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| author | Navan Chauhan <navanchauhan@gmail.com> | 2020-06-02 23:23:56 +0530 |
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| committer | Navan Chauhan <navanchauhan@gmail.com> | 2020-06-02 23:23:56 +0530 |
| commit | 3d971c498b1b7fdc7bad8081592444bd54fa17d8 (patch) | |
| tree | d07f13bf498f2313d4c8831071d3f7d75ff0c7c4 /posts | |
| parent | 3ec7d22d1ca0c5a5bbd54a735f917aebab633928 (diff) | |
Publish deploy 2020-06-02 23:23
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| -rw-r--r-- | posts/2020-06-02-Compiling-AutoDock-Vina-on-iOS/index.html | 29 | ||||
| -rw-r--r-- | posts/index.html | 2 |
2 files changed, 30 insertions, 1 deletions
diff --git a/posts/2020-06-02-Compiling-AutoDock-Vina-on-iOS/index.html b/posts/2020-06-02-Compiling-AutoDock-Vina-on-iOS/index.html new file mode 100644 index 0000000..2265b38 --- /dev/null +++ b/posts/2020-06-02-Compiling-AutoDock-Vina-on-iOS/index.html @@ -0,0 +1,29 @@ +<!DOCTYPE html><html lang="en"><head><meta charset="UTF-8"/><meta name="og:site_name" content="Navan Chauhan"/><link rel="canonical" href="https://navanchauhan.github.io/posts/2020-06-02-Compiling-AutoDock-Vina-on-iOS"/><meta name="twitter:url" content="https://navanchauhan.github.io/posts/2020-06-02-Compiling-AutoDock-Vina-on-iOS"/><meta name="og:url" content="https://navanchauhan.github.io/posts/2020-06-02-Compiling-AutoDock-Vina-on-iOS"/><title>Compiling AutoDock Vina on iOS | Navan Chauhan</title><meta name="twitter:title" content="Compiling AutoDock Vina on iOS | Navan Chauhan"/><meta name="og:title" content="Compiling AutoDock Vina on iOS | Navan Chauhan"/><meta name="description" content="Compiling AutoDock Vina on iOS"/><meta name="twitter:description" content="Compiling AutoDock Vina on iOS"/><meta name="og:description" content="Compiling AutoDock Vina on iOS"/><meta name="twitter:card" content="summary"/><link rel="stylesheet" href="/styles.css" type="text/css"/><meta name="viewport" content="width=device-width, initial-scale=1.0"/><link rel="shortcut icon" href="/images/favicon.png" type="image/png"/><link rel="alternate" href="/feed.rss" type="application/rss+xml" title="Subscribe to Navan Chauhan"/><meta name="twitter:image" content="https://navanchauhan.github.io/images/logo.png"/><meta name="og:image" content="https://navanchauhan.github.io/images/logo.png"/></head><head><script src="https://www.googletagmanager.com/gtag/js?id=UA-108635191-1v"></script><script>window.dataLayer = window.dataLayer || [];function gtag(){dataLayer.push(arguments);}gtag('js', new Date());gtag('config', 'UA-108635191-1');</script></head><body class="item-page"><header><div class="wrapper"><a class="site-name" href="/">Navan Chauhan</a><nav><ul><li><a href="/about">About Me</a></li><li><a class="selected" href="/posts">Posts</a></li><li><a href="/publications">Publications</a></li><li><a href="/assets/résumé.pdf">Résumé</a></li><li><a href="https://navanchauhan.github.io/repo">Repo</a></li></ul></nav></div></header><div class="wrapper"><article><div class="content"><span class="reading-time">3 minute read</span><span class="reading-time">Created on June 2, 2020</span><h1>Compiling AutoDock Vina on iOS</h1><p>Why? Because I can.</p><h2>Installing makedepend</h2><p><code>makedepend</code> is a Unix tool used to generate dependencies of C source files. Most modern programes do not use this anymore, but then again AutoDock Vina's source code hasn't been changed since 2011. The first hurdle came when I saw that there was no makedepend command, neither was there any package on any development repository for iOS. So, I tracked down the original source code for <code>makedepend</code> (https://github.com/DerellLicht/makedepend). According to the repository this is actually the source code for the makedepend utility that came with some XWindows distribution back around Y2K. I am pretty sure there is a problem with my current compiler configuration because I had to manually edit the <code>Makefile</code> to provide the path to the iOS SDKs using the <code>-isysroot</code> flag.