From ae27a5c9996f34487ee0f2669104b30dee263189 Mon Sep 17 00:00:00 2001 From: Navan Chauhan Date: Mon, 24 Aug 2020 16:02:32 +0530 Subject: added pubmed search --- app/views.py | 27 +++++++++++++++++++++++++-- 1 file changed, 25 insertions(+), 2 deletions(-) (limited to 'app/views.py') diff --git a/app/views.py b/app/views.py index 0f544b1..89b0374 100644 --- a/app/views.py +++ b/app/views.py @@ -9,10 +9,13 @@ from flask import render_template, request, flash from werkzeug.utils import secure_filename from random import choice, shuffle from string import digits, ascii_lowercase +from pymed import PubMed +from datetime import datetime +import json # Note: that when using Flask-WTF we need to import the Form Class that we created # in forms.py -from .forms import MyForm, curieForm, statusForm, generateSMILES +from .forms import MyForm, curieForm, statusForm, generateSMILES, PyMedSearch def gen_word(N, min_N_dig, min_N_low): choose_from = [digits]*min_N_dig + [ascii_lowercase]*min_N_low @@ -47,6 +50,26 @@ def visualise(): """Render visualisation page.""" return render_template('visualise.html') +@app.route('/Search',methods=['GET','POST']) +def pubmed(): + """Query PubMed""" + form = PyMedSearch() + pubmed = PubMed(tool="Curie", email="navanchauhan@gmail.com") + + if request.method == 'POST' and form.validate_on_submit(): + q = form.query.data + print(form) + print(pubmed) + results = pubmed.query(q,max_results=100) + search = [] + for x in results: + search.append(x.toDict()) + + return render_template('search.html',result=search,form=form) + + flash_errors(form) + return render_template('search.html',form=form) + @app.route('/Status',methods=['GET','POST']) def status(): taskStatusForm = statusForm() @@ -110,7 +133,7 @@ def wtform(): flash_errors(myform) return render_template('wtform.html', form=myform) -tfWorking = -1 +tfWorking = 0 if tfWorking == -1: try: -- cgit v1.2.3