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diff --git a/docs/posts/2020-06-02-Compiling-AutoDock-Vina-on-iOS.html b/docs/posts/2020-06-02-Compiling-AutoDock-Vina-on-iOS.html index 330151d..814ce86 100644 --- a/docs/posts/2020-06-02-Compiling-AutoDock-Vina-on-iOS.html +++ b/docs/posts/2020-06-02-Compiling-AutoDock-Vina-on-iOS.html @@ -2,14 +2,27 @@ <html lang="en"> <head> - <link rel="stylesheet" href="https://unpkg.com/latex.css/style.min.css" /> + <meta http-equiv="X-UA-Compatible" content="IE=edge"> + <meta http-equiv="content-type" content="text/html; charset=utf-8"> + <meta name="viewport" content="width=device-width, initial-scale=1.0, maximum-scale=1"> + <meta name="theme-color" content="#6a9fb5"> + + <title>Compiling AutoDock Vina on iOS</title> + + <!-- + <link rel="stylesheet" href="https://unpkg.com/latex.css/style.min.css" /> + --> + + <link rel="stylesheet" href="/assets/c-hyde.css" /> + + <link rel="stylesheet" href="http://fonts.googleapis.com/css?family=PT+Sans:400,400italic,700|Abril+Fatface"> + <link rel="stylesheet" href="/assets/main.css" /> <meta charset="utf-8"> <meta name="viewport" content="width=device-width, initial-scale=1.0"> - <title>Compiling AutoDock Vina on iOS</title> <meta name="og:site_name" content="Navan Chauhan" /> <link rel="canonical" href="https://web.navan.dev/posts/2020-06-02-Compiling-AutoDock-Vina-on-iOS.html" /> - <meta name="twitter:url" content="https://web.navan.dev/posts/2020-06-02-Compiling-AutoDock-Vina-on-iOS.html /> + <meta name="twitter:url" content="https://web.navan.dev/posts/2020-06-02-Compiling-AutoDock-Vina-on-iOS.html" /> <meta name="og:url" content="https://web.navan.dev/posts/2020-06-02-Compiling-AutoDock-Vina-on-iOS.html" /> <meta name="twitter:title" content="Compiling AutoDock Vina on iOS" /> <meta name="og:title" content="Compiling AutoDock Vina on iOS" /> @@ -26,32 +39,51 @@ <script data-goatcounter="https://navanchauhan.goatcounter.com/count" async src="//gc.zgo.at/count.js"></script> <script defer data-domain="web.navan.dev" src="https://plausible.io/js/plausible.js"></script> - <link rel="manifest" href="manifest.json" /> + <link rel="manifest" href="/manifest.json" /> </head> -<body> - <center><nav style="display: block;"> -| -<a href="/">home</a> | -<a href="/about/">about/links</a> | -<a href="/posts/">posts</a> | -<!--<a href="/publications/">publications</a> |--> -<!--<a href="/repo/">iOS repo</a> |--> -<a href="/feed.rss">RSS Feed</a> | -</nav> -</center> +<body class="theme-base-0d"> + <div class="sidebar"> + <div class="container sidebar-sticky"> + <div class="sidebar-about"> + <h1><a href="/">Navan</a></h1> + <p class="lead" id="random-lead">Alea iacta est.</p> + </div> + + <ul class="sidebar-nav"> + <li><a class="sidebar-nav-item" href="/about/">about/links</a></li> + <li><a class="sidebar-nav-item" href="/posts/">posts</a></li> + <li><a class="sidebar-nav-item" href="/3D-Designs/">3D designs</a></li> + <li><a class="sidebar-nav-item" href="/feed.rss">RSS Feed</a></li> + <li><a class="sidebar-nav-item" href="/colophon/">colophon</a></li> + </ul> + <div class="copyright"><p>© 2019-2024. Navan Chauhan <br> <a href="/feed.rss">RSS</a></p></div> + </div> +</div> + +<script> +let phrases = [ + "Something Funny", "Veni, vidi, vici", "Alea iacta est", "In vino veritas", "Acta, non verba", "Castigat ridendo mores", + "Cui bono?", "Memento vivere", "अहम् ब्रह्मास्मि", "अनुगच्छतु प्रवाहं", "चरन्मार्गान्विजानाति", "coq de cheval", "我愛啤酒" + ]; + +let new_phrase = phrases[Math.floor(Math.random()*phrases.length)]; + +let lead = document.getElementById("random-lead"); +lead.innerText = new_phrase; +</script> + <div class="content container"> -<main> - - <h1>Compiling AutoDock Vina on iOS</h1> + <div class="post"> + <h1 id="compiling-autodock-vina-on-ios">Compiling AutoDock Vina on iOS</h1> <p>Why? Because I can.