</p><h2>Editting the Makefile</h2><p>Original Makefile ( I used the provided mac Makefile base )</p><pre><code><div class="highlight"><span></span><span class="nv">BASE</span><span class="o">=</span>/usr/local +<span class="nv">BOOST_VERSION</span><span class="o">=</span>1_41 +<span class="nv">BOOST_INCLUDE</span> <span class="o">=</span> <span class="k">$(</span>BASE<span class="k">)</span>/include +<span class="nv">C_PLATFORM</span><span class="o">=</span>-arch i386 -arch ppc -isysroot /Developer/SDKs/MacOSX10.5.sdk -mmacosx-version-min<span class="o">=</span><span class="m">10</span>.4 +<span class="nv">GPP</span><span class="o">=</span>/usr/bin/g++ +<span class="nv">C_OPTIONS</span><span class="o">=</span> -O3 -DNDEBUG +<span class="nv">BOOST_LIB_VERSION</span><span class="o">=</span> + +include ../../makefile_common +</div></code></pre><p>I installed Boost 1.68.0-1 from Sam Bingner's repository. ( Otherwise I would have had to compile boost too 😫 )</p><p>Editted Makefile</p><pre><code><div class="highlight"><span></span><span class="nv">BASE</span><span class="o">=</span>/usr +<span class="nv">BOOST_VERSION</span><span class="o">=</span>1_68 +<span class="nv">BOOST_INCLUDE</span> <span class="o">=</span> <span class="k">$(</span>BASE<span class="k">)</span>/include +<span class="nv">C_PLATFORM</span><span class="o">=</span>-arch arm64 -isysroot /var/sdks/Latest.sdk +<span class="nv">GPP</span><span class="o">=</span>/usr/bin/g++ +<span class="nv">C_OPTIONS</span><span class="o">=</span> -O3 -DNDEBUG +<span class="nv">BOOST_LIB_VERSION</span><span class="o">=</span> + +include ../../makefile_common +</div></code></pre><h2>Updating the Source Code</h2><p>Of course since Boost 1.41 many things have been added and deprecated, that is why I had to edit the source code to make it work with version 1.68</p><h3>Error 1 - No Matching Constructor</h3><pre><code><div class="highlight"><span></span>../../../src/main/main.cpp:50:9: error: no matching constructor <span class="k">for</span> initialization of <span class="s1">'path'</span> <span class="o">(</span>aka <span class="s1">'boost::filesystem::path'</span><span class="o">)</span> +<span class="k">return</span> path<span class="o">(</span>str, boost::filesystem::native<span class="o">)</span><span class="p">;</span> +</div></code></pre><p>This was an easy fix, I just commented this and added a return statement to return the path</p><pre><code><div class="highlight"><span></span><span class="k">return</span> path<span class="o">(</span>str<span class="o">)</span> +</div></code></pre><h3>Error 2 - No Member Named 'native<em>file</em>string'</h3><pre><code><div class="highlight"><span></span>../../../src/main/main.cpp:665:57: error: no member named <span class="s1">'native_file_string'</span> in <span class="s1">'boost::filesystem::path'</span> + std::cerr << <span class="s2">"\n\nError: could not open \""</span> <span class="s"><< e.name</span>.native_file_string<span class="o">()</span> << <span class="s2">"\" for "</span> << <span class="o">(</span>e.in ? <span class="s2">"reading"</span> : <span class="s2">"writing"</span><span class="o">)</span> << <span class="s2">".