From f6196ac068280e76e096ff6a1c66e584ec8cbaa7 Mon Sep 17 00:00:00 2001
From: Navan Chauhan <navanchauhan@gmail.com>
Date: Wed, 2 Sep 2020 18:15:21 +0530
Subject: added instructions in README and deleted misc file

---
 app/run_docking.py | 82 ------------------------------------------------------
 1 file changed, 82 deletions(-)
 delete mode 100644 app/run_docking.py

(limited to 'app/run_docking.py')

diff --git a/app/run_docking.py b/app/run_docking.py
deleted file mode 100644
index 1b86d92..0000000
--- a/app/run_docking.py
+++ /dev/null
@@ -1,82 +0,0 @@
-import mysql.connector as con
-
-mycon = con.connect(host="sql12.freesqldatabase.com",user="sql12352288",password="7X35JENbK3",port=3306,database="sql12352288")
-mycursor = mycon.cursor()
-
-sql_select_Query = "select * from curie where done=0 LIMIT 1"
-mycursor.execute(sql_select_Query)
-
-records = mycursor.fetchall()
-
-def email(zipArchive):
-    import smtplib 
-    from email.mime.multipart import MIMEMultipart 
-    from email.mime.text import MIMEText 
-    from email.mime.base import MIMEBase 
-    from email import encoders 
-    
-    fromaddr = "navanchauhan@gmail.com"
-    toaddr = toEmail
-    
-    msg = MIMEMultipart()  
-    msg['From'] = fromaddr 
-    msg['To'] = toaddr   
-    msg['Subject'] = "Curie Web Results for Job ID " + str(jobID)
-    body = "Attached Zip contains the docked files, PLIP report and PyMOL Visualisations. If the ZIP file does not contain these files, please report this issue by replying to this email. Job was submitted on {} with the description {}".format(date, description)
-    
-    msg.attach(MIMEText(body, 'plain')) 
-    filename = "Curie_Web_Results_Job_ID_" + str(jobID) + ".zip"
-    p = MIMEBase('application', 'octet-stream') 
-    with open((str(zipArchive) + ".zip"), "rb") as attachment:
-        p.set_payload((attachment).read()) 
-    encoders.encode_base64(p) 
-    p.add_header('Content-Disposition', "attachment; filename= %s" % filename) 
-    msg.attach(p) 
-    
-    s = smtplib.SMTP('smtp.gmail.com', 587) 
-    s.starttls() 
-    s.login(fromaddr, 'ircd mday avbc tice') 
-    
-    text = msg.as_string() 
-    
-    s.sendmail(fromaddr, toaddr, text) 
-    s.quit() 
-
-
-print(records[0])
-r = records[0]
-jobID = r[0]
-toEmail = r[1]
-target = r[2]
-ligand = r[3]
-config = r[4]
-date = r[5]
-description = r[6]
-
-import os
-cd = os.getcwd()
-f = os.path.join(cd,"static/uploads")
-t = os.path.join(f,"receptor",target)
-r = os.path.join(f,"ligands",ligand)
-c = os.path.join(f,"configs",config)
-print(f)
-import tempfile
-from shutil import copy
-from shutil import make_archive
-
-with tempfile.TemporaryDirectory() as directory:
-    print('The created temporary directory is %s' % directory)
-    os.chdir(directory)
-    copy(t,os.getcwd())
-    copy(r,os.getcwd())
-    copy(c, os.getcwd())
-    os.system("docker run --rm -v ${PWD}:/results -w /results -u $(id -u ${USER}):$(id -g ${USER}) navanchauhan/curie-cli -r %s -l %s  -c %s -dpi" % (target,ligand,config))
-    #copy("report.pdf",f)
-    z = "Curie_Web_Result_"+str(jobID)
-    zi = os.path.join(f,z)
-    make_archive(zi, 'zip', directory)
-    #copy(("Curie_Web_Result_"+str(jobID)),f)
-    email(zi)
-    #print((str(zi) + ".zip"))
-    mycursor.execute("UPDATE curie set done=1 where id={}".format(jobID))
-    mycon.commit()
\ No newline at end of file
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