{ "nbformat": 4, "nbformat_minor": 0, "metadata": { "colab": { "name": "Turicreate - Obejct Detection - Malaria - 02.ipynb", "provenance": [], "collapsed_sections": [], "include_colab_link": true }, "kernelspec": { "name": "python3", "display_name": "Python 3" }, "accelerator": "GPU" }, "cells": [ { "cell_type": "markdown", "metadata": { "id": "view-in-github", "colab_type": "text" }, "source": [ "\"Open" ] }, { "cell_type": "markdown", "metadata": { "id": "uObyj04Ma_yK", "colab_type": "text" }, "source": [ "# Object Detection for Malaria using Turicreate" ] }, { "cell_type": "markdown", "metadata": { "id": "EexmbgqLbPZy", "colab_type": "text" }, "source": [ "### 1) Mount Google Drive\n", "\n", "The trained model is thus directly copied to your google drive" ] }, { "cell_type": "code", "metadata": { "id": "9dM_OI1La9Jf", "colab_type": "code", "outputId": "44f04eac-f470-4546-8e8d-c98dcb06a279", "colab": { "base_uri": "https://localhost:8080/", "height": 127 } }, "source": [ "from google.colab import drive\n", "\n", "drive.mount('/content/gdrive')" ], "execution_count": 0, "outputs": [ { "output_type": "stream", "text": [ "Go to this URL in a browser: https://accounts.google.com/o/oauth2/auth?client_id=947318989803-6bn6qk8qdgf4n4g3pfee6491hc0brc4i.apps.googleusercontent.com&redirect_uri=urn%3Aietf%3Awg%3Aoauth%3A2.0%3Aoob&scope=email%20https%3A%2F%2Fwww.googleapis.com%2Fauth%2Fdocs.test%20https%3A%2F%2Fwww.googleapis.com%2Fauth%2Fdrive%20https%3A%2F%2Fwww.googleapis.com%2Fauth%2Fdrive.photos.readonly%20https%3A%2F%2Fwww.googleapis.com%2Fauth%2Fpeopleapi.readonly&response_type=code\n", "\n", "Enter your authorization code:\n", "··········\n", "Mounted at /content/gdrive\n" ], "name": "stdout" } ] }, { "cell_type": "markdown", "metadata": { "id": "8FPZWglobXOn", "colab_type": "text" }, "source": [ "### 2) Install Dependencies\n", "\n", "To train the model on the Colab GPU we need to install the custom version of mxnet\n", "\n", "\n", "##### Make sure you have selected GPU in the runtype settings" ] }, { "cell_type": "code", "metadata": { "id": "Sch_tPbJKZ9b", "colab_type": "code", "outputId": "948c81b5-b683-4b5e-96f0-e13215e6f90e", "colab": { "base_uri": "https://localhost:8080/", "height": 1000 } }, "source": [ "!pip install turicreate\n", "!pip uninstall -y mxnet\n", "!pip install mxnet-cu100==1.4.0.post0" ], "execution_count": 0, "outputs": [ { "output_type": "stream", "text": [ "Collecting turicreate\n", "\u001b[?25l Downloading https://files.pythonhosted.org/packages/05/bf/d1c74d5002be47db24b13adde42e5898b1ff63cae31e582ddd908006ae37/turicreate-5.8-cp36-cp36m-manylinux1_x86_64.whl (90.7MB)\n", "\u001b[K |████████████████████████████████| 90.7MB 116kB/s \n", "\u001b[?25hRequirement already satisfied: prettytable==0.7.2 in /usr/local/lib/python3.6/dist-packages (from turicreate) (0.7.2)\n", "Requirement already satisfied: six>=1.10.0 in /usr/local/lib/python3.6/dist-packages (from turicreate) (1.12.0)\n", "Collecting 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"\u001b[31mERROR: datascience 0.10.6 has requirement folium==0.2.1, but you'll have folium 0.8.3 which is incompatible.\u001b[0m\n", "\u001b[31mERROR: albumentations 0.1.12 has requirement imgaug<0.2.7,>=0.2.5, but you'll have imgaug 0.2.9 which is incompatible.\u001b[0m\n", "\u001b[31mERROR: mxnet 1.1.0.post0 has requirement numpy<1.15.0,>=1.8.2, but you'll have numpy 1.16.4 which is incompatible.\u001b[0m\n", "\u001b[31mERROR: mxnet 1.1.0.post0 has requirement requests<2.19.0,>=2.18.4, but you'll have requests 2.21.0 which is incompatible.\u001b[0m\n", "Installing collected packages: graphviz, numpy, mxnet, pillow, resampy, coremltools, turicreate\n", " Found existing installation: graphviz 0.10.1\n", " Uninstalling graphviz-0.10.1:\n", " Successfully uninstalled graphviz-0.10.1\n", " Found existing installation: numpy 1.17.3\n", " Uninstalling numpy-1.17.3:\n", " Successfully uninstalled numpy-1.17.3\n", " Found existing installation: Pillow 4.3.0\n", " Uninstalling Pillow-4.3.0:\n", " Successfully uninstalled Pillow-4.3.0\n", " Found existing installation: resampy 0.2.2\n", " Uninstalling resampy-0.2.2:\n", " Successfully uninstalled resampy-0.2.2\n", "Successfully installed coremltools-3.0b3 graphviz-0.8.4 mxnet-1.1.0.post0 numpy-1.16.4 pillow-6.2.1 resampy-0.2.1 turicreate-5.8\n" ], "name": "stdout" }, { "output_type": "display_data", "data": { "application/vnd.colab-display-data+json": { "pip_warning": { "packages": [ "PIL", "numpy" ] } } }, "metadata": { "tags": [] } }, { "output_type": "stream", "text": [ "Uninstalling mxnet-1.1.0.post0:\n", " Successfully uninstalled mxnet-1.1.0.post0\n", "Collecting mxnet-cu100==1.4.0.post0\n", "\u001b[?25l Downloading https://files.pythonhosted.org/packages/ae/36/40b6d201b46495513f7a7fa25fe8b7d85b3602a22efba119e8146d5f1601/mxnet_cu100-1.4.0.post0-py2.py3-none-manylinux1_x86_64.whl (487.9MB)\n", "\u001b[K |████████████████████████████████| 487.9MB 32kB/s \n", "\u001b[?25hCollecting numpy<1.15.0,>=1.8.2\n", "\u001b[?25l Downloading https://files.pythonhosted.org/packages/e5/c4/395ebb218053ba44d64935b3729bc88241ec279915e72100c5979db10945/numpy-1.14.6-cp36-cp36m-manylinux1_x86_64.whl (13.8MB)\n", "\u001b[K |████████████████████████████████| 13.8MB 27.3MB/s \n", "\u001b[?25hRequirement already satisfied: graphviz<0.9.0,>=0.8.1 in /usr/local/lib/python3.6/dist-packages (from mxnet-cu100==1.4.0.post0) (0.8.4)\n", "Requirement already satisfied: requests>=2.20.0 in /usr/local/lib/python3.6/dist-packages (from mxnet-cu100==1.4.0.post0) (2.21.0)\n", "Requirement already satisfied: chardet<3.1.0,>=3.0.2 in /usr/local/lib/python3.6/dist-packages (from requests>=2.20.0->mxnet-cu100==1.4.0.post0) (3.0.4)\n", "Requirement already satisfied: urllib3<1.25,>=1.21.1 in /usr/local/lib/python3.6/dist-packages (from requests>=2.20.0->mxnet-cu100==1.4.0.post0) (1.24.3)\n", "Requirement already satisfied: certifi>=2017.4.17 in /usr/local/lib/python3.6/dist-packages (from 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requirement folium==0.2.1, but you'll have folium 0.8.3 which is incompatible.\u001b[0m\n", "\u001b[31mERROR: cvxpy 1.0.25 has requirement numpy>=1.15, but you'll have numpy 1.14.6 which is incompatible.\u001b[0m\n", "\u001b[31mERROR: blis 0.2.4 has requirement numpy>=1.15.0, but you'll have numpy 1.14.6 which is incompatible.\u001b[0m\n", "\u001b[31mERROR: albumentations 0.1.12 has requirement imgaug<0.2.7,>=0.2.5, but you'll have imgaug 0.2.9 which is incompatible.\u001b[0m\n", "Installing collected packages: numpy, mxnet-cu100\n", " Found existing installation: numpy 1.16.4\n", " Uninstalling numpy-1.16.4:\n", " Successfully uninstalled numpy-1.16.4\n", "Successfully installed mxnet-cu100-1.4.0.post0 numpy-1.14.6\n" ], "name": "stdout" }, { "output_type": "display_data", "data": { "application/vnd.colab-display-data+json": { "pip_warning": { "packages": [ "numpy" ] } } }, "metadata": { "tags": [] } } ] }, { "cell_type": "markdown", "metadata": { "id": "69zbhy-zdip0", "colab_type": "text" }, "source": [ "Now restart the runtime." ] }, { "cell_type": "markdown", "metadata": { "id": "XIAuyza3drzJ", "colab_type": "text" }, "source": [ "### 3) Fetch the dataset" ] }, { "cell_type": "code", "metadata": { "id": "0SUgEVilK-t5", "colab_type": "code", "outputId": "aa26c154-3027-4fd9-829a-c3e6499574cf", "colab": { "base_uri": "https://localhost:8080/", "height": 1000 } }, "source": [ "!wget http://air.ug/downloads/plasmodium-images.zip\n", "!unzip plasmodium-images.zip\n", "!ls images/" ], "execution_count": 0, "outputs": [ { "output_type": "stream", "text": [ "--2019-11-05 00:45:29-- http://air.ug/downloads/plasmodium-images.zip\n", "Resolving air.ug (air.ug)... 34.242.164.142\n", "Connecting to air.ug (air.ug)|34.242.164.142|:80... connected.\n", "HTTP request sent, awaiting response... 200 OK\n", "Length: 148185339 (141M) [application/zip]\n", "Saving to: ‘plasmodium-images.zip’\n", "\n", "plasmodium-images.z 100%[===================>] 141.32M 21.3MB/s in 6.7s \n", 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"plasmodium-0887.jpg plasmodium-1788.jpg plasmodium-2689.jpg\n", "plasmodium-0888.jpg plasmodium-1789.jpg plasmodium-2690.jpg\n", "plasmodium-0889.jpg plasmodium-1790.jpg plasmodium-2691.jpg\n", "plasmodium-0890.jpg plasmodium-1791.jpg plasmodium-2692.jpg\n", "plasmodium-0891.jpg plasmodium-1792.jpg plasmodium-2693.jpg\n", "plasmodium-0892.jpg plasmodium-1793.jpg plasmodium-2694.jpg\n", "plasmodium-0893.jpg plasmodium-1794.jpg plasmodium-2695.jpg\n", "plasmodium-0894.jpg plasmodium-1795.jpg plasmodium-2696.jpg\n", "plasmodium-0895.jpg plasmodium-1796.jpg plasmodium-2697.jpg\n", "plasmodium-0896.jpg plasmodium-1797.jpg plasmodium-2698.jpg\n", "plasmodium-0897.jpg plasmodium-1798.jpg plasmodium-2699.jpg\n", "plasmodium-0898.jpg plasmodium-1799.jpg plasmodium-2700.jpg\n", "plasmodium-0899.jpg plasmodium-1800.jpg plasmodium-2701.jpg\n", "plasmodium-0900.jpg plasmodium-1801.jpg plasmodium-2702.jpg\n" ], "name": "stdout" } ] }, { "cell_type": "markdown", "metadata": { "id": "jeT5N_R-dyKW", "colab_type": "text" }, "source": [ "### 4) Fix issues with the dataset" ] }, { "cell_type": "code", "metadata": { "id": "ckoCqc8MLQdi", "colab_type": "code", "outputId": "32a89913-d0d2-4696-f399-78544cb37f4d", "colab": { "base_uri": "https://localhost:8080/", "height": 1000 } }, "source": [ "import os\n", "from xml.etree import ElementTree as ET\n", "\n", "path = './annotation/'\n", "\n", "replaceString = True\n", "addFileName = True\n", "\n", "def addname(file, xml_file):\n", "\ttree = ET.parse(xml_file)\n", "\troot = tree.getroot()\n", "\n", "\tf = ET.Element(\"filename\")\n", "\n", "\tf.text = file\n", "\n", "\troot.insert(1, f)\n", "\n", "\ttree.write(xml_file)\n", "\n", "\n", "def replaceIt(filename, old, new):\n", "\tf = open(filename,'r')\n", "\tfiledata = f.read()\n", "\tf.close()\n", "\tnewdata = filedata.replace(old,new)\n", "\tf = open(filename,'w')\n", "\tf.write(newdata)\n", "\tf.close()\n", "\n", "\n", "\n", "for filename in os.listdir(path):\n", "\tif not filename.endswith('.xml'): continue\n", "\tfullname = os.path.join(path, filename)\n", "\tif addFileName:\n", "\t\timagename = filename.replace('xml','jpg')\n", "\t\taddname(imagename, fullname)\n", "\tif replaceString:\n", "\t\treplaceIt(fullname, \"person\", \"plasmodium\")\n", "\tprint(\"Fixed\", fullname)\n", "\n" ], "execution_count": 0, "outputs": [ { "output_type": "stream", "text": [ "Fixed ./annotation/plasmodium-0492.xml\n", "Fixed ./annotation/plasmodium-2168.xml\n", "Fixed ./annotation/plasmodium-1707.xml\n", "Fixed ./annotation/plasmodium-0149.xml\n", "Fixed ./annotation/plasmodium-1330.xml\n", "Fixed ./annotation/plasmodium-0485.xml\n", "Fixed ./annotation/plasmodium-0756.xml\n", "Fixed ./annotation/plasmodium-1670.xml\n", "Fixed ./annotation/plasmodium-1875.xml\n", "Fixed ./annotation/plasmodium-0108.xml\n", "Fixed ./annotation/plasmodium-1053.xml\n", "Fixed ./annotation/plasmodium-0659.xml\n", "Fixed ./annotation/plasmodium-2069.xml\n", "Fixed ./annotation/plasmodium-0153.xml\n", "Fixed ./annotation/plasmodium-2155.xml\n", "Fixed ./annotation/plasmodium-1284.xml\n", "Fixed ./annotation/plasmodium-2352.xml\n", "Fixed ./annotation/plasmodium-0261.xml\n", "Fixed ./annotation/plasmodium-0195.xml\n", "Fixed ./annotation/plasmodium-1939.xml\n", "Fixed ./annotation/plasmodium-1430.xml\n", "Fixed ./annotation/plasmodium-0935.xml\n", "Fixed ./annotation/plasmodium-0041.xml\n", "Fixed ./annotation/plasmodium-0605.xml\n", "Fixed ./annotation/plasmodium-1007.xml\n", "Fixed ./annotation/plasmodium-0783.xml\n", "Fixed ./annotation/plasmodium-2442.xml\n", "Fixed ./annotation/plasmodium-1742.xml\n", "Fixed ./annotation/plasmodium-1415.xml\n", "Fixed ./annotation/plasmodium-0619.xml\n", "Fixed ./annotation/plasmodium-0321.xml\n", "Fixed ./annotation/plasmodium-0021.xml\n", "Fixed ./annotation/plasmodium-0442.xml\n", "Fixed ./annotation/plasmodium-2011.xml\n", "Fixed ./annotation/plasmodium-2277.xml\n", "Fixed ./annotation/plasmodium-1044.xml\n", "Fixed ./annotation/plasmodium-2454.xml\n", "Fixed ./annotation/plasmodium-2469.xml\n", "Fixed ./annotation/plasmodium-2185.xml\n", "Fixed ./annotation/plasmodium-0703.xml\n", "Fixed ./annotation/plasmodium-1986.xml\n", "Fixed ./annotation/plasmodium-1647.xml\n", "Fixed ./annotation/plasmodium-2075.xml\n", "Fixed ./annotation/plasmodium-0658.xml\n", "Fixed ./annotation/plasmodium-1648.xml\n", "Fixed ./annotation/plasmodium-1826.xml\n", "Fixed ./annotation/plasmodium-1862.xml\n", "Fixed ./annotation/plasmodium-1108.xml\n", "Fixed ./annotation/plasmodium-1211.xml\n", "Fixed ./annotation/plasmodium-2427.xml\n", "Fixed ./annotation/plasmodium-1713.xml\n", "Fixed ./annotation/plasmodium-0803.xml\n", "Fixed ./annotation/plasmodium-1234.xml\n", "Fixed ./annotation/plasmodium-1709.xml\n", "Fixed ./annotation/plasmodium-0299.xml\n", "Fixed ./annotation/plasmodium-1273.xml\n", "Fixed ./annotation/plasmodium-1050.xml\n", "Fixed ./annotation/plasmodium-0718.xml\n", "Fixed ./annotation/plasmodium-2577.xml\n", "Fixed ./annotation/plasmodium-0636.xml\n", "Fixed ./annotation/plasmodium-0971.xml\n", "Fixed ./annotation/plasmodium-1142.xml\n", "Fixed ./annotation/plasmodium-2406.xml\n", "Fixed ./annotation/plasmodium-2568.xml\n", "Fixed ./annotation/plasmodium-0852.xml\n", "Fixed ./annotation/plasmodium-1463.xml\n", "Fixed ./annotation/plasmodium-2438.xml\n", "Fixed ./annotation/plasmodium-2532.xml\n", "Fixed ./annotation/plasmodium-1348.xml\n", "Fixed ./annotation/plasmodium-2663.xml\n", "Fixed ./annotation/plasmodium-0649.xml\n", "Fixed ./annotation/plasmodium-1054.xml\n", "Fixed ./annotation/plasmodium-2206.xml\n", "Fixed ./annotation/plasmodium-0721.xml\n", "Fixed ./annotation/plasmodium-0847.xml\n", "Fixed ./annotation/plasmodium-1633.xml\n", "Fixed ./annotation/plasmodium-1890.xml\n", "Fixed ./annotation/plasmodium-0961.xml\n", "Fixed ./annotation/plasmodium-1381.xml\n", "Fixed ./annotation/plasmodium-1555.xml\n", "Fixed ./annotation/plasmodium-2191.xml\n", "Fixed ./annotation/plasmodium-2509.xml\n", "Fixed ./annotation/plasmodium-1810.xml\n", "Fixed ./annotation/plasmodium-0469.xml\n", "Fixed ./annotation/plasmodium-0888.xml\n", "Fixed ./annotation/plasmodium-0845.xml\n", "Fixed ./annotation/plasmodium-2695.xml\n", "Fixed ./annotation/plasmodium-0289.xml\n", "Fixed ./annotation/plasmodium-0091.xml\n", "Fixed ./annotation/plasmodium-2430.xml\n", "Fixed ./annotation/plasmodium-1984.xml\n", "Fixed ./annotation/plasmodium-1244.xml\n", "Fixed ./annotation/plasmodium-1135.xml\n", "Fixed ./annotation/plasmodium-1274.xml\n", "Fixed ./annotation/plasmodium-1089.xml\n", "Fixed ./annotation/plasmodium-2437.xml\n", "Fixed ./annotation/plasmodium-1256.xml\n", "Fixed ./annotation/plasmodium-1163.xml\n", "Fixed ./annotation/plasmodium-0439.xml\n", "Fixed ./annotation/plasmodium-2180.xml\n", "Fixed ./annotation/plasmodium-1318.xml\n", "Fixed ./annotation/plasmodium-0411.xml\n", "Fixed ./annotation/plasmodium-2296.xml\n", "Fixed ./annotation/plasmodium-2250.xml\n", "Fixed ./annotation/plasmodium-1575.xml\n", "Fixed ./annotation/plasmodium-1646.xml\n", "Fixed ./annotation/plasmodium-2367.xml\n", "Fixed ./annotation/plasmodium-2389.xml\n", "Fixed ./annotation/plasmodium-2587.xml\n", "Fixed ./annotation/plasmodium-1259.xml\n", "Fixed ./annotation/plasmodium-2483.xml\n", "Fixed ./annotation/plasmodium-1059.xml\n", "Fixed ./annotation/plasmodium-0450.xml\n", "Fixed ./annotation/plasmodium-0479.xml\n", "Fixed ./annotation/plasmodium-0353.xml\n", "Fixed ./annotation/plasmodium-0175.xml\n", "Fixed ./annotation/plasmodium-2295.xml\n", "Fixed ./annotation/plasmodium-0973.xml\n", "Fixed ./annotation/plasmodium-2291.xml\n", "Fixed ./annotation/plasmodium-1147.xml\n", "Fixed ./annotation/plasmodium-0530.xml\n", "Fixed ./annotation/plasmodium-2404.xml\n", "Fixed ./annotation/plasmodium-1924.xml\n", "Fixed ./annotation/plasmodium-0566.xml\n", "Fixed ./annotation/plasmodium-2335.xml\n", "Fixed ./annotation/plasmodium-1222.xml\n", "Fixed ./annotation/plasmodium-1464.xml\n", "Fixed ./annotation/plasmodium-0881.xml\n", "Fixed ./annotation/plasmodium-2516.xml\n", "Fixed ./annotation/plasmodium-0931.xml\n", "Fixed ./annotation/plasmodium-1795.xml\n", "Fixed ./annotation/plasmodium-0799.xml\n", "Fixed ./annotation/plasmodium-0208.xml\n", "Fixed ./annotation/plasmodium-1442.xml\n", "Fixed ./annotation/plasmodium-2599.xml\n", "Fixed ./annotation/plasmodium-0587.xml\n", "Fixed ./annotation/plasmodium-2653.xml\n", "Fixed ./annotation/plasmodium-1143.xml\n", "Fixed ./annotation/plasmodium-0434.xml\n", "Fixed ./annotation/plasmodium-1654.xml\n", "Fixed ./annotation/plasmodium-1861.xml\n", "Fixed ./annotation/plasmodium-1956.xml\n", "Fixed ./annotation/plasmodium-0339.xml\n", "Fixed ./annotation/plasmodium-0476.xml\n", "Fixed ./annotation/plasmodium-1275.xml\n", "Fixed ./annotation/plasmodium-0892.xml\n", "Fixed ./annotation/plasmodium-1424.xml\n", "Fixed ./annotation/plasmodium-0267.xml\n", "Fixed ./annotation/plasmodium-0234.xml\n", "Fixed ./annotation/plasmodium-2631.xml\n", "Fixed ./annotation/plasmodium-0684.xml\n", "Fixed ./annotation/plasmodium-1573.xml\n", "Fixed ./annotation/plasmodium-2160.xml\n", "Fixed ./annotation/plasmodium-2460.xml\n", "Fixed ./annotation/plasmodium-0538.xml\n", "Fixed ./annotation/plasmodium-1853.xml\n", "Fixed ./annotation/plasmodium-0958.xml\n", "Fixed ./annotation/plasmodium-0813.xml\n", "Fixed ./annotation/plasmodium-1783.xml\n", "Fixed ./annotation/plasmodium-0656.xml\n", "Fixed ./annotation/plasmodium-2063.xml\n", "Fixed ./annotation/plasmodium-2536.xml\n", "Fixed ./annotation/plasmodium-0016.xml\n", "Fixed ./annotation/plasmodium-0056.xml\n", "Fixed ./annotation/plasmodium-1173.xml\n", "Fixed ./annotation/plasmodium-1094.xml\n", "Fixed ./annotation/plasmodium-2001.xml\n", "Fixed ./annotation/plasmodium-0294.xml\n", "Fixed ./annotation/plasmodium-0301.xml\n", "Fixed ./annotation/plasmodium-1854.xml\n", "Fixed ./annotation/plasmodium-2647.xml\n", "Fixed ./annotation/plasmodium-2561.xml\n", "Fixed ./annotation/plasmodium-0767.xml\n", "Fixed ./annotation/plasmodium-0112.xml\n", "Fixed ./annotation/plasmodium-0661.xml\n", "Fixed ./annotation/plasmodium-0836.xml\n", "Fixed ./annotation/plasmodium-2230.xml\n", "Fixed ./annotation/plasmodium-0942.xml\n", "Fixed ./annotation/plasmodium-2124.xml\n", "Fixed ./annotation/plasmodium-0818.xml\n", "Fixed ./annotation/plasmodium-1243.xml\n", "Fixed ./annotation/plasmodium-2288.xml\n", "Fixed ./annotation/plasmodium-1055.xml\n", "Fixed ./annotation/plasmodium-0462.xml\n", "Fixed ./annotation/plasmodium-1599.xml\n", "Fixed ./annotation/plasmodium-1898.xml\n", "Fixed ./annotation/plasmodium-0328.xml\n", "Fixed ./annotation/plasmodium-2425.xml\n", "Fixed ./annotation/plasmodium-1937.xml\n", "Fixed ./annotation/plasmodium-0705.xml\n", "Fixed ./annotation/plasmodium-0770.xml\n", "Fixed ./annotation/plasmodium-0213.xml\n", "Fixed ./annotation/plasmodium-1063.xml\n", "Fixed ./annotation/plasmodium-0348.xml\n", "Fixed ./annotation/plasmodium-2028.xml\n", "Fixed ./annotation/plasmodium-0005.xml\n", "Fixed ./annotation/plasmodium-0308.xml\n", "Fixed ./annotation/plasmodium-0731.xml\n", "Fixed ./annotation/plasmodium-0250.xml\n", "Fixed ./annotation/plasmodium-2558.xml\n", "Fixed ./annotation/plasmodium-2443.xml\n", "Fixed ./annotation/plasmodium-2146.xml\n", "Fixed ./annotation/plasmodium-1855.xml\n", "Fixed ./annotation/plasmodium-1585.xml\n", "Fixed ./annotation/plasmodium-1953.xml\n", "Fixed ./annotation/plasmodium-0498.xml\n", "Fixed ./annotation/plasmodium-2148.xml\n", "Fixed ./annotation/plasmodium-1973.xml\n", "Fixed ./annotation/plasmodium-0732.xml\n", "Fixed ./annotation/plasmodium-1549.xml\n", "Fixed ./annotation/plasmodium-1570.xml\n", "Fixed ./annotation/plasmodium-0077.xml\n", "Fixed ./annotation/plasmodium-0727.xml\n", "Fixed ./annotation/plasmodium-1192.xml\n", "Fixed ./annotation/plasmodium-1799.xml\n", "Fixed ./annotation/plasmodium-0058.xml\n", "Fixed ./annotation/plasmodium-1617.xml\n", "Fixed ./annotation/plasmodium-1248.xml\n", "Fixed ./annotation/plasmodium-2287.xml\n", "Fixed ./annotation/plasmodium-1719.xml\n", "Fixed ./annotation/plasmodium-0131.xml\n", "Fixed ./annotation/plasmodium-1034.xml\n", "Fixed ./annotation/plasmodium-2261.xml\n", "Fixed ./annotation/plasmodium-0024.xml\n", "Fixed ./annotation/plasmodium-1060.xml\n", "Fixed ./annotation/plasmodium-1052.xml\n", "Fixed ./annotation/plasmodium-1798.xml\n", "Fixed ./annotation/plasmodium-1968.xml\n", "Fixed ./annotation/plasmodium-0356.xml\n", "Fixed ./annotation/plasmodium-2234.xml\n", "Fixed ./annotation/plasmodium-2246.xml\n", "Fixed ./annotation/plasmodium-1106.xml\n", "Fixed ./annotation/plasmodium-0862.xml\n", "Fixed ./annotation/plasmodium-0032.xml\n", "Fixed ./annotation/plasmodium-0443.xml\n", "Fixed ./annotation/plasmodium-0938.xml\n", "Fixed ./annotation/plasmodium-1134.xml\n", "Fixed ./annotation/plasmodium-2385.xml\n", "Fixed ./annotation/plasmodium-0672.xml\n", "Fixed ./annotation/plasmodium-2676.xml\n", "Fixed ./annotation/plasmodium-2106.xml\n", "Fixed ./annotation/plasmodium-2027.xml\n", "Fixed ./annotation/plasmodium-1000.xml\n", "Fixed ./annotation/plasmodium-0810.xml\n", "Fixed ./annotation/plasmodium-0421.xml\n", "Fixed ./annotation/plasmodium-1876.xml\n", "Fixed ./annotation/plasmodium-0554.xml\n", "Fixed ./annotation/plasmodium-1669.xml\n", "Fixed ./annotation/plasmodium-0087.xml\n", "Fixed ./annotation/plasmodium-1944.xml\n", "Fixed ./annotation/plasmodium-2259.xml\n", "Fixed ./annotation/plasmodium-1289.xml\n", "Fixed ./annotation/plasmodium-2110.xml\n", "Fixed ./annotation/plasmodium-1307.xml\n", "Fixed ./annotation/plasmodium-0816.xml\n", "Fixed ./annotation/plasmodium-2490.xml\n", "Fixed ./annotation/plasmodium-1893.xml\n", "Fixed ./annotation/plasmodium-0459.xml\n", "Fixed ./annotation/plasmodium-0634.xml\n", "Fixed ./annotation/plasmodium-1200.xml\n", "Fixed ./annotation/plasmodium-1102.xml\n", "Fixed ./annotation/plasmodium-0929.xml\n", "Fixed ./annotation/plasmodium-2642.xml\n", "Fixed ./annotation/plasmodium-0355.xml\n", "Fixed ./annotation/plasmodium-0446.xml\n", "Fixed ./annotation/plasmodium-2528.xml\n", "Fixed ./annotation/plasmodium-2622.xml\n", "Fixed ./annotation/plasmodium-2636.xml\n", "Fixed ./annotation/plasmodium-0324.xml\n", "Fixed ./annotation/plasmodium-0940.xml\n", "Fixed ./annotation/plasmodium-0106.xml\n", "Fixed ./annotation/plasmodium-0565.xml\n", "Fixed ./annotation/plasmodium-0793.xml\n", "Fixed ./annotation/plasmodium-1850.xml\n", "Fixed ./annotation/plasmodium-0239.xml\n", "Fixed ./annotation/plasmodium-1979.xml\n", "Fixed ./annotation/plasmodium-1394.xml\n", "Fixed ./annotation/plasmodium-2074.xml\n", "Fixed ./annotation/plasmodium-1368.xml\n", "Fixed ./annotation/plasmodium-0066.xml\n", "Fixed ./annotation/plasmodium-1730.xml\n", "Fixed ./annotation/plasmodium-0710.xml\n", "Fixed ./annotation/plasmodium-0053.xml\n", "Fixed ./annotation/plasmodium-1971.xml\n", "Fixed ./annotation/plasmodium-0653.xml\n", "Fixed ./annotation/plasmodium-1118.xml\n", "Fixed ./annotation/plasmodium-1997.xml\n", "Fixed ./annotation/plasmodium-2050.xml\n", "Fixed ./annotation/plasmodium-2661.xml\n", "Fixed ./annotation/plasmodium-2102.xml\n", "Fixed ./annotation/plasmodium-0090.xml\n", "Fixed ./annotation/plasmodium-2257.xml\n", "Fixed ./annotation/plasmodium-0921.xml\n", "Fixed ./annotation/plasmodium-2699.xml\n", "Fixed ./annotation/plasmodium-2673.xml\n", "Fixed ./annotation/plasmodium-0306.xml\n", "Fixed ./annotation/plasmodium-2539.xml\n", "Fixed ./annotation/plasmodium-0072.xml\n", "Fixed ./annotation/plasmodium-0997.xml\n", "Fixed ./annotation/plasmodium-1693.xml\n", "Fixed ./annotation/plasmodium-1735.xml\n", "Fixed ./annotation/plasmodium-0867.xml\n", "Fixed ./annotation/plasmodium-2119.xml\n", "Fixed ./annotation/plasmodium-2089.xml\n", "Fixed ./annotation/plasmodium-0254.xml\n", "Fixed ./annotation/plasmodium-1238.xml\n", "Fixed ./annotation/plasmodium-2267.xml\n", "Fixed ./annotation/plasmodium-2285.xml\n", "Fixed ./annotation/plasmodium-0761.xml\n", "Fixed ./annotation/plasmodium-1720.xml\n", "Fixed ./annotation/plasmodium-1036.xml\n", "Fixed ./annotation/plasmodium-0034.xml\n", "Fixed ./annotation/plasmodium-0272.xml\n", "Fixed ./annotation/plasmodium-0505.xml\n", "Fixed ./annotation/plasmodium-1625.xml\n", "Fixed ./annotation/plasmodium-0232.xml\n", "Fixed ./annotation/plasmodium-1665.xml\n", "Fixed ./annotation/plasmodium-0089.xml\n", "Fixed ./annotation/plasmodium-1304.xml\n", "Fixed ./annotation/plasmodium-2502.xml\n", "Fixed ./annotation/plasmodium-0981.xml\n", "Fixed ./annotation/plasmodium-1332.xml\n", "Fixed ./annotation/plasmodium-1840.xml\n", "Fixed ./annotation/plasmodium-2683.xml\n", "Fixed ./annotation/plasmodium-2481.xml\n", "Fixed ./annotation/plasmodium-0022.xml\n", "Fixed ./annotation/plasmodium-0910.xml\n", "Fixed ./annotation/plasmodium-2550.xml\n", "Fixed ./annotation/plasmodium-1507.xml\n", "Fixed ./annotation/plasmodium-2650.xml\n", "Fixed ./annotation/plasmodium-1569.xml\n", "Fixed ./annotation/plasmodium-0996.xml\n", "Fixed ./annotation/plasmodium-0282.xml\n", "Fixed ./annotation/plasmodium-1245.xml\n", "Fixed ./annotation/plasmodium-2101.xml\n", "Fixed ./annotation/plasmodium-1556.xml\n", "Fixed ./annotation/plasmodium-0907.xml\n", "Fixed ./annotation/plasmodium-0305.xml\n", "Fixed ./annotation/plasmodium-2033.xml\n", "Fixed ./annotation/plasmodium-0228.xml\n", "Fixed ./annotation/plasmodium-1907.xml\n", "Fixed ./annotation/plasmodium-0616.xml\n", "Fixed ./annotation/plasmodium-2525.xml\n", "Fixed ./annotation/plasmodium-2651.xml\n", "Fixed ./annotation/plasmodium-0384.xml\n", "Fixed ./annotation/plasmodium-1076.xml\n", "Fixed ./annotation/plasmodium-2562.xml\n", "Fixed ./annotation/plasmodium-1846.xml\n", "Fixed ./annotation/plasmodium-2252.xml\n", "Fixed ./annotation/plasmodium-0683.xml\n", "Fixed ./annotation/plasmodium-0995.xml\n", "Fixed ./annotation/plasmodium-2341.xml\n", "Fixed ./annotation/plasmodium-1372.xml\n", "Fixed ./annotation/plasmodium-1932.xml\n", "Fixed ./annotation/plasmodium-0899.xml\n", "Fixed ./annotation/plasmodium-0708.xml\n", "Fixed ./annotation/plasmodium-0438.xml\n", "Fixed ./annotation/plasmodium-1323.xml\n", "Fixed ./annotation/plasmodium-1427.xml\n", "Fixed ./annotation/plasmodium-0754.xml\n", "Fixed ./annotation/plasmodium-0402.xml\n", "Fixed ./annotation/plasmodium-2498.xml\n", "Fixed ./annotation/plasmodium-0162.xml\n", "Fixed ./annotation/plasmodium-2038.xml\n", "Fixed ./annotation/plasmodium-2112.xml\n", "Fixed ./annotation/plasmodium-2537.xml\n", "Fixed ./annotation/plasmodium-0990.xml\n", "Fixed ./annotation/plasmodium-0889.xml\n", "Fixed ./annotation/plasmodium-2386.xml\n", "Fixed ./annotation/plasmodium-1126.xml\n", "Fixed ./annotation/plasmodium-2301.xml\n", "Fixed ./annotation/plasmodium-0685.xml\n", "Fixed ./annotation/plasmodium-2258.xml\n", "Fixed ./annotation/plasmodium-2681.xml\n", "Fixed ./annotation/plasmodium-1774.xml\n", "Fixed ./annotation/plasmodium-0293.xml\n", "Fixed ./annotation/plasmodium-2548.xml\n", "Fixed ./annotation/plasmodium-1112.xml\n", "Fixed ./annotation/plasmodium-2479.xml\n", "Fixed ./annotation/plasmodium-0057.xml\n", "Fixed ./annotation/plasmodium-2381.xml\n", "Fixed ./annotation/plasmodium-0913.xml\n", "Fixed ./annotation/plasmodium-1561.xml\n", "Fixed ./annotation/plasmodium-0738.xml\n", "Fixed ./annotation/plasmodium-1755.xml\n", "Fixed ./annotation/plasmodium-0275.xml\n", "Fixed ./annotation/plasmodium-2559.xml\n", "Fixed ./annotation/plasmodium-2066.xml\n", "Fixed ./annotation/plasmodium-0454.xml\n", "Fixed ./annotation/plasmodium-0349.xml\n", "Fixed ./annotation/plasmodium-2440.xml\n", "Fixed ./annotation/plasmodium-0117.xml\n", "Fixed ./annotation/plasmodium-2171.xml\n", "Fixed ./annotation/plasmodium-0436.xml\n", "Fixed ./annotation/plasmodium-2366.xml\n", "Fixed ./annotation/plasmodium-2380.xml\n", "Fixed ./annotation/plasmodium-1315.xml\n", "Fixed ./annotation/plasmodium-2580.xml\n", "Fixed ./annotation/plasmodium-2255.xml\n", "Fixed ./annotation/plasmodium-0233.xml\n", "Fixed ./annotation/plasmodium-1210.xml\n", "Fixed ./annotation/plasmodium-2608.xml\n", "Fixed ./annotation/plasmodium-1088.xml\n", "Fixed ./annotation/plasmodium-1386.xml\n", "Fixed ./annotation/plasmodium-0966.xml\n", "Fixed ./annotation/plasmodium-1785.xml\n", "Fixed ./annotation/plasmodium-1231.xml\n", "Fixed ./annotation/plasmodium-2505.xml\n", "Fixed ./annotation/plasmodium-0101.xml\n", "Fixed ./annotation/plasmodium-0069.xml\n", "Fixed ./annotation/plasmodium-1165.xml\n", "Fixed ./annotation/plasmodium-0467.xml\n", "Fixed ./annotation/plasmodium-1624.xml\n", "Fixed ./annotation/plasmodium-2220.xml\n", "Fixed ./annotation/plasmodium-2078.xml\n", "Fixed ./annotation/plasmodium-0166.xml\n", "Fixed ./annotation/plasmodium-0465.xml\n", "Fixed ./annotation/plasmodium-0420.xml\n", "Fixed ./annotation/plasmodium-0559.xml\n", "Fixed ./annotation/plasmodium-1698.xml\n", "Fixed ./annotation/plasmodium-0769.xml\n", "Fixed ./annotation/plasmodium-0494.xml\n", "Fixed ./annotation/plasmodium-0461.xml\n", "Fixed ./annotation/plasmodium-1551.xml\n", "Fixed ./annotation/plasmodium-1459.xml\n", "Fixed ./annotation/plasmodium-2372.xml\n", "Fixed ./annotation/plasmodium-1712.xml\n", "Fixed ./annotation/plasmodium-2251.xml\n", "Fixed ./annotation/plasmodium-1916.xml\n", "Fixed ./annotation/plasmodium-0376.xml\n", "Fixed ./annotation/plasmodium-2279.xml\n", "Fixed ./annotation/plasmodium-1628.xml\n", "Fixed ./annotation/plasmodium-1563.xml\n", "Fixed ./annotation/plasmodium-1565.xml\n", "Fixed ./annotation/plasmodium-0219.xml\n", "Fixed ./annotation/plasmodium-1353.xml\n", "Fixed ./annotation/plasmodium-2239.xml\n", "Fixed ./annotation/plasmodium-0529.xml\n", "Fixed ./annotation/plasmodium-2204.xml\n", "Fixed ./annotation/plasmodium-1398.xml\n", "Fixed ./annotation/plasmodium-1113.xml\n", "Fixed ./annotation/plasmodium-1347.xml\n", "Fixed ./annotation/plasmodium-2333.xml\n", "Fixed ./annotation/plasmodium-1027.xml\n", "Fixed ./annotation/plasmodium-1410.xml\n", "Fixed ./annotation/plasmodium-0714.xml\n", "Fixed ./annotation/plasmodium-0557.xml\n", "Fixed ./annotation/plasmodium-2131.xml\n", "Fixed ./annotation/plasmodium-0212.xml\n", "Fixed ./annotation/plasmodium-1586.xml\n", "Fixed ./annotation/plasmodium-2447.xml\n", "Fixed ./annotation/plasmodium-1146.xml\n", "Fixed ./annotation/plasmodium-0085.xml\n", "Fixed ./annotation/plasmodium-1874.xml\n", "Fixed ./annotation/plasmodium-0669.xml\n", "Fixed ./annotation/plasmodium-0571.xml\n", "Fixed ./annotation/plasmodium-0639.xml\n", "Fixed ./annotation/plasmodium-0352.xml\n", "Fixed ./annotation/plasmodium-1498.xml\n", "Fixed ./annotation/plasmodium-2080.xml\n", "Fixed ./annotation/plasmodium-0427.xml\n", "Fixed ./annotation/plasmodium-0286.xml\n", "Fixed ./annotation/plasmodium-1873.xml\n", "Fixed ./annotation/plasmodium-2325.xml\n", "Fixed ./annotation/plasmodium-1905.xml\n", "Fixed ./annotation/plasmodium-2458.xml\n", "Fixed ./annotation/plasmodium-0919.xml\n", "Fixed ./annotation/plasmodium-1615.xml\n", "Fixed ./annotation/plasmodium-0009.xml\n", "Fixed ./annotation/plasmodium-0717.xml\n", "Fixed ./annotation/plasmodium-0690.xml\n", "Fixed ./annotation/plasmodium-0604.xml\n", "Fixed ./annotation/plasmodium-2392.xml\n", "Fixed ./annotation/plasmodium-1733.xml\n", "Fixed ./annotation/plasmodium-2408.xml\n", "Fixed ./annotation/plasmodium-1378.xml\n", "Fixed ./annotation/plasmodium-1337.xml\n", "Fixed ./annotation/plasmodium-1781.xml\n", "Fixed ./annotation/plasmodium-0780.xml\n", "Fixed ./annotation/plasmodium-0003.xml\n", "Fixed ./annotation/plasmodium-2368.xml\n", "Fixed ./annotation/plasmodium-1198.xml\n", "Fixed ./annotation/plasmodium-1632.xml\n", "Fixed ./annotation/plasmodium-1714.xml\n", "Fixed ./annotation/plasmodium-1204.xml\n", "Fixed ./annotation/plasmodium-1767.xml\n", "Fixed ./annotation/plasmodium-0781.xml\n", "Fixed ./annotation/plasmodium-0811.xml\n", "Fixed ./annotation/plasmodium-2243.xml\n", "Fixed ./annotation/plasmodium-0167.xml\n", "Fixed ./annotation/plasmodium-1407.xml\n", "Fixed ./annotation/plasmodium-1456.xml\n", "Fixed ./annotation/plasmodium-0692.xml\n", "Fixed ./annotation/plasmodium-2482.xml\n", "Fixed ./annotation/plasmodium-1352.xml\n", "Fixed ./annotation/plasmodium-0007.xml\n", "Fixed ./annotation/plasmodium-1136.xml\n", "Fixed 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./annotation/plasmodium-0729.xml\n", "Fixed ./annotation/plasmodium-1408.xml\n", "Fixed ./annotation/plasmodium-2412.xml\n", "Fixed ./annotation/plasmodium-1150.xml\n", "Fixed ./annotation/plasmodium-1947.xml\n", "Fixed ./annotation/plasmodium-1987.xml\n", "Fixed ./annotation/plasmodium-1160.xml\n", "Fixed ./annotation/plasmodium-0989.xml\n", "Fixed ./annotation/plasmodium-0484.xml\n", "Fixed ./annotation/plasmodium-1743.xml\n", "Fixed ./annotation/plasmodium-1645.xml\n", "Fixed ./annotation/plasmodium-0998.xml\n", "Fixed ./annotation/plasmodium-1159.xml\n", "Fixed ./annotation/plasmodium-2455.xml\n", "Fixed ./annotation/plasmodium-2047.xml\n", "Fixed ./annotation/plasmodium-1943.xml\n", "Fixed ./annotation/plasmodium-0755.xml\n", "Fixed ./annotation/plasmodium-1030.xml\n", "Fixed ./annotation/plasmodium-0782.xml\n", "Fixed ./annotation/plasmodium-1262.xml\n", "Fixed ./annotation/plasmodium-1760.xml\n", "Fixed ./annotation/plasmodium-0386.xml\n", "Fixed ./annotation/plasmodium-1203.xml\n", "Fixed ./annotation/plasmodium-0049.xml\n", "Fixed ./annotation/plasmodium-2627.xml\n", "Fixed ./annotation/plasmodium-1583.xml\n", "Fixed ./annotation/plasmodium-1087.xml\n", "Fixed ./annotation/plasmodium-1074.xml\n", "Fixed ./annotation/plasmodium-2289.xml\n", "Fixed ./annotation/plasmodium-2300.xml\n", "Fixed ./annotation/plasmodium-2477.xml\n", "Fixed ./annotation/plasmodium-1516.xml\n", "Fixed ./annotation/plasmodium-0257.xml\n", "Fixed ./annotation/plasmodium-0585.xml\n", "Fixed ./annotation/plasmodium-2682.xml\n", "Fixed ./annotation/plasmodium-2474.xml\n", "Fixed ./annotation/plasmodium-2052.xml\n", "Fixed ./annotation/plasmodium-0105.xml\n", "Fixed ./annotation/plasmodium-2523.xml\n", "Fixed ./annotation/plasmodium-0918.xml\n", "Fixed ./annotation/plasmodium-0065.xml\n", "Fixed ./annotation/plasmodium-2125.xml\n", "Fixed ./annotation/plasmodium-0930.xml\n", "Fixed ./annotation/plasmodium-0603.xml\n", "Fixed ./annotation/plasmodium-1950.xml\n", "Fixed ./annotation/plasmodium-2015.xml\n", "Fixed ./annotation/plasmodium-2203.xml\n", "Fixed ./annotation/plasmodium-2304.xml\n", "Fixed ./annotation/plasmodium-0664.xml\n", "Fixed ./annotation/plasmodium-1770.xml\n", "Fixed ./annotation/plasmodium-0861.xml\n", "Fixed ./annotation/plasmodium-1205.xml\n", "Fixed ./annotation/plasmodium-1817.xml\n", "Fixed ./annotation/plasmodium-1991.xml\n", "Fixed ./annotation/plasmodium-2567.xml\n", "Fixed ./annotation/plasmodium-2515.xml\n", "Fixed ./annotation/plasmodium-2123.xml\n", "Fixed ./annotation/plasmodium-0704.xml\n", "Fixed ./annotation/plasmodium-2692.xml\n", "Fixed ./annotation/plasmodium-0341.xml\n", "Fixed ./annotation/plasmodium-0964.xml\n", "Fixed ./annotation/plasmodium-0340.xml\n", "Fixed ./annotation/plasmodium-0292.xml\n", "Fixed ./annotation/plasmodium-1653.xml\n", "Fixed ./annotation/plasmodium-2601.xml\n", "Fixed ./annotation/plasmodium-1819.xml\n", "Fixed ./annotation/plasmodium-2055.xml\n", "Fixed ./annotation/plasmodium-0172.xml\n", "Fixed ./annotation/plasmodium-0422.xml\n", "Fixed ./annotation/plasmodium-0987.xml\n", "Fixed ./annotation/plasmodium-0303.xml\n", "Fixed ./annotation/plasmodium-2116.xml\n", "Fixed ./annotation/plasmodium-1738.xml\n", "Fixed ./annotation/plasmodium-1075.xml\n", "Fixed ./annotation/plasmodium-0133.xml\n", "Fixed ./annotation/plasmodium-0947.xml\n", "Fixed ./annotation/plasmodium-0648.xml\n", "Fixed ./annotation/plasmodium-0657.xml\n", "Fixed ./annotation/plasmodium-1191.xml\n", "Fixed ./annotation/plasmodium-0480.xml\n", "Fixed ./annotation/plasmodium-0379.xml\n", "Fixed ./annotation/plasmodium-1023.xml\n", "Fixed ./annotation/plasmodium-0354.xml\n", "Fixed ./annotation/plasmodium-0786.xml\n", "Fixed ./annotation/plasmodium-0561.xml\n", "Fixed ./annotation/plasmodium-2420.xml\n", "Fixed ./annotation/plasmodium-2530.xml\n", "Fixed ./annotation/plasmodium-0609.xml\n", "Fixed ./annotation/plasmodium-1934.xml\n", "Fixed ./annotation/plasmodium-0701.xml\n", "Fixed ./annotation/plasmodium-1387.xml\n", "Fixed ./annotation/plasmodium-2310.xml\n", "Fixed ./annotation/plasmodium-1189.xml\n", "Fixed ./annotation/plasmodium-1277.xml\n", "Fixed ./annotation/plasmodium-2581.xml\n", "Fixed ./annotation/plasmodium-1444.xml\n", "Fixed ./annotation/plasmodium-1636.xml\n", "Fixed ./annotation/plasmodium-1660.xml\n", "Fixed ./annotation/plasmodium-0764.xml\n", "Fixed ./annotation/plasmodium-0637.xml\n", "Fixed ./annotation/plasmodium-0400.xml\n", "Fixed ./annotation/plasmodium-1162.xml\n", "Fixed ./annotation/plasmodium-0575.xml\n", "Fixed ./annotation/plasmodium-2524.xml\n", "Fixed ./annotation/plasmodium-2097.xml\n", "Fixed ./annotation/plasmodium-0776.xml\n", "Fixed ./annotation/plasmodium-1870.xml\n", "Fixed ./annotation/plasmodium-2016.xml\n", "Fixed ./annotation/plasmodium-1174.xml\n", "Fixed ./annotation/plasmodium-0152.xml\n", "Fixed 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./annotation/plasmodium-1710.xml\n", "Fixed ./annotation/plasmodium-1888.xml\n", "Fixed ./annotation/plasmodium-2248.xml\n", "Fixed ./annotation/plasmodium-0199.xml\n", "Fixed ./annotation/plasmodium-2686.xml\n", "Fixed ./annotation/plasmodium-0276.xml\n", "Fixed ./annotation/plasmodium-2223.xml\n", "Fixed ./annotation/plasmodium-1901.xml\n", "Fixed ./annotation/plasmodium-1252.xml\n", "Fixed ./annotation/plasmodium-2486.xml\n", "Fixed ./annotation/plasmodium-1015.xml\n", "Fixed ./annotation/plasmodium-0044.xml\n", "Fixed ./annotation/plasmodium-0879.xml\n", "Fixed ./annotation/plasmodium-2643.xml\n", "Fixed ./annotation/plasmodium-0900.xml\n", "Fixed ./annotation/plasmodium-1351.xml\n", "Fixed ./annotation/plasmodium-1176.xml\n", "Fixed ./annotation/plasmodium-1882.xml\n", "Fixed ./annotation/plasmodium-1741.xml\n", "Fixed ./annotation/plasmodium-0059.xml\n", "Fixed ./annotation/plasmodium-1863.xml\n", "Fixed ./annotation/plasmodium-0830.xml\n", "Fixed ./annotation/plasmodium-0043.xml\n", "Fixed ./annotation/plasmodium-0343.xml\n", "Fixed ./annotation/plasmodium-2179.xml\n", "Fixed ./annotation/plasmodium-0223.xml\n", "Fixed ./annotation/plasmodium-0001.xml\n", "Fixed ./annotation/plasmodium-0302.xml\n", "Fixed ./annotation/plasmodium-2450.xml\n", "Fixed ./annotation/plasmodium-0390.xml\n", "Fixed ./annotation/plasmodium-1288.xml\n", "Fixed ./annotation/plasmodium-1255.xml\n", "Fixed ./annotation/plasmodium-2068.xml\n", "Fixed ./annotation/plasmodium-2152.xml\n", "Fixed ./annotation/plasmodium-2197.xml\n", "Fixed ./annotation/plasmodium-2151.xml\n", "Fixed ./annotation/plasmodium-1801.xml\n", "Fixed ./annotation/plasmodium-0730.xml\n", "Fixed ./annotation/plasmodium-0933.xml\n", "Fixed ./annotation/plasmodium-1258.xml\n", "Fixed ./annotation/plasmodium-1576.xml\n", "Fixed ./annotation/plasmodium-0046.xml\n", "Fixed ./annotation/plasmodium-0647.xml\n", "Fixed ./annotation/plasmodium-0951.xml\n", "Fixed ./annotation/plasmodium-2342.xml\n", "Fixed ./annotation/plasmodium-2153.xml\n", "Fixed ./annotation/plasmodium-1194.xml\n", "Fixed ./annotation/plasmodium-1692.xml\n", "Fixed ./annotation/plasmodium-0082.xml\n", "Fixed ./annotation/plasmodium-0284.xml\n", "Fixed ./annotation/plasmodium-2271.xml\n", "Fixed ./annotation/plasmodium-2103.xml\n", "Fixed ./annotation/plasmodium-0825.xml\n", "Fixed ./annotation/plasmodium-1319.xml\n", "Fixed ./annotation/plasmodium-2244.xml\n", "Fixed ./annotation/plasmodium-0713.xml\n", "Fixed ./annotation/plasmodium-1207.xml\n", "Fixed ./annotation/plasmodium-0425.xml\n", "Fixed ./annotation/plasmodium-1694.xml\n", "Fixed ./annotation/plasmodium-1512.xml\n", "Fixed ./annotation/plasmodium-0917.xml\n", "Fixed ./annotation/plasmodium-1369.xml\n", "Fixed ./annotation/plasmodium-1439.xml\n", "Fixed ./annotation/plasmodium-1039.xml\n", "Fixed ./annotation/plasmodium-0902.xml\n", "Fixed ./annotation/plasmodium-0180.xml\n", "Fixed ./annotation/plasmodium-1809.xml\n", "Fixed ./annotation/plasmodium-1867.xml\n", "Fixed ./annotation/plasmodium-2253.xml\n", "Fixed ./annotation/plasmodium-0040.xml\n", "Fixed ./annotation/plasmodium-0894.xml\n", "Fixed ./annotation/plasmodium-1776.xml\n", "Fixed ./annotation/plasmodium-2188.xml\n", "Fixed ./annotation/plasmodium-2303.xml\n", "Fixed ./annotation/plasmodium-0319.xml\n", "Fixed ./annotation/plasmodium-2322.xml\n", "Fixed ./annotation/plasmodium-0697.xml\n", "Fixed ./annotation/plasmodium-2478.xml\n", "Fixed ./annotation/plasmodium-2551.xml\n", "Fixed ./annotation/plasmodium-0412.xml\n", "Fixed ./annotation/plasmodium-0511.xml\n", "Fixed ./annotation/plasmodium-1762.xml\n", "Fixed ./annotation/plasmodium-0385.xml\n", "Fixed ./annotation/plasmodium-1965.xml\n", "Fixed ./annotation/plasmodium-2462.xml\n", "Fixed ./annotation/plasmodium-1161.xml\n", "Fixed ./annotation/plasmodium-0317.xml\n", "Fixed ./annotation/plasmodium-1241.xml\n", "Fixed ./annotation/plasmodium-0388.xml\n", "Fixed ./annotation/plasmodium-2547.xml\n", "Fixed ./annotation/plasmodium-2557.xml\n", "Fixed ./annotation/plasmodium-0574.xml\n", "Fixed ./annotation/plasmodium-1196.xml\n", "Fixed ./annotation/plasmodium-0671.xml\n", "Fixed ./annotation/plasmodium-0758.xml\n", "Fixed ./annotation/plasmodium-2040.xml\n", "Fixed ./annotation/plasmodium-2157.xml\n", "Fixed ./annotation/plasmodium-2332.xml\n", "Fixed ./annotation/plasmodium-0544.xml\n", "Fixed ./annotation/plasmodium-2410.xml\n", "Fixed ./annotation/plasmodium-1926.xml\n", "Fixed ./annotation/plasmodium-0224.xml\n", "Fixed ./annotation/plasmodium-0812.xml\n", "Fixed ./annotation/plasmodium-1064.xml\n", "Fixed ./annotation/plasmodium-1794.xml\n", "Fixed ./annotation/plasmodium-2467.xml\n", "Fixed ./annotation/plasmodium-1298.xml\n", "Fixed ./annotation/plasmodium-2174.xml\n", "Fixed ./annotation/plasmodium-0291.xml\n", "Fixed ./annotation/plasmodium-1749.xml\n", "Fixed 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./annotation/plasmodium-0689.xml\n", "Fixed ./annotation/plasmodium-0312.xml\n", "Fixed ./annotation/plasmodium-1137.xml\n", "Fixed ./annotation/plasmodium-0809.xml\n", "Fixed ./annotation/plasmodium-0610.xml\n", "Fixed ./annotation/plasmodium-0135.xml\n", "Fixed ./annotation/plasmodium-1613.xml\n", "Fixed ./annotation/plasmodium-1922.xml\n", "Fixed ./annotation/plasmodium-0127.xml\n", "Fixed ./annotation/plasmodium-2421.xml\n", "Fixed ./annotation/plasmodium-2630.xml\n", "Fixed ./annotation/plasmodium-0841.xml\n", "Fixed ./annotation/plasmodium-0696.xml\n", "Fixed ./annotation/plasmodium-1827.xml\n", "Fixed ./annotation/plasmodium-0194.xml\n", "Fixed ./annotation/plasmodium-0599.xml\n", "Fixed ./annotation/plasmodium-1265.xml\n", "Fixed ./annotation/plasmodium-1316.xml\n", "Fixed ./annotation/plasmodium-0848.xml\n", "Fixed ./annotation/plasmodium-2183.xml\n", "Fixed ./annotation/plasmodium-2552.xml\n", "Fixed ./annotation/plasmodium-0774.xml\n", "Fixed 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./annotation/plasmodium-1536.xml\n", "Fixed ./annotation/plasmodium-0510.xml\n", "Fixed ./annotation/plasmodium-0501.xml\n", "Fixed ./annotation/plasmodium-0508.xml\n", "Fixed ./annotation/plasmodium-0502.xml\n", "Fixed ./annotation/plasmodium-2428.xml\n", "Fixed ./annotation/plasmodium-0673.xml\n", "Fixed ./annotation/plasmodium-1458.xml\n", "Fixed ./annotation/plasmodium-1865.xml\n", "Fixed ./annotation/plasmodium-2431.xml\n", "Fixed ./annotation/plasmodium-2194.xml\n", "Fixed ./annotation/plasmodium-2426.xml\n", "Fixed ./annotation/plasmodium-1989.xml\n", "Fixed ./annotation/plasmodium-2334.xml\n", "Fixed ./annotation/plasmodium-0338.xml\n", "Fixed ./annotation/plasmodium-1902.xml\n", "Fixed ./annotation/plasmodium-0092.xml\n", "Fixed ./annotation/plasmodium-0326.xml\n", "Fixed ./annotation/plasmodium-0741.xml\n", "Fixed ./annotation/plasmodium-1517.xml\n", "Fixed ./annotation/plasmodium-2009.xml\n", "Fixed ./annotation/plasmodium-2032.xml\n", "Fixed ./annotation/plasmodium-1224.xml\n", "Fixed ./annotation/plasmodium-1357.xml\n", "Fixed ./annotation/plasmodium-2520.xml\n", "Fixed ./annotation/plasmodium-1667.xml\n", "Fixed ./annotation/plasmodium-0740.xml\n", "Fixed ./annotation/plasmodium-0532.xml\n", "Fixed ./annotation/plasmodium-1435.xml\n", "Fixed ./annotation/plasmodium-1031.xml\n", "Fixed ./annotation/plasmodium-2644.xml\n", "Fixed ./annotation/plasmodium-0623.xml\n", "Fixed ./annotation/plasmodium-1115.xml\n", "Fixed ./annotation/plasmodium-2111.xml\n", "Fixed ./annotation/plasmodium-0278.xml\n", "Fixed ./annotation/plasmodium-2691.xml\n", "Fixed ./annotation/plasmodium-1048.xml\n", "Fixed ./annotation/plasmodium-1251.xml\n", "Fixed ./annotation/plasmodium-2000.xml\n", "Fixed ./annotation/plasmodium-0870.xml\n", "Fixed ./annotation/plasmodium-0269.xml\n", "Fixed ./annotation/plasmodium-0507.xml\n", "Fixed ./annotation/plasmodium-0216.xml\n", "Fixed ./annotation/plasmodium-0638.xml\n", "Fixed ./annotation/plasmodium-2701.xml\n", "Fixed ./annotation/plasmodium-0666.xml\n", "Fixed ./annotation/plasmodium-0334.xml\n", "Fixed ./annotation/plasmodium-0311.xml\n", "Fixed ./annotation/plasmodium-1111.xml\n", "Fixed ./annotation/plasmodium-0936.xml\n", "Fixed ./annotation/plasmodium-0955.xml\n", "Fixed ./annotation/plasmodium-1930.xml\n", "Fixed ./annotation/plasmodium-0405.xml\n", "Fixed ./annotation/plasmodium-0674.xml\n", "Fixed ./annotation/plasmodium-1215.xml\n", "Fixed ./annotation/plasmodium-2560.xml\n", "Fixed ./annotation/plasmodium-1069.xml\n", "Fixed ./annotation/plasmodium-0834.xml\n", "Fixed ./annotation/plasmodium-1913.xml\n", "Fixed ./annotation/plasmodium-0835.xml\n", "Fixed ./annotation/plasmodium-0509.xml\n", "Fixed ./annotation/plasmodium-1838.xml\n", "Fixed ./annotation/plasmodium-2235.xml\n", "Fixed ./annotation/plasmodium-0880.xml\n", "Fixed ./annotation/plasmodium-0336.xml\n", "Fixed ./annotation/plasmodium-0121.xml\n", "Fixed ./annotation/plasmodium-1283.xml\n", "Fixed ./annotation/plasmodium-0709.xml\n", "Fixed ./annotation/plasmodium-0246.xml\n", "Fixed ./annotation/plasmodium-0251.xml\n", "Fixed ./annotation/plasmodium-2400.xml\n", "Fixed ./annotation/plasmodium-2364.xml\n", "Fixed ./annotation/plasmodium-2570.xml\n", "Fixed ./annotation/plasmodium-2446.xml\n", "Fixed ./annotation/plasmodium-0527.xml\n", "Fixed ./annotation/plasmodium-0051.xml\n", "Fixed ./annotation/plasmodium-2319.xml\n", "Fixed ./annotation/plasmodium-0252.xml\n", "Fixed ./annotation/plasmodium-2541.xml\n", "Fixed ./annotation/plasmodium-1593.xml\n", "Fixed ./annotation/plasmodium-0927.xml\n", "Fixed ./annotation/plasmodium-1373.xml\n", "Fixed ./annotation/plasmodium-1290.xml\n", "Fixed ./annotation/plasmodium-1981.xml\n", "Fixed ./annotation/plasmodium-1417.xml\n", "Fixed ./annotation/plasmodium-2633.xml\n", "Fixed ./annotation/plasmodium-0178.xml\n", "Fixed ./annotation/plasmodium-1579.xml\n", "Fixed ./annotation/plasmodium-1494.xml\n", "Fixed ./annotation/plasmodium-0071.xml\n", "Fixed ./annotation/plasmodium-2527.xml\n", "Fixed ./annotation/plasmodium-1688.xml\n", "Fixed ./annotation/plasmodium-2419.xml\n", "Fixed ./annotation/plasmodium-2144.xml\n", "Fixed ./annotation/plasmodium-2355.xml\n", "Fixed ./annotation/plasmodium-1418.xml\n", "Fixed ./annotation/plasmodium-0789.xml\n", "Fixed ./annotation/plasmodium-0815.xml\n", "Fixed ./annotation/plasmodium-0728.xml\n", "Fixed ./annotation/plasmodium-1834.xml\n", "Fixed ./annotation/plasmodium-2056.xml\n", "Fixed ./annotation/plasmodium-2595.xml\n", "Fixed ./annotation/plasmodium-0207.xml\n", "Fixed ./annotation/plasmodium-1706.xml\n", "Fixed ./annotation/plasmodium-2195.xml\n", "Fixed ./annotation/plasmodium-2238.xml\n", "Fixed ./annotation/plasmodium-0707.xml\n", "Fixed ./annotation/plasmodium-1047.xml\n", "Fixed ./annotation/plasmodium-1948.xml\n", "Fixed ./annotation/plasmodium-1664.xml\n", "Fixed ./annotation/plasmodium-0453.xml\n", "Fixed ./annotation/plasmodium-0615.xml\n", "Fixed ./annotation/plasmodium-2517.xml\n", "Fixed ./annotation/plasmodium-0399.xml\n", "Fixed ./annotation/plasmodium-0144.xml\n", "Fixed ./annotation/plasmodium-2141.xml\n", "Fixed ./annotation/plasmodium-2159.xml\n", "Fixed ./annotation/plasmodium-1920.xml\n", "Fixed ./annotation/plasmodium-2611.xml\n", "Fixed ./annotation/plasmodium-0475.xml\n", "Fixed ./annotation/plasmodium-0798.xml\n", "Fixed ./annotation/plasmodium-2617.xml\n", "Fixed ./annotation/plasmodium-2669.xml\n", "Fixed ./annotation/plasmodium-2199.xml\n", "Fixed ./annotation/plasmodium-1227.xml\n", "Fixed ./annotation/plasmodium-1186.xml\n", "Fixed ./annotation/plasmodium-1399.xml\n", "Fixed ./annotation/plasmodium-1405.xml\n", "Fixed ./annotation/plasmodium-0903.xml\n", "Fixed ./annotation/plasmodium-2533.xml\n", "Fixed ./annotation/plasmodium-1380.xml\n", "Fixed ./annotation/plasmodium-0205.xml\n", "Fixed ./annotation/plasmodium-1779.xml\n", "Fixed ./annotation/plasmodium-2374.xml\n", "Fixed ./annotation/plasmodium-2373.xml\n", "Fixed ./annotation/plasmodium-2359.xml\n", "Fixed ./annotation/plasmodium-1765.xml\n", "Fixed ./annotation/plasmodium-2298.xml\n", "Fixed ./annotation/plasmodium-0823.xml\n", "Fixed ./annotation/plasmodium-1637.xml\n", "Fixed ./annotation/plasmodium-1975.xml\n", "Fixed ./annotation/plasmodium-1122.xml\n", "Fixed ./annotation/plasmodium-1682.xml\n", "Fixed ./annotation/plasmodium-0061.xml\n", "Fixed ./annotation/plasmodium-1067.xml\n", "Fixed ./annotation/plasmodium-0720.xml\n", "Fixed ./annotation/plasmodium-1843.xml\n", "Fixed ./annotation/plasmodium-0686.xml\n", "Fixed ./annotation/plasmodium-1547.xml\n", "Fixed ./annotation/plasmodium-0598.xml\n", "Fixed ./annotation/plasmodium-0242.xml\n", "Fixed ./annotation/plasmodium-2265.xml\n", "Fixed ./annotation/plasmodium-1120.xml\n", "Fixed ./annotation/plasmodium-0700.xml\n", "Fixed ./annotation/plasmodium-1216.xml\n", "Fixed ./annotation/plasmodium-2137.xml\n", "Fixed ./annotation/plasmodium-0547.xml\n", "Fixed ./annotation/plasmodium-2556.xml\n", "Fixed ./annotation/plasmodium-2555.xml\n", "Fixed ./annotation/plasmodium-0192.xml\n", "Fixed ./annotation/plasmodium-2308.xml\n", "Fixed ./annotation/plasmodium-0922.xml\n", "Fixed ./annotation/plasmodium-1906.xml\n", "Fixed ./annotation/plasmodium-2563.xml\n", "Fixed ./annotation/plasmodium-1008.xml\n", "Fixed ./annotation/plasmodium-0322.xml\n", "Fixed ./annotation/plasmodium-1249.xml\n", "Fixed ./annotation/plasmodium-2609.xml\n", "Fixed ./annotation/plasmodium-2059.xml\n", "Fixed ./annotation/plasmodium-1375.xml\n", "Fixed ./annotation/plasmodium-2158.xml\n", "Fixed ./annotation/plasmodium-0408.xml\n", "Fixed ./annotation/plasmodium-1804.xml\n", "Fixed ./annotation/plasmodium-0702.xml\n", "Fixed ./annotation/plasmodium-1208.xml\n", "Fixed ./annotation/plasmodium-0380.xml\n", "Fixed ./annotation/plasmodium-1144.xml\n", "Fixed ./annotation/plasmodium-0413.xml\n", "Fixed ./annotation/plasmodium-1514.xml\n", "Fixed ./annotation/plasmodium-1447.xml\n", "Fixed ./annotation/plasmodium-2623.xml\n", "Fixed ./annotation/plasmodium-1557.xml\n", "Fixed ./annotation/plasmodium-2687.xml\n", "Fixed ./annotation/plasmodium-2201.xml\n", "Fixed ./annotation/plasmodium-0694.xml\n", "Fixed ./annotation/plasmodium-2510.xml\n", "Fixed ./annotation/plasmodium-1242.xml\n", "Fixed ./annotation/plasmodium-0262.xml\n", "Fixed ./annotation/plasmodium-0920.xml\n", "Fixed ./annotation/plasmodium-2228.xml\n", "Fixed ./annotation/plasmodium-0320.xml\n", "Fixed ./annotation/plasmodium-0607.xml\n", "Fixed ./annotation/plasmodium-0346.xml\n", "Fixed ./annotation/plasmodium-1546.xml\n", "Fixed ./annotation/plasmodium-1877.xml\n", "Fixed ./annotation/plasmodium-2130.xml\n", "Fixed ./annotation/plasmodium-0801.xml\n", "Fixed ./annotation/plasmodium-2313.xml\n", "Fixed 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./annotation/plasmodium-2382.xml\n", "Fixed ./annotation/plasmodium-0937.xml\n", "Fixed ./annotation/plasmodium-1914.xml\n", "Fixed ./annotation/plasmodium-0602.xml\n", "Fixed ./annotation/plasmodium-1261.xml\n", "Fixed ./annotation/plasmodium-1377.xml\n", "Fixed ./annotation/plasmodium-1630.xml\n", "Fixed ./annotation/plasmodium-2196.xml\n", "Fixed ./annotation/plasmodium-1033.xml\n", "Fixed ./annotation/plasmodium-1833.xml\n", "Fixed ./annotation/plasmodium-1445.xml\n", "Fixed ./annotation/plasmodium-2597.xml\n", "Fixed ./annotation/plasmodium-2362.xml\n", "Fixed ./annotation/plasmodium-0972.xml\n", "Fixed ./annotation/plasmodium-0423.xml\n", "Fixed ./annotation/plasmodium-1606.xml\n", "Fixed ./annotation/plasmodium-1700.xml\n", "Fixed ./annotation/plasmodium-2488.xml\n", "Fixed ./annotation/plasmodium-2046.xml\n", "Fixed ./annotation/plasmodium-1090.xml\n", "Fixed ./annotation/plasmodium-2593.xml\n", "Fixed ./annotation/plasmodium-1941.xml\n", "Fixed 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./annotation/plasmodium-2175.xml\n", "Fixed ./annotation/plasmodium-2173.xml\n", "Fixed ./annotation/plasmodium-1608.xml\n", "Fixed ./annotation/plasmodium-0211.xml\n", "Fixed ./annotation/plasmodium-1704.xml\n", "Fixed ./annotation/plasmodium-1903.xml\n", "Fixed ./annotation/plasmodium-1621.xml\n", "Fixed ./annotation/plasmodium-1469.xml\n", "Fixed ./annotation/plasmodium-1228.xml\n", "Fixed ./annotation/plasmodium-1292.xml\n", "Fixed ./annotation/plasmodium-1477.xml\n", "Fixed ./annotation/plasmodium-2542.xml\n", "Fixed ./annotation/plasmodium-2003.xml\n", "Fixed ./annotation/plasmodium-1209.xml\n", "Fixed ./annotation/plasmodium-2466.xml\n", "Fixed ./annotation/plasmodium-1361.xml\n", "Fixed ./annotation/plasmodium-1896.xml\n", "Fixed ./annotation/plasmodium-1182.xml\n", "Fixed ./annotation/plasmodium-1663.xml\n", "Fixed ./annotation/plasmodium-2383.xml\n", "Fixed ./annotation/plasmodium-2628.xml\n", "Fixed ./annotation/plasmodium-2658.xml\n", "Fixed ./annotation/plasmodium-2640.xml\n", "Fixed ./annotation/plasmodium-1841.xml\n", "Fixed ./annotation/plasmodium-2312.xml\n", "Fixed ./annotation/plasmodium-2629.xml\n", "Fixed ./annotation/plasmodium-0856.xml\n", "Fixed ./annotation/plasmodium-2405.xml\n", "Fixed ./annotation/plasmodium-0759.xml\n", "Fixed ./annotation/plasmodium-1371.xml\n", "Fixed ./annotation/plasmodium-0193.xml\n", "Fixed ./annotation/plasmodium-2702.xml\n", "Fixed ./annotation/plasmodium-2051.xml\n", "Fixed ./annotation/plasmodium-0295.xml\n", "Fixed ./annotation/plasmodium-2480.xml\n", "Fixed ./annotation/plasmodium-2222.xml\n", "Fixed ./annotation/plasmodium-1322.xml\n", "Fixed ./annotation/plasmodium-2411.xml\n", "Fixed ./annotation/plasmodium-0949.xml\n", "Fixed ./annotation/plasmodium-0184.xml\n", "Fixed ./annotation/plasmodium-1421.xml\n", "Fixed ./annotation/plasmodium-1423.xml\n", "Fixed ./annotation/plasmodium-0497.xml\n", "Fixed ./annotation/plasmodium-1716.xml\n", "Fixed 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./annotation/plasmodium-2156.xml\n", "Fixed ./annotation/plasmodium-0925.xml\n", "Fixed ./annotation/plasmodium-2472.xml\n", "Fixed ./annotation/plasmodium-0137.xml\n", "Fixed ./annotation/plasmodium-0323.xml\n", "Fixed ./annotation/plasmodium-2418.xml\n", "Fixed ./annotation/plasmodium-1382.xml\n", "Fixed ./annotation/plasmodium-1345.xml\n", "Fixed ./annotation/plasmodium-0304.xml\n", "Fixed ./annotation/plasmodium-2044.xml\n", "Fixed ./annotation/plasmodium-0840.xml\n", "Fixed ./annotation/plasmodium-1440.xml\n", "Fixed ./annotation/plasmodium-0928.xml\n", "Fixed ./annotation/plasmodium-1929.xml\n", "Fixed ./annotation/plasmodium-2518.xml\n", "Fixed ./annotation/plasmodium-2654.xml\n", "Fixed ./annotation/plasmodium-2062.xml\n", "Fixed ./annotation/plasmodium-1521.xml\n", "Fixed ./annotation/plasmodium-1433.xml\n", "Fixed ./annotation/plasmodium-1489.xml\n", "Fixed ./annotation/plasmodium-1363.xml\n", "Fixed ./annotation/plasmodium-0967.xml\n", "Fixed ./annotation/plasmodium-0613.xml\n", "Fixed ./annotation/plasmodium-1567.xml\n", "Fixed ./annotation/plasmodium-0983.xml\n", "Fixed ./annotation/plasmodium-2142.xml\n", "Fixed ./annotation/plasmodium-1789.xml\n", "Fixed ./annotation/plasmodium-1155.xml\n", "Fixed ./annotation/plasmodium-1254.xml\n", "Fixed ./annotation/plasmodium-2435.xml\n", "Fixed ./annotation/plasmodium-1468.xml\n", "Fixed ./annotation/plasmodium-2476.xml\n", "Fixed ./annotation/plasmodium-1508.xml\n", "Fixed ./annotation/plasmodium-2240.xml\n", "Fixed ./annotation/plasmodium-0821.xml\n", "Fixed ./annotation/plasmodium-1225.xml\n", "Fixed ./annotation/plasmodium-1066.xml\n", "Fixed ./annotation/plasmodium-0150.xml\n", "Fixed ./annotation/plasmodium-2026.xml\n", "Fixed ./annotation/plasmodium-2268.xml\n", "Fixed ./annotation/plasmodium-0036.xml\n", "Fixed ./annotation/plasmodium-0611.xml\n", "Fixed ./annotation/plasmodium-1711.xml\n", "Fixed ./annotation/plasmodium-2613.xml\n", "Fixed ./annotation/plasmodium-0977.xml\n", "Fixed ./annotation/plasmodium-1391.xml\n", "Fixed ./annotation/plasmodium-1286.xml\n", "Fixed ./annotation/plasmodium-1499.xml\n", "Fixed ./annotation/plasmodium-1181.xml\n", "Fixed ./annotation/plasmodium-1237.xml\n", "Fixed ./annotation/plasmodium-1797.xml\n", "Fixed ./annotation/plasmodium-0994.xml\n", "Fixed ./annotation/plasmodium-1329.xml\n", "Fixed ./annotation/plasmodium-1702.xml\n", "Fixed ./annotation/plasmodium-1652.xml\n", "Fixed ./annotation/plasmodium-0000.xml\n", "Fixed ./annotation/plasmodium-2545.xml\n", "Fixed ./annotation/plasmodium-0874.xml\n", "Fixed ./annotation/plasmodium-0164.xml\n", "Fixed ./annotation/plasmodium-1201.xml\n", "Fixed ./annotation/plasmodium-2652.xml\n", "Fixed ./annotation/plasmodium-1185.xml\n", "Fixed ./annotation/plasmodium-0678.xml\n", "Fixed ./annotation/plasmodium-1145.xml\n", "Fixed ./annotation/plasmodium-2212.xml\n", "Fixed ./annotation/plasmodium-0188.xml\n", "Fixed ./annotation/plasmodium-0245.xml\n", "Fixed ./annotation/plasmodium-1388.xml\n", "Fixed ./annotation/plasmodium-2181.xml\n", "Fixed ./annotation/plasmodium-2338.xml\n", "Fixed ./annotation/plasmodium-1114.xml\n", "Fixed ./annotation/plasmodium-2138.xml\n", "Fixed ./annotation/plasmodium-0273.xml\n", "Fixed ./annotation/plasmodium-1308.xml\n", "Fixed ./annotation/plasmodium-1959.xml\n", "Fixed ./annotation/plasmodium-2136.xml\n", "Fixed ./annotation/plasmodium-0018.xml\n", "Fixed ./annotation/plasmodium-0555.xml\n", "Fixed ./annotation/plasmodium-0337.xml\n", "Fixed ./annotation/plasmodium-2224.xml\n", "Fixed ./annotation/plasmodium-2393.xml\n", "Fixed ./annotation/plasmodium-0596.xml\n", "Fixed ./annotation/plasmodium-1359.xml\n", "Fixed ./annotation/plasmodium-0367.xml\n", "Fixed ./annotation/plasmodium-2166.xml\n", "Fixed ./annotation/plasmodium-1936.xml\n", "Fixed ./annotation/plasmodium-0118.xml\n", "Fixed ./annotation/plasmodium-1745.xml\n", "Fixed ./annotation/plasmodium-1199.xml\n", "Fixed ./annotation/plasmodium-1511.xml\n", "Fixed ./annotation/plasmodium-2494.xml\n", "Fixed ./annotation/plasmodium-2678.xml\n", "Fixed ./annotation/plasmodium-1671.xml\n", "Fixed ./annotation/plasmodium-2606.xml\n", "Fixed ./annotation/plasmodium-1830.xml\n", "Fixed ./annotation/plasmodium-1871.xml\n", "Fixed ./annotation/plasmodium-2178.xml\n", "Fixed ./annotation/plasmodium-0455.xml\n", "Fixed ./annotation/plasmodium-0163.xml\n", "Fixed ./annotation/plasmodium-1784.xml\n", "Fixed ./annotation/plasmodium-2202.xml\n", "Fixed ./annotation/plasmodium-2079.xml\n", "Fixed ./annotation/plasmodium-0581.xml\n", "Fixed ./annotation/plasmodium-2693.xml\n", "Fixed ./annotation/plasmodium-0842.xml\n", "Fixed ./annotation/plasmodium-2679.xml\n", "Fixed ./annotation/plasmodium-0523.xml\n", "Fixed ./annotation/plasmodium-2388.xml\n", "Fixed ./annotation/plasmodium-1314.xml\n", "Fixed ./annotation/plasmodium-0013.xml\n", "Fixed ./annotation/plasmodium-1178.xml\n", "Fixed ./annotation/plasmodium-1999.xml\n", "Fixed ./annotation/plasmodium-0804.xml\n", "Fixed ./annotation/plasmodium-2489.xml\n", "Fixed ./annotation/plasmodium-1568.xml\n", "Fixed ./annotation/plasmodium-1894.xml\n", "Fixed ./annotation/plasmodium-0519.xml\n", "Fixed ./annotation/plasmodium-1715.xml\n", "Fixed ./annotation/plasmodium-0763.xml\n", "Fixed ./annotation/plasmodium-1821.xml\n", "Fixed ./annotation/plasmodium-0023.xml\n", "Fixed ./annotation/plasmodium-2504.xml\n", "Fixed ./annotation/plasmodium-0737.xml\n", "Fixed ./annotation/plasmodium-1506.xml\n", "Fixed ./annotation/plasmodium-1768.xml\n", "Fixed ./annotation/plasmodium-2114.xml\n", "Fixed ./annotation/plasmodium-0373.xml\n", "Fixed ./annotation/plasmodium-0440.xml\n", "Fixed ./annotation/plasmodium-2526.xml\n", "Fixed ./annotation/plasmodium-0444.xml\n", "Fixed ./annotation/plasmodium-0287.xml\n", "Fixed ./annotation/plasmodium-2468.xml\n", "Fixed ./annotation/plasmodium-1414.xml\n", "Fixed ./annotation/plasmodium-1139.xml\n", "Fixed ./annotation/plasmodium-1955.xml\n", "Fixed ./annotation/plasmodium-2211.xml\n", "Fixed ./annotation/plasmodium-1296.xml\n", "Fixed ./annotation/plasmodium-2163.xml\n", "Fixed ./annotation/plasmodium-1822.xml\n", "Fixed ./annotation/plasmodium-2315.xml\n", "Fixed ./annotation/plasmodium-2371.xml\n", "Fixed ./annotation/plasmodium-0533.xml\n", "Fixed ./annotation/plasmodium-0975.xml\n", "Fixed ./annotation/plasmodium-1022.xml\n", "Fixed ./annotation/plasmodium-1119.xml\n", "Fixed ./annotation/plasmodium-2167.xml\n", "Fixed ./annotation/plasmodium-2343.xml\n", "Fixed ./annotation/plasmodium-1493.xml\n", "Fixed ./annotation/plasmodium-0651.xml\n", "Fixed ./annotation/plasmodium-0537.xml\n", "Fixed ./annotation/plasmodium-1910.xml\n", "Fixed ./annotation/plasmodium-1616.xml\n", "Fixed ./annotation/plasmodium-0865.xml\n", "Fixed ./annotation/plasmodium-2237.xml\n", "Fixed ./annotation/plasmodium-0992.xml\n", "Fixed ./annotation/plasmodium-1723.xml\n", "Fixed ./annotation/plasmodium-0151.xml\n", "Fixed ./annotation/plasmodium-2349.xml\n", "Fixed ./annotation/plasmodium-1527.xml\n", "Fixed ./annotation/plasmodium-0807.xml\n", "Fixed ./annotation/plasmodium-1095.xml\n", "Fixed ./annotation/plasmodium-1412.xml\n", "Fixed ./annotation/plasmodium-0978.xml\n", "Fixed ./annotation/plasmodium-0350.xml\n", "Fixed ./annotation/plasmodium-2184.xml\n", "Fixed ./annotation/plasmodium-1856.xml\n", "Fixed ./annotation/plasmodium-1848.xml\n", "Fixed ./annotation/plasmodium-1295.xml\n", "Fixed ./annotation/plasmodium-1021.xml\n", "Fixed ./annotation/plasmodium-2133.xml\n", "Fixed ./annotation/plasmodium-0238.xml\n", "Fixed ./annotation/plasmodium-0143.xml\n", "Fixed ./annotation/plasmodium-0760.xml\n", "Fixed ./annotation/plasmodium-2566.xml\n", "Fixed ./annotation/plasmodium-0873.xml\n", "Fixed ./annotation/plasmodium-0869.xml\n", "Fixed ./annotation/plasmodium-1355.xml\n", "Fixed ./annotation/plasmodium-2104.xml\n", "Fixed ./annotation/plasmodium-1552.xml\n", "Fixed ./annotation/plasmodium-1187.xml\n", "Fixed ./annotation/plasmodium-1010.xml\n", "Fixed ./annotation/plasmodium-1786.xml\n", "Fixed ./annotation/plasmodium-1689.xml\n", "Fixed ./annotation/plasmodium-0719.xml\n", "Fixed ./annotation/plasmodium-0535.xml\n", "Fixed ./annotation/plasmodium-0976.xml\n", "Fixed ./annotation/plasmodium-2263.xml\n", "Fixed ./annotation/plasmodium-2008.xml\n", "Fixed ./annotation/plasmodium-1395.xml\n", "Fixed ./annotation/plasmodium-0490.xml\n", "Fixed ./annotation/plasmodium-0876.xml\n", "Fixed ./annotation/plasmodium-0122.xml\n", "Fixed ./annotation/plasmodium-0391.xml\n", "Fixed ./annotation/plasmodium-1272.xml\n", "Fixed ./annotation/plasmodium-1676.xml\n", "Fixed ./annotation/plasmodium-0839.xml\n", "Fixed ./annotation/plasmodium-1297.xml\n", "Fixed ./annotation/plasmodium-1103.xml\n", "Fixed ./annotation/plasmodium-0383.xml\n", "Fixed ./annotation/plasmodium-2461.xml\n", "Fixed ./annotation/plasmodium-1966.xml\n", "Fixed ./annotation/plasmodium-2493.xml\n", "Fixed ./annotation/plasmodium-0652.xml\n", "Fixed ./annotation/plasmodium-0744.xml\n", "Fixed ./annotation/plasmodium-0028.xml\n", "Fixed ./annotation/plasmodium-2379.xml\n", "Fixed ./annotation/plasmodium-0111.xml\n", "Fixed ./annotation/plasmodium-0667.xml\n", "Fixed ./annotation/plasmodium-1622.xml\n", "Fixed ./annotation/plasmodium-1724.xml\n", "Fixed ./annotation/plasmodium-0622.xml\n", "Fixed ./annotation/plasmodium-2215.xml\n", "Fixed ./annotation/plasmodium-0926.xml\n", "Fixed ./annotation/plasmodium-0039.xml\n", "Fixed ./annotation/plasmodium-0008.xml\n", "Fixed ./annotation/plasmodium-1958.xml\n", "Fixed ./annotation/plasmodium-0132.xml\n", "Fixed ./annotation/plasmodium-1541.xml\n", "Fixed ./annotation/plasmodium-1264.xml\n", "Fixed ./annotation/plasmodium-0521.xml\n", "Fixed ./annotation/plasmodium-2336.xml\n", "Fixed ./annotation/plasmodium-0204.xml\n", "Fixed ./annotation/plasmodium-0283.xml\n", "Fixed ./annotation/plasmodium-2299.xml\n", "Fixed ./annotation/plasmodium-1019.xml\n", "Fixed ./annotation/plasmodium-2329.xml\n", "Fixed ./annotation/plasmodium-0525.xml\n", "Fixed ./annotation/plasmodium-2677.xml\n", "Fixed ./annotation/plasmodium-1167.xml\n", "Fixed ./annotation/plasmodium-1993.xml\n", "Fixed ./annotation/plasmodium-1117.xml\n", "Fixed ./annotation/plasmodium-0518.xml\n", "Fixed ./annotation/plasmodium-0772.xml\n", "Fixed ./annotation/plasmodium-1658.xml\n", "Fixed ./annotation/plasmodium-2667.xml\n", "Fixed ./annotation/plasmodium-0371.xml\n", "Fixed ./annotation/plasmodium-1336.xml\n", "Fixed ./annotation/plasmodium-0374.xml\n", "Fixed ./annotation/plasmodium-1591.xml\n", "Fixed ./annotation/plasmodium-2398.xml\n", "Fixed ./annotation/plasmodium-1356.xml\n", "Fixed ./annotation/plasmodium-1406.xml\n", "Fixed 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./annotation/plasmodium-0196.xml\n", "Fixed ./annotation/plasmodium-1099.xml\n", "Fixed ./annotation/plasmodium-1038.xml\n", "Fixed ./annotation/plasmodium-1461.xml\n", "Fixed ./annotation/plasmodium-1472.xml\n", "Fixed ./annotation/plasmodium-0300.xml\n", "Fixed ./annotation/plasmodium-0641.xml\n", "Fixed ./annotation/plasmodium-0612.xml\n", "Fixed ./annotation/plasmodium-0218.xml\n", "Fixed ./annotation/plasmodium-0214.xml\n", "Fixed ./annotation/plasmodium-2602.xml\n", "Fixed ./annotation/plasmodium-2150.xml\n", "Fixed ./annotation/plasmodium-0222.xml\n", "Fixed ./annotation/plasmodium-1226.xml\n", "Fixed ./annotation/plasmodium-1157.xml\n", "Fixed ./annotation/plasmodium-2306.xml\n", "Fixed ./annotation/plasmodium-0064.xml\n", "Fixed ./annotation/plasmodium-0457.xml\n", "Fixed ./annotation/plasmodium-2316.xml\n", "Fixed ./annotation/plasmodium-0985.xml\n", "Fixed ./annotation/plasmodium-1190.xml\n", "Fixed ./annotation/plasmodium-0249.xml\n", "Fixed 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./annotation/plasmodium-1121.xml\n", "Fixed ./annotation/plasmodium-2324.xml\n", "Fixed ./annotation/plasmodium-0762.xml\n", "Fixed ./annotation/plasmodium-1397.xml\n", "Fixed ./annotation/plasmodium-0140.xml\n", "Fixed ./annotation/plasmodium-1500.xml\n", "Fixed ./annotation/plasmodium-0520.xml\n", "Fixed ./annotation/plasmodium-1062.xml\n", "Fixed ./annotation/plasmodium-0833.xml\n", "Fixed ./annotation/plasmodium-0539.xml\n", "Fixed ./annotation/plasmodium-0410.xml\n", "Fixed ./annotation/plasmodium-2082.xml\n", "Fixed ./annotation/plasmodium-1880.xml\n", "Fixed ./annotation/plasmodium-1079.xml\n", "Fixed ./annotation/plasmodium-0052.xml\n", "Fixed ./annotation/plasmodium-0126.xml\n", "Fixed ./annotation/plasmodium-0939.xml\n", "Fixed ./annotation/plasmodium-0173.xml\n", "Fixed ./annotation/plasmodium-0458.xml\n", "Fixed ./annotation/plasmodium-1011.xml\n", "Fixed ./annotation/plasmodium-0243.xml\n", "Fixed ./annotation/plasmodium-1927.xml\n", "Fixed ./annotation/plasmodium-2218.xml\n", "Fixed ./annotation/plasmodium-0488.xml\n", "Fixed ./annotation/plasmodium-0749.xml\n", "Fixed ./annotation/plasmodium-1737.xml\n", "Fixed ./annotation/plasmodium-2225.xml\n", "Fixed ./annotation/plasmodium-0677.xml\n", "Fixed ./annotation/plasmodium-1641.xml\n", "Fixed ./annotation/plasmodium-2132.xml\n", "Fixed ./annotation/plasmodium-1526.xml\n", "Fixed ./annotation/plasmodium-0237.xml\n", "Fixed ./annotation/plasmodium-2605.xml\n", "Fixed ./annotation/plasmodium-0735.xml\n", "Fixed ./annotation/plasmodium-0115.xml\n", "Fixed ./annotation/plasmodium-0857.xml\n", "Fixed ./annotation/plasmodium-2314.xml\n", "Fixed ./annotation/plasmodium-0924.xml\n", "Fixed ./annotation/plasmodium-0906.xml\n", "Fixed ./annotation/plasmodium-1343.xml\n", "Fixed ./annotation/plasmodium-0136.xml\n", "Fixed ./annotation/plasmodium-1540.xml\n", "Fixed ./annotation/plasmodium-0191.xml\n", "Fixed ./annotation/plasmodium-1183.xml\n", "Fixed ./annotation/plasmodium-2187.xml\n", "Fixed ./annotation/plasmodium-1402.xml\n", "Fixed ./annotation/plasmodium-0297.xml\n", "Fixed ./annotation/plasmodium-1598.xml\n", "Fixed ./annotation/plasmodium-1612.xml\n", "Fixed ./annotation/plasmodium-1441.xml\n", "Fixed ./annotation/plasmodium-2512.xml\n", "Fixed ./annotation/plasmodium-1279.xml\n", "Fixed ./annotation/plasmodium-0837.xml\n", "Fixed ./annotation/plasmodium-0253.xml\n", "Fixed ./annotation/plasmodium-1674.xml\n", "Fixed ./annotation/plasmodium-0959.xml\n", "Fixed ./annotation/plasmodium-1581.xml\n", "Fixed ./annotation/plasmodium-0147.xml\n", "Fixed ./annotation/plasmodium-2655.xml\n", "Fixed ./annotation/plasmodium-2139.xml\n", "Fixed ./annotation/plasmodium-0119.xml\n", "Fixed ./annotation/plasmodium-2590.xml\n", "Fixed ./annotation/plasmodium-1752.xml\n", "Fixed ./annotation/plasmodium-0912.xml\n", "Fixed ./annotation/plasmodium-0220.xml\n", "Fixed ./annotation/plasmodium-1301.xml\n", "Fixed ./annotation/plasmodium-2035.xml\n", "Fixed ./annotation/plasmodium-0534.xml\n", "Fixed ./annotation/plasmodium-0545.xml\n", "Fixed ./annotation/plasmodium-2330.xml\n", "Fixed ./annotation/plasmodium-0130.xml\n", "Fixed ./annotation/plasmodium-2311.xml\n", "Fixed ./annotation/plasmodium-1333.xml\n", "Fixed ./annotation/plasmodium-0366.xml\n", "Fixed ./annotation/plasmodium-0586.xml\n", "Fixed ./annotation/plasmodium-2445.xml\n", "Fixed ./annotation/plasmodium-1232.xml\n", "Fixed ./annotation/plasmodium-0128.xml\n", "Fixed ./annotation/plasmodium-1634.xml\n", "Fixed ./annotation/plasmodium-1650.xml\n", "Fixed ./annotation/plasmodium-1918.xml\n", "Fixed ./annotation/plasmodium-2690.xml\n", "Fixed ./annotation/plasmodium-2600.xml\n", "Fixed ./annotation/plasmodium-1429.xml\n", "Fixed ./annotation/plasmodium-2439.xml\n", "Fixed ./annotation/plasmodium-2213.xml\n", "Fixed ./annotation/plasmodium-2323.xml\n", "Fixed ./annotation/plasmodium-2043.xml\n", "Fixed 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./annotation/plasmodium-1897.xml\n", "Fixed ./annotation/plasmodium-1859.xml\n", "Fixed ./annotation/plasmodium-1300.xml\n", "Fixed ./annotation/plasmodium-1128.xml\n", "Fixed ./annotation/plasmodium-0560.xml\n", "Fixed ./annotation/plasmodium-1096.xml\n", "Fixed ./annotation/plasmodium-2377.xml\n", "Fixed ./annotation/plasmodium-0432.xml\n", "Fixed ./annotation/plasmodium-1077.xml\n", "Fixed ./annotation/plasmodium-1626.xml\n", "Fixed ./annotation/plasmodium-2514.xml\n", "Fixed ./annotation/plasmodium-0950.xml\n", "Fixed ./annotation/plasmodium-1028.xml\n", "Fixed ./annotation/plasmodium-2684.xml\n", "Fixed ./annotation/plasmodium-1793.xml\n", "Fixed ./annotation/plasmodium-2369.xml\n", "Fixed ./annotation/plasmodium-0591.xml\n", "Fixed ./annotation/plasmodium-2034.xml\n", "Fixed ./annotation/plasmodium-1035.xml\n", "Fixed ./annotation/plasmodium-1705.xml\n", "Fixed ./annotation/plasmodium-0404.xml\n", "Fixed ./annotation/plasmodium-1883.xml\n", "Fixed ./annotation/plasmodium-1065.xml\n", "Fixed ./annotation/plasmodium-1708.xml\n", "Fixed ./annotation/plasmodium-0265.xml\n", "Fixed ./annotation/plasmodium-0491.xml\n", "Fixed ./annotation/plasmodium-0382.xml\n", "Fixed ./annotation/plasmodium-1996.xml\n", "Fixed ./annotation/plasmodium-1486.xml\n", "Fixed ./annotation/plasmodium-2084.xml\n", "Fixed ./annotation/plasmodium-1302.xml\n", "Fixed ./annotation/plasmodium-1572.xml\n", "Fixed ./annotation/plasmodium-1609.xml\n", "Fixed ./annotation/plasmodium-0676.xml\n", "Fixed ./annotation/plasmodium-1140.xml\n", "Fixed ./annotation/plasmodium-1931.xml\n", "Fixed ./annotation/plasmodium-1240.xml\n", "Fixed ./annotation/plasmodium-0540.xml\n", "Fixed ./annotation/plasmodium-0963.xml\n", "Fixed ./annotation/plasmodium-0630.xml\n", "Fixed ./annotation/plasmodium-1004.xml\n", "Fixed ./annotation/plasmodium-1104.xml\n", "Fixed ./annotation/plasmodium-0796.xml\n", "Fixed ./annotation/plasmodium-1933.xml\n", "Fixed ./annotation/plasmodium-0129.xml\n", "Fixed ./annotation/plasmodium-2579.xml\n", "Fixed ./annotation/plasmodium-1805.xml\n", "Fixed ./annotation/plasmodium-0478.xml\n", "Fixed ./annotation/plasmodium-2694.xml\n", "Fixed ./annotation/plasmodium-0329.xml\n", "Fixed ./annotation/plasmodium-2674.xml\n", "Fixed ./annotation/plasmodium-0037.xml\n", "Fixed ./annotation/plasmodium-1350.xml\n", "Fixed ./annotation/plasmodium-0594.xml\n", "Fixed ./annotation/plasmodium-0369.xml\n", "Fixed ./annotation/plasmodium-2475.xml\n", "Fixed ./annotation/plasmodium-2448.xml\n", "Fixed ./annotation/plasmodium-0665.xml\n", "Fixed ./annotation/plasmodium-0854.xml\n", "Fixed ./annotation/plasmodium-0014.xml\n", "Fixed ./annotation/plasmodium-1110.xml\n", "Fixed ./annotation/plasmodium-1764.xml\n", "Fixed ./annotation/plasmodium-2227.xml\n", "Fixed ./annotation/plasmodium-2464.xml\n", "Fixed ./annotation/plasmodium-0890.xml\n", "Fixed ./annotation/plasmodium-1180.xml\n", "Fixed ./annotation/plasmodium-1495.xml\n", "Fixed ./annotation/plasmodium-1513.xml\n", "Fixed ./annotation/plasmodium-1492.xml\n", "Fixed ./annotation/plasmodium-0359.xml\n", "Fixed ./annotation/plasmodium-0802.xml\n", "Fixed ./annotation/plasmodium-2397.xml\n", "Fixed ./annotation/plasmodium-2423.xml\n", "Fixed ./annotation/plasmodium-1168.xml\n", "Fixed ./annotation/plasmodium-0805.xml\n", "Fixed ./annotation/plasmodium-0070.xml\n", "Fixed ./annotation/plasmodium-1451.xml\n", "Fixed ./annotation/plasmodium-0428.xml\n", "Fixed ./annotation/plasmodium-1403.xml\n", "Fixed ./annotation/plasmodium-1649.xml\n", "Fixed ./annotation/plasmodium-2177.xml\n", "Fixed ./annotation/plasmodium-0795.xml\n", "Fixed ./annotation/plasmodium-1164.xml\n", "Fixed ./annotation/plasmodium-2554.xml\n", "Fixed ./annotation/plasmodium-2072.xml\n", "Fixed ./annotation/plasmodium-1813.xml\n", "Fixed ./annotation/plasmodium-2586.xml\n", "Fixed ./annotation/plasmodium-1016.xml\n", "Fixed ./annotation/plasmodium-1748.xml\n", "Fixed ./annotation/plasmodium-0988.xml\n", "Fixed ./annotation/plasmodium-1869.xml\n", "Fixed ./annotation/plasmodium-0553.xml\n", "Fixed ./annotation/plasmodium-0582.xml\n", "Fixed ./annotation/plasmodium-0711.xml\n", "Fixed ./annotation/plasmodium-2344.xml\n", "Fixed ./annotation/plasmodium-2121.xml\n", "Fixed ./annotation/plasmodium-2618.xml\n", "Fixed ./annotation/plasmodium-0201.xml\n", "Fixed ./annotation/plasmodium-1490.xml\n", "Fixed ./annotation/plasmodium-0073.xml\n", "Fixed ./annotation/plasmodium-2495.xml\n", "Fixed ./annotation/plasmodium-0215.xml\n", "Fixed ./annotation/plasmodium-1746.xml\n", "Fixed ./annotation/plasmodium-1839.xml\n", "Fixed ./annotation/plasmodium-1287.xml\n", "Fixed ./annotation/plasmodium-1519.xml\n", "Fixed ./annotation/plasmodium-2689.xml\n", "Fixed ./annotation/plasmodium-0174.xml\n", "Fixed ./annotation/plasmodium-0629.xml\n", "Fixed ./annotation/plasmodium-1895.xml\n", "Fixed ./annotation/plasmodium-2093.xml\n", "Fixed ./annotation/plasmodium-1553.xml\n", "Fixed ./annotation/plasmodium-2604.xml\n", "Fixed ./annotation/plasmodium-1317.xml\n", "Fixed ./annotation/plasmodium-1313.xml\n", "Fixed ./annotation/plasmodium-2309.xml\n", "Fixed ./annotation/plasmodium-0806.xml\n", "Fixed ./annotation/plasmodium-2665.xml\n", "Fixed ./annotation/plasmodium-0067.xml\n", "Fixed ./annotation/plasmodium-1229.xml\n", "Fixed ./annotation/plasmodium-2626.xml\n", "Fixed ./annotation/plasmodium-0416.xml\n", "Fixed ./annotation/plasmodium-1725.xml\n", "Fixed ./annotation/plasmodium-2021.xml\n", "Fixed ./annotation/plasmodium-2017.xml\n", "Fixed ./annotation/plasmodium-2346.xml\n", "Fixed ./annotation/plasmodium-0031.xml\n", "Fixed ./annotation/plasmodium-1699.xml\n", "Fixed ./annotation/plasmodium-0271.xml\n", "Fixed ./annotation/plasmodium-0797.xml\n", "Fixed ./annotation/plasmodium-0650.xml\n", "Fixed ./annotation/plasmodium-2698.xml\n", "Fixed ./annotation/plasmodium-2189.xml\n", "Fixed ./annotation/plasmodium-1449.xml\n", "Fixed ./annotation/plasmodium-0877.xml\n", "Fixed ./annotation/plasmodium-2612.xml\n", "Fixed ./annotation/plasmodium-1866.xml\n", "Fixed ./annotation/plasmodium-0403.xml\n", "Fixed ./annotation/plasmodium-1082.xml\n", "Fixed ./annotation/plasmodium-2071.xml\n", "Fixed ./annotation/plasmodium-1736.xml\n", "Fixed ./annotation/plasmodium-0332.xml\n", "Fixed ./annotation/plasmodium-2214.xml\n", "Fixed ./annotation/plasmodium-2522.xml\n", "Fixed ./annotation/plasmodium-1195.xml\n", "Fixed ./annotation/plasmodium-1169.xml\n", "Fixed ./annotation/plasmodium-0739.xml\n", "Fixed ./annotation/plasmodium-2060.xml\n", "Fixed ./annotation/plasmodium-0139.xml\n", "Fixed ./annotation/plasmodium-1851.xml\n", "Fixed ./annotation/plasmodium-1696.xml\n", "Fixed ./annotation/plasmodium-0633.xml\n", "Fixed ./annotation/plasmodium-2129.xml\n", "Fixed ./annotation/plasmodium-1338.xml\n", "Fixed ./annotation/plasmodium-1236.xml\n", "Fixed ./annotation/plasmodium-1358.xml\n", "Fixed ./annotation/plasmodium-1014.xml\n", "Fixed ./annotation/plasmodium-0430.xml\n", "Fixed ./annotation/plasmodium-1758.xml\n", "Fixed ./annotation/plasmodium-1334.xml\n" ], "name": "stdout" } ] }, { "cell_type": "markdown", "metadata": { "id": "2u872ZKKeZ8h", "colab_type": "text" }, "source": [ "### 5) Download pregenerated csv file\n", "\n", "The annotations.csv file was created using RectLabel" ] }, { "cell_type": "code", "metadata": { "id": "EpFSdUGALaop", "colab_type": "code", "outputId": "92726632-bae5-41e5-873d-397a9e47a4cc", "colab": { "base_uri": "https://localhost:8080/", "height": 235 } }, "source": [ "!wget https://gist.githubusercontent.com/navanchauhan/dd91c089c743217868a00d68c9b7d3fe/raw/1b61cbc39d8a7406f2fbb2d687d34820aa063054/annotations.csv" ], "execution_count": 0, "outputs": [ { "output_type": "stream", "text": [ "--2019-11-05 00:45:49-- https://gist.githubusercontent.com/navanchauhan/dd91c089c743217868a00d68c9b7d3fe/raw/1b61cbc39d8a7406f2fbb2d687d34820aa063054/annotations.csv\n", "Resolving gist.githubusercontent.com (gist.githubusercontent.com)... 151.101.0.133, 151.101.64.133, 151.101.128.133, ...\n", "Connecting to gist.githubusercontent.com (gist.githubusercontent.com)|151.101.0.133|:443... connected.\n", "HTTP request sent, awaiting response... 200 OK\n", "Length: 5091493 (4.9M) [text/plain]\n", "Saving to: ‘annotations.csv’\n", "\n", "\rannotations.csv 0%[ ] 0 --.-KB/s \rannotations.csv 100%[===================>] 4.86M --.-KB/s in 0.04s \n", "\n", "2019-11-05 00:45:49 (137 MB/s) - ‘annotations.csv’ saved [5091493/5091493]\n", "\n" ], "name": "stdout" } ] }, { "cell_type": "markdown", "metadata": { "id": "Qem0xslven3Y", "colab_type": "text" }, "source": [ "### 6) Change Absolute Path to Relative Path" ] }, { "cell_type": "code", "metadata": { "id": "TWPJ8zVsMoEP", "colab_type": "code", "colab": {} }, "source": [ "def replaceIt(filename, old, new):\n", "\tf = open(filename,'r')\n", "\tfiledata = f.read()\n", "\tf.close()\n", "\tnewdata = filedata.replace(old,new)\n", "\tf = open(filename,'w')\n", "\tf.write(newdata)\n", "\tf.close()\n", "\n", "replaceIt(\"./annotations.csv\",\"/Users/navanchauhan/Downloads/malaria-data-object/plasmodium-images/images\",\"./images\")\n" ], "execution_count": 0, "outputs": [] }, { "cell_type": "markdown", "metadata": { "id": "7bfuY1ISeuFN", "colab_type": "text" }, "source": [ "### 7) Train Model" ] }, { "cell_type": "code", "metadata": { "id": "RLSloYzNMrQG", "colab_type": "code", "outputId": "2c0b2088-8da7-43a3-c01e-3f7b856f7f62", "colab": { "base_uri": "https://localhost:8080/", "height": 1000 } }, "source": [ "import turicreate as tc\n", "import sys\n", "import os\n", "\n", "tc.config.set_num_gpus(-1)\n", "\n", "csv_file = './annotations.csv'\n", "csv = tc.SFrame(csv_file)\n", "\n", "image_path = csv['path'][0]\n", "image_folder = str(os.path.split(image_path)[0])\n", "\n", "data = tc.image_analysis.load_images(image_folder, recursive=False)\n", "data = data.join(csv)\n", "\n", "train, val = data.random_split(0.8)\n", "\n", "model = tc.object_detector.create(train, max_iterations=10000)\n", "\n", "\n", "model.save('plasmodium.model')\n", "model.export_coreml('plasmodium.mlmodel')\n", "\n", "scores = model.evaluate(val)\n", "print(scores)\n" ], "execution_count": 0, "outputs": [ { "output_type": "display_data", "data": { "text/html": [ "
Finished parsing file /content/annotations.csv
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" ], "text/plain": [ "Parsing completed. Parsed 100 lines in 0.24289 secs." ] }, "metadata": { "tags": [] } }, { "output_type": "stream", "text": [ "------------------------------------------------------\n", "Inferred types from first 100 line(s) of file as \n", "column_type_hints=[str,list]\n", "If parsing fails due to incorrect types, you can correct\n", "the inferred type list above and pass it to read_csv in\n", "the column_type_hints argument\n", "------------------------------------------------------\n" ], "name": "stdout" }, { "output_type": "display_data", "data": { "text/html": [ "
Finished parsing file /content/annotations.csv
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Parsed 2703 lines in 0.24236 secs." ] }, "metadata": { "tags": [] } }, { "output_type": "stream", "text": [ "WARNING: You are using MXNet 1.4.0 which may result in breaking behavior.\n", " To fix this, please install the currently recommended version:\n", "\n", " pip uninstall -y mxnet && pip install mxnet==1.1.0\n", "\n", " If you want to use a CUDA GPU, then change 'mxnet' to 'mxnet-cu90' (adjust 'cu90' depending on your CUDA version):\n", "\n", "Using 'image' as feature column\n", "Using 'annotations' as annotations column\n", "Downloading https://docs-assets.developer.apple.com/turicreate/models/darknet.params\n", "Download completed: /var/tmp/model_cache/darknet.params\n", "Setting 'batch_size' to 32\n", "Using GPU to create model (Tesla P100-PCIE-16GB)\n", "+--------------+--------------+--------------+\n", "| Iteration | Loss | Elapsed Time |\n", "+--------------+--------------+--------------+\n", "| 1 | 11.321 | 14.5 |\n", "| 6 | 11.964 | 26.9 |\n", "| 11 | 11.867 | 39.4 |\n", "| 15 | 11.222 | 49.7 |\n", "| 19 | 11.003 | 60.2 |\n", "| 23 | 10.262 | 70.4 |\n", "| 28 | 9.847 | 82.6 |\n", "| 32 | 9.412 | 92.8 |\n", "| 37 | 8.674 | 104.9 |\n", "| 42 | 8.017 | 117.1 |\n", "| 47 | 7.422 | 129.5 |\n", "| 51 | 7.114 | 139.6 |\n", "| 56 | 6.843 | 152.0 |\n", "| 61 | 6.808 | 164.1 |\n", "| 65 | 6.436 | 174.2 |\n", "| 69 | 6.504 | 184.8 |\n", "| 74 | 6.282 | 197.0 |\n", "| 79 | 6.067 | 209.3 |\n", "| 83 | 5.963 | 219.5 |\n", "| 88 | 6.025 | 231.9 |\n", "| 93 | 6.185 | 244.0 |\n", "| 98 | 6.007 | 256.5 |\n", "| 103 | 5.922 | 268.7 |\n", "| 108 | 5.832 | 281.1 |\n", "| 113 | 5.542 | 293.2 |\n", "| 117 | 5.619 | 303.2 |\n", "| 122 | 5.946 | 315.3 |\n", "| 127 | 5.938 | 327.5 |\n", "| 132 | 5.881 | 339.9 |\n", "| 137 | 5.716 | 352.7 |\n", "| 141 | 5.286 | 362.8 |\n", "| 146 | 5.581 | 374.8 |\n", "| 151 | 5.496 | 387.2 |\n", "| 156 | 5.624 | 399.5 |\n", "| 161 | 5.667 | 411.6 |\n", "| 166 | 5.578 | 423.8 |\n", "| 171 | 5.675 | 436.3 |\n", "| 176 | 5.682 | 448.3 |\n", "| 181 | 5.621 | 460.4 |\n", "| 186 | 5.520 | 472.6 |\n", "| 191 | 5.539 | 484.8 |\n", "| 195 | 5.635 | 494.9 |\n", "| 200 | 5.518 | 507.1 |\n", "| 205 | 5.383 | 519.9 |\n", "| 210 | 5.394 | 532.2 |\n", "| 214 | 5.661 | 542.3 |\n", "| 218 | 5.843 | 552.3 |\n", "| 223 | 5.539 | 564.4 |\n", "| 228 | 5.513 | 576.7 |\n", "| 233 | 5.377 | 589.1 |\n", "| 238 | 5.409 | 601.4 |\n", "| 243 | 5.086 | 613.5 |\n", "| 248 | 5.315 | 625.8 |\n", "| 253 | 5.525 | 638.0 |\n", "| 258 | 5.241 | 650.1 |\n", "| 263 | 5.364 | 662.2 |\n", "| 268 | 5.414 | 674.1 |\n", "| 273 | 5.359 | 686.5 |\n", "| 278 | 5.366 | 698.6 |\n", "| 283 | 5.019 | 710.8 |\n", "| 288 | 5.301 | 722.9 |\n", "| 293 | 5.207 | 734.8 |\n", "| 298 | 4.881 | 746.9 |\n", "| 303 | 5.331 | 759.2 |\n", "| 308 | 5.575 | 771.5 |\n", "| 313 | 5.477 | 783.7 |\n", "| 318 | 5.481 | 796.0 |\n", "| 323 | 5.288 | 807.9 |\n", "| 328 | 5.290 | 820.0 |\n", "| 333 | 5.211 | 832.2 |\n", "| 338 | 5.416 | 844.3 |\n", "| 342 | 5.432 | 854.7 |\n", "| 347 | 5.150 | 866.8 |\n", "| 352 | 5.276 | 878.9 |\n", "| 357 | 5.267 | 891.2 |\n", "| 362 | 5.101 | 903.6 |\n", "| 367 | 5.168 | 915.6 |\n", "| 371 | 5.182 | 925.9 |\n", "| 376 | 5.069 | 938.0 |\n", "| 381 | 5.345 | 950.2 |\n", "| 386 | 5.367 | 962.1 |\n", "| 391 | 4.857 | 974.4 |\n", "| 396 | 5.069 | 986.6 |\n", "| 401 | 5.216 | 999.0 |\n", "| 406 | 5.087 | 1011.3 |\n", "| 410 | 5.050 | 1021.9 |\n", "| 415 | 5.280 | 1034.1 |\n", "| 420 | 5.347 | 1046.4 |\n", "| 424 | 5.162 | 1056.5 |\n", "| 429 | 5.069 | 1068.5 |\n", "| 434 | 4.889 | 1080.8 |\n", "| 439 | 5.035 | 1092.9 |\n", "| 444 | 5.011 | 1105.3 |\n", "| 448 | 4.905 | 1115.4 |\n", "| 453 | 5.238 | 1127.6 |\n", "| 458 | 5.259 | 1139.8 |\n", "| 462 | 5.240 | 1149.9 |\n", "| 467 | 5.046 | 1161.8 |\n", "| 472 | 5.191 | 1174.0 |\n", "| 477 | 5.103 | 1186.2 |\n", "| 481 | 4.822 | 1196.3 |\n", "| 486 | 5.067 | 1208.3 |\n", "| 490 | 5.055 | 1218.4 |\n", "| 495 | 5.016 | 1230.5 |\n", "| 500 | 5.178 | 1242.7 |\n", "| 505 | 5.261 | 1254.7 |\n", "| 510 | 5.027 | 1267.0 |\n", "| 515 | 5.014 | 1279.1 |\n", "| 520 | 4.766 | 1291.4 |\n", "| 525 | 4.762 | 1303.5 |\n", "| 529 | 4.912 | 1313.6 |\n", "| 534 | 5.349 | 1325.6 |\n", "| 539 | 5.245 | 1338.0 |\n", "| 544 | 5.019 | 1350.1 |\n", "| 548 | 4.808 | 1360.7 |\n", "| 553 | 4.693 | 1372.8 |\n", "| 558 | 4.756 | 1384.9 |\n", "| 563 | 4.790 | 1397.0 |\n", "| 568 | 4.923 | 1409.3 |\n", "| 573 | 5.030 | 1421.5 |\n", "| 578 | 5.034 | 1433.8 |\n", "| 583 | 5.111 | 1445.8 |\n", "| 588 | 