\n"</span><span class="p">;</span> + ~~~~~~ ^ +../../../src/main/main.cpp:677:80: error: no member named <span class="s1">'native_file_string'</span> in <span class="s1">'boost::filesystem::path'</span> + std::cerr << <span class="s2">"\n\nParse error on line "</span> <span class="s"><< e.line</span> << <span class="s2">" in file \""</span> <span class="s"><< e.file</span>.native_file_string<span class="o">()</span> << <span class="s2">"\": "</span> <span class="s"><< e.re</span>ason <span class="s"><< '\n';</span> +<span class="s"> ~~~~~~ ^</span> +<span class="s">2 errors gen</span>erated. +</div></code></pre><p>Turns out <code>native_file_string</code> was deprecated in Boost 1.57 and replaced with just <code>string</code></p><h3>Error 3 - Library Not Found</h3><p>This one still boggles me because there was no reason for it to not work, as a workaround I downloaded the DEB, extracted it and used that path for compiling.</p><h3>Error 4 - No Member Named 'native<em>file</em>string' Again.</h3><p>But, this time in another file and I quickle fixed it</p><h2>Moment of Truth</h2><p>Obviously it was working on my iPad, but would it work on another device? I transfered the compiled binary and</p><img src="/assets/posts/autodock-vina/s1.png" alt=""AutoDock Vina running on my iPhone""/><p>The package is available on my repository and only depends on boost. ( Both, Vina and Vina-Split are part of the package)</p></div><span>Tagged with: </span><ul class="tag-list"><li><a href="/tags/ios">iOS</a></li><li><a href="/tags/jailbreak">Jailbreak</a></li><li><a href="/tags/cheminformatics">Cheminformatics</a></li><li><a href="/tags/autodock-vina">AutoDock Vina</a></li></ul><div id="disqus_thread"></div><script src="/assets/disqus.js"></script><noscript>Please enable JavaScript to view the comments</noscript></article></div><footer><p>Made with ❤️ using <a href="https://github.com/johnsundell/publish">Publish</a></p><p><a href="/feed.rss">RSS feed</a></p></footer></body></html>
\ No newline at end of file diff --git a/posts/index.html b/posts/index.html index ae03037..ff943f0 100644 --- a/posts/index.html +++ b/posts/index.html @@ -1 +1 @@ -<!DOCTYPE html><html lang="en"><head><meta charset="UTF-8"/><meta name="og:site_name" content="Navan Chauhan"/><link rel="canonical" href="https://navanchauhan.github.io/posts"/><meta name="twitter:url" content="https://navanchauhan.github.io/posts"/><meta name="og:url" content="https://navanchauhan.github.io/posts"/><title>Posts | Navan Chauhan</title><meta name="twitter:title" content="Posts | Navan Chauhan"/><meta name="og:title" content="Posts | Navan Chauhan"/><meta name="description" content="Welcome to my personal fragment of the internet. Majority of the posts should be complete."/><meta name="twitter:description" content="Welcome to my personal fragment of the internet. Majority of the posts should be complete."/><meta name="og:description" content="Welcome to my personal fragment of the internet. Majority of the posts should be complete."/><meta name="twitter:card" content="summary"/><link rel="stylesheet" href="/styles.css" type="text/css"/><meta name="viewport" content="width=device-width, initial-scale=1.0"/><link rel="shortcut icon" href="/images/favicon.png" type="image/png"/><link rel="alternate" href="/feed.rss" type="application/rss+xml" title="Subscribe to Navan Chauhan"/><meta name="twitter:image" content="https://navanchauhan.github.io/images/logo.png"/><meta name="og:image" content="https://navanchauhan.github.io/images/logo.png"/></head><head><script src="https://www.googletagmanager.com/gtag/js?id=UA-108635191-1v"></script><script>window.dataLayer = window.dataLayer || [];function gtag(){dataLayer.push(arguments);}gtag('js', new Date());gtag('config', 'UA-108635191-1');</script></head><body><header><div class="wrapper"><a class="site-name" href="/">Navan Chauhan</a><nav><ul><li><a href="/about">About Me</a></li><li><a class="selected" href="/posts">Posts</a></li><li><a href="/publications">Publications</a></li><li><a href="/assets/résumé.pdf">Résumé</a></li><li><a href="https://navanchauhan.github.io/repo">Repo</a></li></ul></nav></div></header><div class="wrapper"><h1>Posts</h1><p>Tips, tricks and tutorials which I think might be useful.