</p> -<h2>Installing makedepend</h2> +<h2 id="installing-makedepend">Installing makedepend</h2> <p><code>makedepend</code> is a Unix tool used to generate dependencies of C source files. Most modern programs do not use this anymore, but then again AutoDock Vina's source code hasn't been changed since 2011. The first hurdle came when I saw that there was no makedepend command, neither was there any package on any development repository for iOS. So, I tracked down the original source code for <code>makedepend</code> (https://github.com/DerellLicht/makedepend). According to the repository this is actually the source code for the makedepend utility that came with some XWindows distribution back around Y2K. I am pretty sure there is a problem with my current compiler configuration because I had to manually edit the <code>Makefile</code> to provide the path to the iOS SDKs using the <code>-isysroot</code> flag.</p> -<h2>Editing the Makefile</h2> +<h2 id="editing-the-makefile">Editing the Makefile</h2> <p>Original Makefile ( I used the provided mac Makefile base )</p> @@ -82,11 +114,11 @@ include ../../makefile_common </code></pre> -<h2>Updating the Source Code</h2> +<h2 id="updating-the-source-code">Updating the Source Code</h2> <p>Of course since Boost 1.41 many things have been added and deprecated, that is why I had to edit the source code to make it work with version 1.68</p> -<h3>Error 1 - No Matching Constructor</h3> +<h3 id="error-1-no-matching-constructor">Error 1 - No Matching Constructor</h3> <pre><code>../../../src/main/main.cpp:50:9: error: no matching constructor for initialization of 'path' (aka 'boost::filesystem::path') return path(str, boost::filesystem::native); @@ -97,7 +129,7 @@ return path(str, boost::filesystem::native); <pre><code>return path(str) </code></pre> -<h3>Error 2 - No Member Named 'native<em>file</em>string'</h3> +<h3 id="error-2-no-member-named-native_file_string">Error 2 - No Member Named 'native<em>file</em>string'</h3> <pre><code>../../../src/main/main.cpp:665:57: error: no member named 'native_file_string' in 'boost::filesystem::path' std::cerr << "\n\nError: could not open \"" << e.name.native_file_string() << "\" for " << (e.in ? "reading" : "writing") << ".\n"; @@ -110,15 +142,15 @@ return path(str, boost::filesystem::native); <p>Turns out <code>native_file_string</code> was deprecated in Boost 1.57 and replaced with just <code>string</code></p> -<h3>Error 3 - Library Not Found</h3> +<h3 id="error-3-library-not-found">Error 3 - Library Not Found</h3> <p>This one still boggles me because there was no reason for it to not work, as a workaround I downloaded the DEB, extracted it and used that path for compiling.</p> -<h3>Error 4 - No Member Named 'native<em>file</em>string' Again.</h3> +<h3 id="error-4-no-member-named-native_file_string-again">Error 4 - No Member Named 'native<em>file</em>string' Again.</h3> <p>But, this time in another file and I quickly fixed it</p> -<h2>Moment of Truth</h2> +<h2 id="moment-of-truth">Moment of Truth</h2> <p>Obviously it was working on my iPad, but would it work on another device? I transferred the compiled binary and </p> @@ -126,14 +158,15 @@ return path(str, boost::filesystem::native); <p>The package is available on my repository and only depends on boost. ( Both, Vina and Vina-Split are part of the package)</p> + </div> <blockquote>If you have scrolled this far, consider subscribing to my mailing list <a href="https://listmonk.navan.dev/subscription/form">here.</a> You can subscribe to either a specific type of post you are interested in, or subscribe to everything with the "Everything" list.</blockquote> <script data-isso="https://comments.navan.dev/" src="https://comments.navan.dev/js/embed.min.js"></script> <section id="isso-thread"> <noscript>Javascript needs to be activated to view comments.</noscript> </section> -</main> + </div> <script src="assets/manup.min.js"></script> <script src="/pwabuilder-sw-register.js"></script> </body> |