""" Protein-Ligand Interaction Profiler - Analyze and visualize protein-ligand interactions in PDB files. test_command_line.py - Unit Tests for special cases. """ import os import subprocess import sys import tempfile import unittest class CommandLineTest(unittest.TestCase): """Checks special and extreme cases for input files.""" def setUp(self) -> None: self.tmp_dir = tempfile.TemporaryDirectory() def tearDown(self) -> None: self.tmp_dir.cleanup() def test_empty_input_file(self): """Input file is empty.""" exitcode = subprocess.call( f"{sys.executable} ../plipcmd.py -f ./special/empty.pdb -o {self.tmp_dir.name}", shell=True, ) self.assertEqual(exitcode, 1) def test_invalid_pdb_id(self): """A PDB ID with no valid PDB record is provided.""" exitcode = subprocess.call( f"{sys.executable} ../plipcmd.py -i xx1x -o {self.tmp_dir.name}", shell=True ) self.assertEqual(exitcode, 1) def test_invalid_input_file(self): """A file is provided which is not a PDB file.""" exitcode = subprocess.call( f"{sys.executable} ../plipcmd.py -f ./special/non-pdb.pdb -o {self.tmp_dir.name}", shell=True, ) self.assertEqual(exitcode, 1) def test_pdb_format_not_available(self): """A valid PDB ID is provided, but there is no entry in PDB format from wwPDB""" exitcode = subprocess.call( f"{sys.executable} ../plipcmd.py -i 4v59 -o {self.tmp_dir.name}", shell=True ) self.assertEqual(exitcode, 1) def test_valid_pdb(self): """A PDB ID with no valid PDB record is provided.""" exitcode = subprocess.call( f"{sys.executable} ../plipcmd.py -x -f ./pdb/1eve.pdb -o {self.tmp_dir.name}", shell=True, ) self.assertEqual(len(os.listdir(self.tmp_dir.name)), 2) self.assertEqual(exitcode, 0)