</p><ul class="item-list"><li><article><h1><a href="/posts/2010-01-24-experiments">Experiments</a></h1><ul class="tag-list"><li><a href="/tags/experiment">Experiment</a></li></ul><span>🕑 1 minute read. January 24, 2010</span><p>Just a markdown file for all experiments related to the website</p></article></li><li><article><h1><a href="/posts/2019-05-05-Custom-Snowboard-Anemone-Theme">Creating your own custom theme for Snowboard or Anemone</a></h1><ul class="tag-list"><li><a href="/tags/tutorial">Tutorial</a></li><li><a href="/tags/jailbreak">Jailbreak</a></li><li><a href="/tags/designing">Designing</a></li><li><a href="/tags/snowboard">Snowboard</a></li><li><a href="/tags/anemone">Anemone</a></li></ul><span>🕑 5 minute read. May 5, 2019</span><p>Tutorial on creating your own custom theme for Snowboard or Anemone</p></article></li><li><article><h1><a href="/posts/2019-12-04-Google-Teachable-Machines">Image Classifier With Teachable Machines</a></h1><ul class="tag-list"><li><a href="/tags/tutorial">Tutorial</a></li></ul><span>🕑 2 minute read. December 4, 2019</span><p>Tutorial on creating a custom image classifier quickly with Google Teachanle Machines</p></article></li><li><article><h1><a href="/posts/2019-12-08-Image-Classifier-Tensorflow">Creating a Custom Image Classifier using Tensorflow 2.x and Keras for Detecting Malaria</a></h1><ul class="tag-list"><li><a href="/tags/tutorial">Tutorial</a></li><li><a href="/tags/tensorflow">Tensorflow</a></li><li><a href="/tags/colab">Colab</a></li></ul><span>🕑 4 minute read. December 8, 2019</span><p>Tutorial on creating an image classifier model using TensorFlow which detects malaria</p></article></li><li><article><h1><a href="/posts/2019-12-08-Splitting-Zips">Splitting ZIPs into Multiple Parts</a></h1><ul class="tag-list"><li><a href="/tags/codesnippet">Code-Snippet</a></li><li><a href="/tags/tutorial">Tutorial</a></li></ul><span>🕑 1 minute read. December 8, 2019</span><p>Short code snippet for splitting zips.</p></article></li><li><article><h1><a href="/posts/2019-12-10-TensorFlow-Model-Prediction">Making Predictions using Image Classifier (TensorFlow)</a></h1><ul class="tag-list"><li><a href="/tags/tutorial">Tutorial</a></li><li><a href="/tags/tensorflow">Tensorflow</a></li><li><a href="/tags/codesnippet">Code-Snippet</a></li></ul><span>🕑 1 minute read. December 10, 2019</span><p>Making predictions for image classification models built using TensorFlow</p></article></li><li><article><h1><a href="/posts/2019-12-16-TensorFlow-Polynomial-Regression">Polynomial Regression Using TensorFlow</a></h1><ul class="tag-list"><li><a href="/tags/tutorial">Tutorial</a></li><li><a href="/tags/tensorflow">Tensorflow</a></li><li><a href="/tags/colab">Colab</a></li></ul><span>🕑 17 minute read. December 16, 2019</span><p>Polynomial regression using TensorFlow</p></article></li><li><article><h1><a href="/posts/2019-12-22-Fake-News-Detector">Building a Fake News Detector with Turicreate</a></h1><ul class="tag-list"><li><a href="/tags/tutorial">Tutorial</a></li><li><a href="/tags/colab">Colab</a></li><li><a href="/tags/swiftui">SwiftUI</a></li><li><a href="/tags/turicreate">Turicreate</a></li></ul><span>🕑 7 minute