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diff --git a/docs/posts/2020-05-31-compiling-open-babel-on-ios.html b/docs/posts/2020-05-31-compiling-open-babel-on-ios.html index 4e26a74..056e7e9 100644 --- a/docs/posts/2020-05-31-compiling-open-babel-on-ios.html +++ b/docs/posts/2020-05-31-compiling-open-babel-on-ios.html @@ -2,14 +2,27 @@ <html lang="en"> <head> - <link rel="stylesheet" href="https://unpkg.com/latex.css/style.min.css" /> + <meta http-equiv="X-UA-Compatible" content="IE=edge"> + <meta http-equiv="content-type" content="text/html; charset=utf-8"> + <meta name="viewport" content="width=device-width, initial-scale=1.0, maximum-scale=1"> + <meta name="theme-color" content="#6a9fb5"> + + <title>Compiling Open Babel on iOS</title> + + <!-- + <link rel="stylesheet" href="https://unpkg.com/latex.css/style.min.css" /> + --> + + <link rel="stylesheet" href="/assets/c-hyde.css" /> + + <link rel="stylesheet" href="http://fonts.googleapis.com/css?family=PT+Sans:400,400italic,700|Abril+Fatface"> + <link rel="stylesheet" href="/assets/main.css" /> <meta charset="utf-8"> <meta name="viewport" content="width=device-width, initial-scale=1.0"> - <title>Compiling Open Babel on iOS</title> <meta name="og:site_name" content="Navan Chauhan" /> <link rel="canonical" href="https://web.navan.dev/posts/2020-05-31-compiling-open-babel-on-ios.html" /> - <meta name="twitter:url" content="https://web.navan.dev/posts/2020-05-31-compiling-open-babel-on-ios.html /> + <meta name="twitter:url" content="https://web.navan.dev/posts/2020-05-31-compiling-open-babel-on-ios.html" /> <meta name="og:url" content="https://web.navan.dev/posts/2020-05-31-compiling-open-babel-on-ios.html" /> <meta name="twitter:title" content="Compiling Open Babel on iOS" /> <meta name="og:title" content="Compiling Open Babel on iOS" /> @@ -26,24 +39,43 @@ <script data-goatcounter="https://navanchauhan.goatcounter.com/count" async src="//gc.zgo.at/count.js"></script> <script defer data-domain="web.navan.dev" src="https://plausible.io/js/plausible.js"></script> - <link rel="manifest" href="manifest.json" /> + <link rel="manifest" href="/manifest.json" /> </head> -<body> - <center><nav style="display: block;"> -| -<a href="/">home</a> | -<a href="/about/">about/links</a> | -<a href="/posts/">posts</a> | -<!--<a href="/publications/">publications</a> |--> -<!--<a href="/repo/">iOS repo</a> |--> -<a href="/feed.rss">RSS Feed</a> | -</nav> -</center> +<body class="theme-base-0d"> + <div class="sidebar"> + <div class="container sidebar-sticky"> + <div class="sidebar-about"> + <h1><a href="/">Navan</a></h1> + <p class="lead" id="random-lead">Alea iacta est.</p> + </div> + + <ul class="sidebar-nav"> + <li><a class="sidebar-nav-item" href="/about/">about/links</a></li> + <li><a class="sidebar-nav-item" href="/posts/">posts</a></li> + <li><a class="sidebar-nav-item" href="/3D-Designs/">3D designs</a></li> + <li><a class="sidebar-nav-item" href="/feed.rss">RSS Feed</a></li> + <li><a class="sidebar-nav-item" href="/colophon/">colophon</a></li> + </ul> + <div class="copyright"><p>© 2019-2024. Navan Chauhan <br> <a href="/feed.rss">RSS</a></p></div> + </div> +</div> + +<script> +let phrases = [ + "Something Funny", "Veni, vidi, vici", "Alea iacta est", "In vino veritas", "Acta, non verba", "Castigat ridendo mores", + "Cui bono?", "Memento vivere", "अहम् ब्रह्मास्मि", "अनुगच्छतु प्रवाहं", "चरन्मार्गान्विजानाति", "coq de cheval", "我愛啤酒" + ]; + +let new_phrase = phrases[Math.floor(Math.random()*phrases.length)]; + +let lead = document.getElementById("random-lead"); +lead.innerText = new_phrase; +</script> + <div class="content container"> -<main> - - <h1>Compiling Open Babel on iOS</h1> + <div class="post"> + <h1 id="compiling-open-babel-on-ios">Compiling Open Babel on iOS</h1> <p>Due to the fact that my summer vacations started today, I had the brilliant idea of trying to run open babel on my iPad. @@ -51,17 +83,17 @@ To give a little background, I had tried to compile AutoDock Vina using a cross- <p>I am running the Checkr1n jailbreak on my iPad and the Unc0ver jailbreak on my phone.