ form.size_y.label }}
-                {{ form.size_y(class="form-control")}}
-            </div>
-            <div class="col">
-                {{ form.size_z.label }}
-                {{ form.size_z(class="form-control")}}
-            </div>
-        </div>
-        <div class="form-row">
-            <div class="col">
-            {{ form.center_x.label }}
-            {{ form.center_x(class="form-control")}}
-            </div>
-            <div class="col">
-                {{ form.center_y.label }}
-                {{ form.center_y(class="form-control")}}
-            </div>
-            <div class="col">
-                {{ form.center_z.label }}
-                {{ form.center_z(class="form-control")}}
-            </div>
-        </div>
-        <div class="form-row">
-            <div class="col">
-                {{ form.target.label }}
-                {{ form.target(class="form-control") }}
-            </div>
-            <div class="col">
-                {{ form.ligand.label }}
-                {{ form.ligand(class="form-control")}}
-            </div>
-        </div>
-        <div class="form-group">
-            {{ form.email.label }}
-            {{ form.email(class="form-control") }}
-        </div>
-
-        <button class="btn btn-primary">Upload</button>
-    </form>
-    <br>
-    <section>
-        <style>
-            #discovery{
-                height: 40vh;
-            }
-        </style>
-        <div id="discovery"></div>
-        <script src="{{url_for('static',filename='js/discovery.js')}}"></script>
-    </section>
-{% endblock %}
\ No newline at end of file
diff --git a/app/templates/dock_upload_single.html b/app/templates/dock_upload_single.html
deleted file mode 100644
index 5329972..0000000
--- a/app/templates/dock_upload_single.html
+++ /dev/null
@@ -1,43 +0,0 @@
-{% extends 'base.html' %}
-{% set active_page = "dock" %}
-{% block main %}
-    <h2>Enter Your Configuration</h2>
-    <form action="{{ url_for('dock_upload_single') }}" method="post" enctype="multipart/form-data">
-        {% include 'flash_messages.html' %}
-        {{ form.csrf_token }}
-        <div class="form-group">
-            {{ form.description.label }}
-            {{ form.description(class="form-control") }}
-        </div>
-        <div class="form-row">
-            <div class="col">
-            {{ form.pdbID.label }}
-            {{ form.pdbID(class="form-control")}}
-            </div>
-            <div class="col">
-                {{ form.smiles.label }}
-                {{ form.smiles(class="form-control")}}
-            </div>
-            <div class="col">
-                {{ form.name.label }}
-                {{ form.name(class="form-control")}}
-            </div>
-        </div>
-        <div class="form-group">
-            {{ form.email.label }}
-            {{ form.email(class="form-control") }}
-        </div>
-
-        <button class="btn btn-primary">Upload</button>
-    </form>
-    <br>
-    <section>
-        <style>
-            #discovery{
-                height: 40vh;
-            }
-        </style>
-        <div id="discovery"></div>
-        <script src="{{url_for('static',filename='js/discovery.js')}}"></script>
-    </section>
-{% endblock %}
\ No newline at end of file
diff --git a/app/templates/home.html b/app/templates/home.html
index 1f7f9e5..bf00905 100644
--- a/app/templates/home.html
+++ b/app/templates/home.html
@@ -7,8 +7,8 @@
     <p>The following are the currently active modules</p>
     <h3>Docking</h3>
     <ul>
-        <li><a href="{{ url_for('dock_upload') }}">Dock and Report (Manual)</a> - You can enter your AutoDock Vina configuration, upload the PDBQT files and it will perform the molecular docking and generate a PDF with proper visualisations and protein-interaction profillings (Using PLIP) </li>
-        <li><a href="{{ url_for('dock_upload_single') }}">Dock and Report (Automatic)</a> - You just enter in the PDB Code, target compound's SMILES structure and name, it will automatically find a binding location and then perform docking and report generation</li>
+        <li><a href="{{ url_for('dock_manual') }}">Dock and Report (Manual)</a> - You can enter your AutoDock Vina configuration, upload the PDBQT files and it will perform the molecular docking and generate a PDF with proper visualisations and protein-interaction profillings (Using PLIP) </li>
+        <li><a href="{{ url_for('dock_automatic') }}">Dock and Report (Automatic)</a> - You just enter in the PDB Code, target compound's SMILES structure and name, it will automatically find a binding location and then perform docking and report generation</li>
     </ul>
 
     <h3>Drug Designing</h3>
diff --git a/app/views.py b/app/views.py
index fc1620b..7fe1daa 100644
--- a/app/views.py
+++ b/app/views.py
@@ -273,8 +273,8 @@ def generate():
 
     return render_template('generate.html',expName=j["exp_name"],epochs=j["num_epochs"],optimizer=j["optimizer"].capitalize(), form=form)
 
-@app.route('/Dock', methods=['GET', 'POST'])
-def dock_upload():
+@app.route('/Dock-Manual', methods=['GET', 'POST'])
+def dock_manual():
     form = curieForm()
 
     if request.method == 'POST' and form.validate_on_submit():
@@ -317,10 +317,10 @@ def dock_upload():
         return render_template('display_result.html', filename="OwO", description=description,job=jobID)
 
     flash_errors(form)
-    return render_template('dock_upload.html', form=form)
+    return render_template('dock_manual.html', form=form)
 
-@app.route('/Dock-Single', methods=['GET', 'POST'])
-def dock_upload_single():
+@app.route('/Dock-Automatic', methods=['GET', 'POST'])
+def dock_automatic():
     form = dockSingleForm()
 
     if request.method == 'POST' and form.validate_on_submit():
@@ -354,7 +354,7 @@ def dock_upload_single():
         return render_template('display_result.html', filename="OwO", description=description,job=jobID)
 
     flash_errors(form)
-    return render_template('dock_upload_single.html', form=form)
+    return render_template('dock_automatic.html', form=form)
 
 ###
 # The functions below should be applicable to all Flask apps.
-- 
cgit v1.2.3