read. December 22, 2019</span><p>In this tutorial we will build a fake news detecting app from scratch, using Turicreate for the machine learning model and SwiftUI for building the app</p></article></li><li><article><h1><a href="/posts/2020-01-14-Converting-between-PIL-NumPy">Converting between image and NumPy array</a></h1><ul class="tag-list"><li><a href="/tags/codesnippet">Code-Snippet</a></li><li><a href="/tags/tutorial">Tutorial</a></li></ul><span>🕑 1 minute read. January 14, 2020</span><p>Short code snippet for converting between PIL image and NumPy arrays.</p></article></li><li><article><h1><a href="/posts/2020-01-15-Setting-up-Kaggle-to-use-with-Colab">Setting up Kaggle to use with Google Colab</a></h1><ul class="tag-list"><li><a href="/tags/tutorial">Tutorial</a></li><li><a href="/tags/colab">Colab</a></li><li><a href="/tags/turicreate">Turicreate</a></li><li><a href="/tags/kaggle">Kaggle</a></li></ul><span>🕑 1 minute read. January 15, 2020</span><p>Tutorial on setting up kaggle, to use with Google Colab</p></article></li><li><article><h1><a href="/posts/2020-01-16-Image-Classifier-Using-Turicreate">Creating a Custom Image Classifier using Turicreate to detect Smoke and Fire</a></h1><ul class="tag-list"><li><a href="/tags/tutorial">Tutorial</a></li><li><a href="/tags/colab">Colab</a></li><li><a href="/tags/turicreate">Turicreate</a></li></ul><span>🕑 6 minute read. January 16, 2020</span><p>Tutorial on creating a custom Image Classifier using Turicreate and a dataset from Kaggle</p></article></li><li><article><h1><a href="/posts/2020-01-19-Connect-To-Bluetooth-Devices-Linux-Terminal">How to setup Bluetooth on a Raspberry Pi</a></h1><ul class="tag-list"><li><a href="/tags/codesnippet">Code-Snippet</a></li><li><a href="/tags/tutorial">tutorial</a></li><li><a href="/tags/raspberrypi">Raspberry-Pi</a></li><li><a href="/tags/linux">Linux</a></li></ul><span>🕑 1 minute read. January 19, 2020</span><p>Connecting to Bluetooth Devices using terminal, tested on Raspberry Pi Zero W</p></article></li><li><article><h1><a href="/posts/2020-03-03-Playing-With-Android-TV">Tinkering with an Android TV</a></h1><ul class="tag-list"><li><a href="/tags/androidtv">Android-TV</a></li><li><a href="/tags/android">Android</a></li></ul><span>🕑 1 minute read. March 3, 2020</span><p>Tinkering with an Android TV</p></article></li><li><article><h1><a href="/posts/2020-03-08-Making-Vaporwave-Track">Making My First Vaporwave Track (Remix)</a></h1><ul class="tag-list"><li><a href="/tags/vaporwave">Vaporwave</a></li><li><a href="/tags/music">Music</a></li></ul><span>🕑 2 minute read. March 8, 2020</span><p>I made my first vaporwave remix</p></article></li><li><article><h1><a href="/posts/2020-04-13-Fixing-X11-Error-AmberTools-macOS">Fixing X11 Error on macOS Catalina for AmberTools 18/19</a></h1><ul class="tag-list"><li><a href="/tags/moleculardynamics">Molecular-Dynamics</a></li><li><a href="/tags/macos">macOS</a></li></ul><span>🕑 2 minute read. April 13, 2020</span><p>Fixing Could not find the X11 libraries; you may need to edit config.h, AmberTools macOS Catalina</p></article></li><li><article><h1><a href="/posts/2020-05-31-compiling-open-babel-on-ios">Compiling Open Babel on iOS</a></h1><ul class="tag-list"><li><a href="/tags/ios">iOS</a></li><li><a href="/tags/jailbreak">Jailbreak</a></li><li><a href="/tags/cheminformatics">Cheminformatics</a></li><li><a href="/tags/openbabel">Open-Babel</a></li></ul><span>🕑 5 minute read. May 31, 2020</span><p>Compiling Open Babel on iOS</p></article></li><li><article><h1><a href="/posts/2020-06-01-Speeding-Up-Molecular-Docking-Workflow-AutoDock-Vina-and-PyMOL">Workflow for Lightning Fast Molecular Docking Part One</a></h1><ul class="tag-list"><li><a href="/tags/codesnippet">Code-Snippet</a></li><li><a href="/tags/moleculardocking">Molecular-Docking</a></li><li><a href="/tags/cheminformatics">Cheminformatics</a></li><li><a href="/tags/openbabel">Open-Babel</a></li></ul><span>🕑 2 minute read. June 1, 2020</span><p>This is my workflow for lightning fast molecular docking.