</p> -<h2>But Why?</h2> +<h2 id="but-why">But Why?</h2> <p>Well, just because I can. This is literally the only reason I tried compiling it and also partially because in the long run I want to compile AutoDock Vina so I can do Molecular Docking on the go.</p> -<h2>Let's Go!</h2> +<h2 id="lets-go">Let's Go!</h2> <p>How hard can it be to compile open babel right? It is just a simple software with clear and concise build instructions. I just need to use <code>cmake</code> to build and the <code>make</code> to install.</p> <p>It is 11 AM in the morning. I install <code>clang, cmake and make</code> from the Sam Bingner's repository, fired up ssh, downloaded the source code and ran the build command.`clang</p> -<h3>Fail No. 1</h3> +<h3 id="fail-no-1">Fail No. 1</h3> <p>I couldn't even get cmake to run, I did a little digging around StackOverflow and founf that I needed the iOS SDK, sure no problem. I waited for Xcode to update and transferred the SDKs to my iPad </p> @@ -70,7 +102,7 @@ To give a little background, I had tried to compile AutoDock Vina using a cross- <p>Them I told cmake that this is the location for my SDK 😠. Successful! Now I just needed to use make.</p> -<h3>Fail No. 2</h3> +<h3 id="fail-no-2">Fail No. 2</h3> <p>It was giving the error that thread-local-storage was not supported on this device.</p> @@ -124,11 +156,11 @@ make: *** [Makefile:129: all] Error 2 <p><img src="/assets/posts/open-babel/s1.png" alt=""Open-Babel running on my iPad"" /></p> -<h2>Packaging as a deb</h2> +<h2 id="packaging-as-a-deb">Packaging as a deb</h2> <p>This was pretty straight forward, I tried installing it on my iPad and it was working pretty smoothly.</p> -<h2>Moment of Truth</h2> +<h2 id="moment-of-truth">Moment of Truth</h2> <p>So I airdropped the .deb to my phone and tried installing it, the installation was successful but when I tried <code>obabel</code> it just aborted.</p> @@ -146,7 +178,7 @@ make: *** [Makefile:129: all] Error 2 <p>I spent 2 hours around this problem, only to see the documentation and realise I hadn't setup the environment variable 🤦♂️</p> -<h2>The Final Fix ( For Now )</h2> +<h2 id="the-final-fix-for-now">The Final Fix ( For Now )</h2> <pre><code>export BABEL_DATADIR="/usr/share/openbabel/3.1.0" export BABEL_LIBDIR="/usr/lib/openbabel/3.1.0" @@ -160,14 +192,15 @@ export BABEL_LIBDIR="/usr/lib/openbabel/3.1.0" <p>Edit 1: Added Screenshots, had to replicate the errors.</p> + </div> <blockquote>If you have scrolled this far, consider subscribing to my mailing list <a href="https://listmonk.navan.dev/subscription/form">here.</a> You can subscribe to either a specific type of post you are interested in, or subscribe to everything with the "Everything" list.</blockquote> <script data-isso="https://comments.navan.dev/" src="https://comments.navan.dev/js/embed.min.js"></script> <section id="isso-thread"> <noscript>Javascript needs to be activated to view comments.</noscript> </section> -</main> + </div> <script src="assets/manup.min.js"></script> <script src="/pwabuilder-sw-register.js"></script> </body> |