4.899 | 1458.1 |\n", "| 593 | 5.177 | 1470.3 |\n", "| 598 | 5.081 | 1482.5 |\n", "| 603 | 4.922 | 1494.8 |\n", "| 607 | 5.204 | 1504.8 |\n", "| 611 | 5.070 | 1514.9 |\n", "| 615 | 4.923 | 1525.2 |\n", "| 620 | 4.796 | 1536.9 |\n", "| 625 | 5.003 | 1549.1 |\n", "| 630 | 4.980 | 1561.3 |\n", "| 635 | 5.279 | 1573.6 |\n", "| 640 | 5.200 | 1585.8 |\n", "| 645 | 5.158 | 1598.0 |\n", "| 650 | 5.233 | 1610.1 |\n", "| 654 | 5.037 | 1620.3 |\n", "| 659 | 5.218 | 1632.6 |\n", "| 664 | 5.001 | 1644.8 |\n", "| 669 | 4.818 | 1657.0 |\n", "| 673 | 4.809 | 1667.1 |\n", "| 678 | 4.772 | 1679.4 |\n", "| 683 | 4.500 | 1691.8 |\n", "| 688 | 4.648 | 1703.9 |\n", "| 693 | 4.749 | 1716.2 |\n", "| 698 | 4.911 | 1728.0 |\n", "| 703 | 4.874 | 1740.1 |\n", "| 708 | 5.062 | 1752.2 |\n", "| 713 | 4.879 | 1764.5 |\n", "| 718 | 4.925 | 1776.5 |\n", "| 722 | 4.643 | 1786.6 |\n", "| 727 | 4.587 | 1798.6 |\n", "| 732 | 4.445 | 1811.0 |\n", "| 737 | 4.766 | 1823.4 |\n", "| 742 | 5.220 | 1835.7 |\n", "| 747 | 5.237 | 1847.8 |\n", "| 751 | 5.133 | 1857.8 |\n", "| 756 | 5.017 | 1870.1 |\n", "| 761 | 4.931 | 1882.4 |\n", "| 766 | 4.942 | 1894.7 |\n", "| 771 | 4.786 | 1906.9 |\n", "| 776 | 4.912 | 1918.9 |\n", "| 781 | 4.803 | 1931.2 |\n", "| 786 | 4.612 | 1943.2 |\n", "| 791 | 4.755 | 1955.5 |\n", "| 796 | 4.678 | 1967.5 |\n", "| 801 | 4.834 | 1979.5 |\n", "| 806 | 4.875 | 1991.8 |\n", "| 811 | 4.904 | 2003.8 |\n", "| 816 | 4.807 | 2015.8 |\n", "| 820 | 4.649 | 2026.1 |\n", "| 825 | 4.935 | 2038.6 |\n", "| 830 | 4.691 | 2050.5 |\n", "| 835 | 4.697 | 2062.9 |\n", "| 840 | 4.892 | 2075.2 |\n", "| 845 | 4.974 | 2087.3 |\n", "| 850 | 4.884 | 2099.6 |\n", "| 855 | 4.801 | 2111.4 |\n", "| 860 | 4.678 | 2123.6 |\n", "| 865 | 4.883 | 2135.4 |\n", "| 870 | 4.709 | 2147.7 |\n", "| 875 | 4.780 | 2159.9 |\n", "| 880 | 4.737 | 2172.2 |\n", "| 885 | 4.724 | 2184.6 |\n", "| 889 | 4.744 | 2194.9 |\n", "| 894 | 4.909 | 2206.7 |\n", "| 899 | 4.993 | 2218.9 |\n", "| 904 | 4.972 | 2231.0 |\n", "| 909 | 4.614 | 2242.8 |\n", "| 914 | 4.739 | 2254.9 |\n", "| 919 | 4.720 | 2267.0 |\n", "| 924 | 4.630 | 2279.0 |\n", "| 928 | 4.713 | 2289.0 |\n", "| 933 | 4.643 | 2300.8 |\n", "| 937 | 4.903 | 2310.8 |\n", "| 942 | 4.635 | 2322.9 |\n", "| 947 | 5.138 | 2335.0 |\n", "| 952 | 4.815 | 2347.0 |\n", "| 956 | 4.762 | 2357.3 |\n", "| 960 | 4.958 | 2367.3 |\n", "| 965 | 4.756 | 2379.4 |\n", "| 969 | 4.838 | 2389.5 |\n", "| 974 | 4.943 | 2401.5 |\n", "| 979 | 4.934 | 2413.9 |\n", "| 983 | 4.818 | 2423.9 |\n", "| 988 | 5.022 | 2436.0 |\n", "| 993 | 4.716 | 2448.1 |\n", "| 998 | 4.665 | 2460.1 |\n", "| 1002 | 4.661 | 2470.1 |\n", "| 1007 | 4.538 | 2482.3 |\n", "| 1012 | 4.757 | 2494.2 |\n", "| 1017 | 4.946 | 2506.1 |\n", "| 1022 | 5.060 | 2518.4 |\n", "| 1026 | 4.975 | 2528.7 |\n", "| 1031 | 4.871 | 2540.5 |\n", "| 1035 | 5.013 | 2550.5 |\n", "| 1040 | 4.897 | 2562.8 |\n", "| 1044 | 4.760 | 2572.8 |\n", "| 1049 | 4.754 | 2584.9 |\n", "| 1054 | 4.918 | 2597.1 |\n", "| 1059 | 4.900 | 2609.2 |\n", "| 1064 | 5.072 | 2621.3 |\n", "| 1068 | 4.952 | 2631.4 |\n", "| 1072 | 4.926 | 2641.4 |\n", "| 1077 | 4.511 | 2653.6 |\n", "| 1082 | 4.663 | 2665.6 |\n", "| 1087 | 4.735 | 2677.8 |\n", "| 1092 | 4.630 | 2690.1 |\n", "| 1097 | 4.851 | 2702.4 |\n", "| 1102 | 4.832 | 2714.8 |\n", "| 1107 | 4.656 | 2726.6 |\n", "| 1112 | 4.582 | 2739.2 |\n", "| 1117 | 4.452 | 2751.6 |\n", "| 1121 | 4.568 | 2761.6 |\n", "| 1126 | 4.520 | 2773.9 |\n", "| 1131 | 4.515 | 2786.1 |\n", "| 1136 | 4.426 | 2798.0 |\n", "| 1141 | 4.651 | 2810.2 |\n", "| 1146 | 4.853 | 2822.0 |\n", "| 1151 | 4.807 | 2834.2 |\n", "| 1156 | 4.840 | 2846.4 |\n", "| 1160 | 4.956 | 2856.7 |\n", "| 1165 | 4.866 | 2868.9 |\n", "| 1170 | 4.729 | 2881.4 |\n", "| 1175 | 4.589 | 2893.5 |\n", "| 1180 | 4.726 | 2905.7 |\n", "| 1185 | 4.637 | 2917.5 |\n", "| 1190 | 4.751 | 2929.6 |\n", "| 1195 | 4.707 | 2941.6 |\n", "| 1200 | 4.894 | 2954.1 |\n", "| 1205 | 4.926 | 2966.5 |\n", "| 1210 | 4.880 | 2978.7 |\n", "| 1215 | 4.857 | 2990.8 |\n", "| 1220 | 4.917 | 3003.0 |\n", "| 1225 | 4.593 | 3014.9 |\n", "| 1229 | 4.788 | 3025.2 |\n", "| 1234 | 4.897 | 3037.4 |\n", "| 1239 | 4.940 | 3049.7 |\n", "| 1244 | 4.822 | 3061.8 |\n", "| 1249 | 4.610 | 3074.1 |\n", "| 1254 | 4.669 | 3086.4 |\n", "| 1259 | 4.834 | 3098.7 |\n", "| 1264 | 4.753 | 3110.8 |\n", "| 1268 | 4.724 | 3120.9 |\n", "| 1273 | 4.989 | 3132.9 |\n", "| 1278 | 4.754 | 3145.1 |\n", "| 1283 | 4.451 | 3157.0 |\n", "| 1288 | 4.617 | 3169.1 |\n", "| 1293 | 4.431 | 3181.1 |\n", "| 1297 | 4.393 | 3191.4 |\n", "| 1302 | 4.542 | 3203.8 |\n", "| 1307 | 4.581 | 3215.9 |\n", "| 1312 | 4.599 | 3228.0 |\n", "| 1317 | 4.912 | 3240.0 |\n", "| 1322 | 4.569 | 3252.1 |\n", "| 1327 | 4.539 | 3264.2 |\n", "| 1332 | 4.609 | 3276.2 |\n", "| 1337 | 4.573 | 3288.3 |\n", "| 1342 | 4.695 | 3300.0 |\n", "| 1347 | 4.993 | 3312.2 |\n", "| 1351 | 4.789 | 3322.4 |\n", "| 1356 | 4.552 | 3334.5 |\n", "| 1361 | 4.445 | 3346.8 |\n", "| 1365 | 4.303 | 3357.0 |\n", "| 1370 | 4.837 | 3369.2 |\n", "| 1374 | 4.752 | 3379.2 |\n", "| 1378 | 4.631 | 3389.3 |\n", "| 1383 | 4.732 | 3401.5 |\n", "| 1388 | 4.764 | 3413.7 |\n", "| 1393 | 4.848 | 3425.7 |\n", "| 1398 | 4.764 | 3437.9 |\n", "| 1403 | 4.706 | 3449.9 |\n", "| 1408 | 4.625 | 3462.0 |\n", "| 1413 | 4.633 | 3473.8 |\n", "| 1418 | 4.642 | 3485.7 |\n", "| 1423 | 4.807 | 3497.6 |\n", "| 1428 | 4.748 | 3509.7 |\n", "| 1433 | 4.634 | 3522.4 |\n", "| 1438 | 4.506 | 3534.3 |\n", "| 1443 | 4.458 | 3546.5 |\n", "| 1448 | 4.467 | 3558.6 |\n", "| 1453 | 4.534 | 3570.8 |\n", "| 1458 | 4.512 | 3583.1 |\n", "| 1463 | 4.847 | 3595.3 |\n", "| 1468 | 4.934 | 3607.2 |\n", "| 1473 | 4.617 | 3619.3 |\n", "| 1478 | 4.558 | 3631.4 |\n", "| 1483 | 4.370 | 3643.3 |\n", "| 1488 | 4.513 | 3655.6 |\n", "| 1493 | 4.741 | 3667.8 |\n", "| 1498 | 4.770 | 3679.8 |\n", "| 1502 | 4.922 | 3690.2 |\n", "| 1507 | 4.840 | 3702.2 |\n", "| 1512 | 4.630 | 3714.6 |\n", "| 1517 | 4.745 | 3726.4 |\n", "| 1522 | 4.882 | 3738.8 |\n", "| 1527 | 4.777 | 3750.8 |\n", "| 1532 | 4.806 | 3763.1 |\n", "| 1537 | 4.762 | 3775.2 |\n", "| 1542 | 4.943 | 3787.3 |\n", "| 1547 | 4.868 | 3799.2 |\n", "| 1552 | 4.714 | 3811.4 |\n", "| 1557 | 4.779 | 3823.6 |\n", "| 1562 | 4.724 | 3835.6 |\n", "| 1567 | 4.729 | 3847.7 |\n", "| 1571 | 4.696 | 3857.8 |\n", "| 1576 | 4.756 | 3869.7 |\n", "| 1581 | 4.466 | 3881.7 |\n", "| 1586 | 4.553 | 3893.8 |\n", "| 1591 | 4.893 | 3906.0 |\n", "| 1595 | 4.924 | 3916.1 |\n", "| 1600 | 4.813 | 3928.3 |\n", "| 1605 | 4.638 | 3940.5 |\n", "| 1609 | 4.594 | 3950.5 |\n", "| 1614 | 4.558 | 3962.5 |\n", "| 1619 | 4.752 | 3974.9 |\n", "| 1624 | 4.715 | 3987.2 |\n", "| 1628 | 4.813 | 3997.3 |\n", "| 1633 | 4.696 | 4009.6 |\n", "| 1638 | 4.782 | 4022.5 |\n", "| 1643 | 4.556 | 4034.5 |\n", "| 1648 | 4.567 | 4046.9 |\n", "| 1653 | 4.696 | 4059.1 |\n" ], "name": "stdout" } ] }, { "cell_type": "markdown", "metadata": { "id": "_FV4qUCDfr77", "colab_type": "text" }, "source": [ "### 8) Exporting Model for Conversion\n", "\n", "ONNX currently does not support non maximum suppression " ] }, { "cell_type": "code", "metadata": { "id": "Prxsg2pdQ0AT", "colab_type": "code", "colab": {} }, "source": [ "model.export_coreml('plasmodium-for-onnx.mlmodel', include_non_maximum_suppression=False)" ], "execution_count": 0, "outputs": [] }, { "cell_type": "markdown", "metadata": { "id": "VTNCsGwegDeP", "colab_type": "text" }, "source": [ "### 9) Save to Google Drive\n" ] }, { "cell_type": "code", "metadata": { "id": "M3zccxx6fVt4", "colab_type": "code", "colab": {} }, "source": [ "!cp \"./plasmodium-for-onnx.mlmodel\" \"/content/gdrive/My Drive/.\"" ], "execution_count": 0, "outputs": [] }, { "cell_type": "markdown", "metadata": { "id": "dCy_Y5ZLh3O2", "colab_type": "text" }, "source": [ "### 10) Installing ONNX and converting model" ] }, { "cell_type": "code", "metadata": { "id": "I9gf1C11yo93", "colab_type": "code", "outputId": "5c562a2d-c920-4fed-a04a-31c24705654c", "colab": { "base_uri": "https://localhost:8080/", "height": 415 } }, "source": [ "!pip install onnx coremltools onnxmltools" ], "execution_count": 0, "outputs": [ { "output_type": "stream", "text": [ "Requirement already satisfied: onnx in /usr/local/lib/python3.6/dist-packages (1.6.0)\n", "Requirement already satisfied: coremltools in /usr/local/lib/python3.6/dist-packages (3.0b3)\n", "Requirement already satisfied: onnxmltools in /usr/local/lib/python3.6/dist-packages (1.5.1)\n", "Requirement already satisfied: typing-extensions>=3.6.2.1 in /usr/local/lib/python3.6/dist-packages (from onnx) (3.6.6)\n", "Requirement already satisfied: numpy in /usr/local/lib/python3.6/dist-packages (from onnx) (1.14.6)\n", "Requirement already satisfied: six in /usr/local/lib/python3.6/dist-packages (from onnx) (1.12.0)\n", "Requirement already satisfied: protobuf in /usr/local/lib/python3.6/dist-packages (from onnx) (3.10.0)\n", "Requirement already satisfied: keras2onnx in /usr/local/lib/python3.6/dist-packages (from onnxmltools) (1.6.0)\n", "Requirement already satisfied: skl2onnx in /usr/local/lib/python3.6/dist-packages (from onnxmltools) (1.5.2)\n", "Requirement already satisfied: onnxconverter-common>=1.5.0 in /usr/local/lib/python3.6/dist-packages (from onnxmltools) (1.6.0)\n", "Requirement already satisfied: setuptools in /usr/local/lib/python3.6/dist-packages (from protobuf->onnx) (41.4.0)\n", "Requirement already satisfied: fire in /usr/local/lib/python3.6/dist-packages (from keras2onnx->onnxmltools) (0.2.1)\n", "Requirement already satisfied: requests in /usr/local/lib/python3.6/dist-packages (from keras2onnx->onnxmltools) (2.21.0)\n", "Requirement already satisfied: scikit-learn>=0.19 in /usr/local/lib/python3.6/dist-packages (from skl2onnx->onnxmltools) (0.21.3)\n", "Requirement already satisfied: termcolor in /usr/local/lib/python3.6/dist-packages (from fire->keras2onnx->onnxmltools) (1.1.0)\n", "Requirement already satisfied: certifi>=2017.4.17 in /usr/local/lib/python3.6/dist-packages (from requests->keras2onnx->onnxmltools) (2019.9.11)\n", "Requirement already satisfied: chardet<3.1.0,>=3.0.2 in /usr/local/lib/python3.6/dist-packages (from requests->keras2onnx->onnxmltools) (3.0.4)\n", "Requirement already satisfied: idna<2.9,>=2.5 in /usr/local/lib/python3.6/dist-packages (from requests->keras2onnx->onnxmltools) (2.8)\n", "Requirement already satisfied: urllib3<1.25,>=1.21.1 in /usr/local/lib/python3.6/dist-packages (from requests->keras2onnx->onnxmltools) (1.24.3)\n", "Requirement already satisfied: joblib>=0.11 in /usr/local/lib/python3.6/dist-packages (from scikit-learn>=0.19->skl2onnx->onnxmltools) (0.14.0)\n", "Requirement already satisfied: scipy>=0.17.0 in /usr/local/lib/python3.6/dist-packages (from scikit-learn>=0.19->skl2onnx->onnxmltools) (1.3.1)\n" ], "name": "stdout" } ] }, { "cell_type": "code", "metadata": { "id": "HfqmoxaJ1sau", "colab_type": "code", "outputId": "98e95191-d67c-4f3b-fcd0-fa0f1f374fba", "colab": { "base_uri": "https://localhost:8080/", "height": 171 } }, "source": [ "import onnxmltools\n", "import coremltools" ], "execution_count": 0, "outputs": [ { "output_type": "display_data", "data": { "text/html": [ "

\n", "The default version of TensorFlow in Colab will soon switch to TensorFlow 2.x.
\n", "We recommend you upgrade now \n", "or ensure your notebook will continue to use TensorFlow 1.x via the %tensorflow_version 1.x magic:\n", "more info.

\n" ], "text/plain": [ "" ] }, "metadata": { "tags": [] } }, { "output_type": "stream", "text": [ "WARNING:root:TensorFlow version 1.15.0 detected. Last version known to be fully compatible is 1.13.1 .\n", "WARNING:root:Keras version 2.2.5 detected. Last version known to be fully compatible of Keras is 2.2.4 .\n" ], "name": "stderr" } ] }, { "cell_type": "code", "metadata": { "id": "rKX4J5Ig17w8", "colab_type": "code", "colab": {} }, "source": [ "input_coreml_model = 'plasmodium-for-onnx.mlmodel'\n", "output_onnx_model = 'model.onnx'" ], "execution_count": 0, "outputs": [] }, { "cell_type": "code", "metadata": { "id": "oOAjubc92BHt", "colab_type": "code", "colab": {} }, "source": [ "coreml_model = coremltools.utils.load_spec(input_coreml_model)\n", "onnx_model = onnxmltools.convert_coreml(coreml_model)\n", "onnxmltools.utils.save_model(onnx_model, output_onnx_model)\n", "\n", "!cp ./model.onnx \"/content/gdrive/My Drive/.\"" ], "execution_count": 0, "outputs": [] } ] }