</p></article></li><li><article><h1><a href="/posts/hello-world">Hello World</a></h1><ul class="tag-list"><li><a href="/tags/helloworld">hello-world</a></li></ul><span>🕑 1 minute read. April 16, 2019</span><p>My first post.</p></article></li></ul></div><footer><p>Made with ❤️ using <a href="https://github.com/johnsundell/publish">Publish</a></p><p><a href="/feed.rss">RSS feed</a></p></footer></body></html>
\ No newline at end of file +<!DOCTYPE html><html lang="en"><head><meta charset="UTF-8"/><meta name="og:site_name" content="Navan Chauhan"/><link rel="canonical" href="https://navanchauhan.github.io/posts"/><meta name="twitter:url" content="https://navanchauhan.github.io/posts"/><meta name="og:url" content="https://navanchauhan.github.io/posts"/><title>Posts | Navan Chauhan</title><meta name="twitter:title" content="Posts | Navan Chauhan"/><meta name="og:title" content="Posts | Navan Chauhan"/><meta name="description" content="Welcome to my personal fragment of the internet. Majority of the posts should be complete."/><meta name="twitter:description" content="Welcome to my personal fragment of the internet. Majority of the posts should be complete."/><meta name="og:description" content="Welcome to my personal fragment of the internet. Majority of the posts should be complete."/><meta name="twitter:card" content="summary"/><link rel="stylesheet" href="/styles.css" type="text/css"/><meta name="viewport" content="width=device-width, initial-scale=1.0"/><link rel="shortcut icon" href="/images/favicon.png" type="image/png"/><link rel="alternate" href="/feed.rss" type="application/rss+xml" title="Subscribe to Navan Chauhan"/><meta name="twitter:image" content="https://navanchauhan.github.io/images/logo.png"/><meta name="og:image" content="https://navanchauhan.github.io/images/logo.png"/></head><head><script src="https://www.googletagmanager.com/gtag/js?id=UA-108635191-1v"></script><script>window.dataLayer = window.dataLayer || [];function gtag(){dataLayer.push(arguments);}gtag('js', new Date());gtag('config', 'UA-108635191-1');</script></head><body><header><div class="wrapper"><a class="site-name" href="/">Navan Chauhan</a><nav><ul><li><a href="/about">About Me</a></li><li><a class="selected" href="/posts">Posts</a></li><li><a href="/publications">Publications</a></li><li><a href="/assets/résumé.pdf">Résumé</a></li><li><a href="https://navanchauhan.github.io/repo">Repo</a></li></ul></nav></div></header><div class="wrapper"><h1>Posts</h1><p>Tips, tricks and tutorials which I think might be useful.</p><ul class="item-list"><li><article><h1><a href="/posts/2010-01-24-experiments">Experiments</a></h1><ul class="tag-list"><li><a href="/tags/experiment">Experiment</a></li></ul><span>🕑 1 minute read. January 24, 2010</span><p>Just a markdown file for all experiments related to the website</p></article></li><li><article><h1><a href="/posts/2019-05-05-Custom-Snowboard-Anemone-Theme">Creating your own custom theme for Snowboard or Anemone</a></h1><ul class="tag-list"><li><a href="/tags/tutorial">Tutorial</a></li><li><a href="/tags/jailbreak">Jailbreak</a></li><li><a href="/tags/designing">Designing</a></li><li><a href="/tags/snowboard">Snowboard</a></li><li><a href="/tags/anemone">Anemone</a></li></ul><span>🕑 5 minute read. May 5, 2019</span><p>Tutorial on creating your