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-rw-r--r--scripts/main_local.sh8
1 files changed, 4 insertions, 4 deletions
diff --git a/scripts/main_local.sh b/scripts/main_local.sh
index bcbcf92..56cf73a 100644
--- a/scripts/main_local.sh
+++ b/scripts/main_local.sh
@@ -139,13 +139,13 @@ fi
if [[ $visualisations == "true" ]]; then
file=$(echo "$ligandPath" | cut -f 1 -d '.')
- ./quick-ligand-protein.py -p $proteinPath -l "$(echo $file)_out.pdbqt"
+ quick-ligand-protein.py -p $proteinPath -l "$(echo $file)_out.pdbqt"
fi
if [[ $interactions == "true" ]]; then
- ./get-best.py -p $proteinPath -l "$(echo $file)_out.pdbqt"
- ./plipcmd.py -f best.pdb -qpxy
- ./makeReport.py --input . > report.md
+ get-best.py -p $proteinPath -l "$(echo $file)_out.pdbqt"
+ plip -f best.pdb -qpxy
+ makeReport.py --input . > report.md
pandoc -V geometry:margin=1in report.md --pdf-engine=xelatex -o $name.pdf
fi