own custom theme for Snowboard or Anemone</p></article></li><li><article><h1><a href="/posts/2019-12-04-Google-Teachable-Machines">Image Classifier With Teachable Machines</a></h1><ul class="tag-list"><li><a href="/tags/tutorial">Tutorial</a></li></ul><span>🕑 2 minute read. December 4, 2019</span><p>Tutorial on creating a custom image classifier quickly with Google Teachanle Machines</p></article></li><li><article><h1><a href="/posts/2019-12-08-Image-Classifier-Tensorflow">Creating a Custom Image Classifier using Tensorflow 2.x and Keras for Detecting Malaria</a></h1><ul class="tag-list"><li><a href="/tags/tutorial">Tutorial</a></li><li><a href="/tags/tensorflow">Tensorflow</a></li><li><a href="/tags/colab">Colab</a></li></ul><span>🕑 4 minute read. December 8, 2019</span><p>Tutorial on creating an image classifier model using TensorFlow which detects malaria</p></article></li><li><article><h1><a href="/posts/2019-12-08-Splitting-Zips">Splitting ZIPs into Multiple Parts</a></h1><ul class="tag-list"><li><a href="/tags/codesnippet">Code-Snippet</a></li><li><a href="/tags/tutorial">Tutorial</a></li></ul><span>🕑 1 minute read. December 8, 2019</span><p>Short code snippet for splitting zips.</p></article></li><li><article><h1><a href="/posts/2019-12-10-TensorFlow-Model-Prediction">Making Predictions using Image Classifier (TensorFlow)</a></h1><ul class="tag-list"><li><a href="/tags/tutorial">Tutorial</a></li><li><a href="/tags/tensorflow">Tensorflow</a></li><li><a href="/tags/codesnippet">Code-Snippet</a></li></ul><span>🕑 1 minute read. December 10, 2019</span><p>Making predictions for image classification models built using TensorFlow</p></article></li><li><article><h1><a href="/posts/2019-12-16-TensorFlow-Polynomial-Regression">Polynomial Regression Using TensorFlow</a></h1><ul class="tag-list"><li><a href="/tags/tutorial">Tutorial</a></li><li><a href="/tags/tensorflow">Tensorflow</a></li><li><a href="/tags/colab">Colab</a></li></ul><span>🕑 17 minute read. December 16, 2019</span><p>Polynomial regression using TensorFlow</p></article></li><li><article><h1><a href="/posts/2019-12-22-Fake-News-Detector">Building a Fake News Detector with Turicreate</a></h1><ul class="tag-list"><li><a href="/tags/tutorial">Tutorial</a></li><li><a href="/tags/colab">Colab</a></li><li><a href="/tags/swiftui">SwiftUI</a></li><li><a href="/tags/turicreate">Turicreate</a></li></ul><span>🕑 7 minute read. December 22, 2019</span><p>In this tutorial we will build a fake news detecting app from scratch, using Turicreate for the machine learning model and SwiftUI for building the app</p></article></li><li><article><h1><a href="/posts/2020-01-14-Converting-between-PIL-NumPy">Converting between image and NumPy array</a></h1><ul class="tag-list"><li><a href="/tags/codesnippet">Code-Snippet</a></li><li><a href="/tags/tutorial">Tutorial</a></li></ul><span>🕑 1 minute read. January 14, 2020</span><p>Short code snippet for converting between PIL image and NumPy arrays.</p></article></li><li><article><h1><a href="/posts/2020-01-15-Setting-up-Kaggle-to-use-with-Colab">Setting up Kaggle to use with Google Colab</a></h1><ul class="tag-list"><li><a href="/tags/tutorial">Tutorial</a></li><li><a href="/tags/colab">Colab</a></li><li><a href="/tags/turicreate">Turicreate</a></li><li><a href="/tags/kaggle">Kaggle</a></li></ul><span>🕑 1 minute read. January 15, 2020</span><p>Tutorial on setting up kaggle, to use with Google Colab</p></article></li><li><article><h1><a href="/posts/2020-01-16-Image-Classifier-Using-Turicreate">Creating a Custom Image Classifier using Turicreate to detect Smoke and Fire</a></h1><ul class="tag-list"><li><a href="/tags/tutorial">Tutorial</a></li><li><a href="/tags/colab">Colab</a></li><li><a href="/tags/turicreate">Turicreate</a></li></ul><span>🕑 6 minute read. January 16, 2020</span><p>Tutorial on creating a custom Image Classifier using Turicreate and a dataset from Kaggle</p></article></li><li><article><h1><a href="/posts/2020-01-19-Connect-To-Bluetooth-Devices-Linux-Terminal">How to setup Bluetooth on a Raspberry Pi</a></h1><ul class="tag-list"><li><a href="/tags/codesnippet">Code-Snippet</a></li><li><a href="/tags/tutorial">tutorial</a></li><li><a href="/tags/raspberrypi">Raspberry-Pi</a></li><li><a href="/tags/linux">Linux</a></li></ul><span>🕑 1 minute read. January 19, 2020</span><p>Connecting to Bluetooth Devices using terminal, tested on Raspberry Pi Zero W</p></article></li><li><article><h1><a href="/posts/2020-03-03-Playing-With-Android-TV">Tinkering with an Android TV</a></h1><ul class="tag-list"><li><a href="/tags/androidtv">Android-TV</a></li><li><a href="/tags/android">Android</a></li></ul><span>🕑 1 minute read. March 3, 2020</span><p>Tinkering with an Android TV</p></article></li><li><article><h1><a href="/posts/2020-03-08-Making-Vaporwave-Track">Making My First Vaporwave Track (Remix)</a></h1><ul class="tag-list"><li><a href="/tags/vaporwave">Vaporwave</a></li><li><a href="/tags/music">Music</a></li></ul><span>🕑 2 minute read. March 8, 2020</span><p>I made my first vaporwave remix</p></article></li><li><article><h1><a href="/posts/2020-04-13-Fixing-X11-Error-AmberTools-macOS">Fixing X11 Error on macOS Catalina for AmberTools 18/19</a></h1><ul class="tag-list"><li><a href="/tags/moleculardynamics">Molecular-Dynamics</a></li><li><a href="/tags/macos">macOS</a></li></ul><span>🕑 2 minute read. April 13, 2020</span><p>Fixing Could not find the X11 libraries; you may need to edit config.h, AmberTools macOS Catalina</p></article></li><li><article><h1><a href="/posts/2020-05-31-compiling-open-babel-on-ios">Compiling Open Babel on iOS</a></h1><ul class="tag-list"><li><a href="/tags/ios">iOS</a></li><li><a href="/tags/jailbreak">Jailbreak</a></li><li><a href="/tags/cheminformatics">Cheminformatics</a></li><li><a href="/tags/openbabel">Open-Babel</a></li></ul><span>🕑 5 minute read. May 31, 2020</span><p>Compiling Open Babel on iOS</p></article></li><li><article><h1><a href="/posts/2020-06-01-Speeding-Up-Molecular-Docking-Workflow-AutoDock-Vina-and-PyMOL">Workflow for Lightning Fast Molecular Docking Part One</a></h1><ul class="tag-list"><li><a href="/tags/codesnippet">Code-Snippet</a></li><li><a href="/tags/moleculardocking">Molecular-Docking</a></li><li><a href="/tags/cheminformatics">Cheminformatics</a></li><li><a href="/tags/openbabel">Open-Babel</a></li></ul><span>🕑 2 minute read. June 1, 2020</span><p>This is my workflow for lightning fast molecular docking.</p></article></li><li><article><h1><a href="/posts/2020-06-02-Compiling-AutoDock-Vina-on-iOS">Compiling AutoDock Vina on iOS</a></h1><ul class="tag-list"><li><a href="/tags/ios">iOS</a></li><li><a href="/tags/jailbreak">Jailbreak</a></li><li><a href="/tags/cheminformatics">Cheminformatics</a></li><li><a href="/tags/autodock-vina">AutoDock Vina</a></li></ul><span>🕑 3 minute read. June 2, 2020</span><p>Compiling AutoDock Vina on iOS</p></article></li><li><article><h1><a href="/posts/hello-world">Hello World</a></h1><ul class="tag-list"><li><a href="/tags/helloworld">hello-world</a></li></ul><span>🕑 1 minute read. April 16, 2019</span><p>My first post.</p></article></li></ul></div><footer><p>Made with ❤️ using <a href="https://github.com/johnsundell/publish">Publish</a></p><p><a href="/feed.rss">RSS feed</a></p></footer></body></html>
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