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diff --git a/posts/2020-06-02-Compiling-AutoDock-Vina-on-iOS/index.html b/posts/2020-06-02-Compiling-AutoDock-Vina-on-iOS/index.html index 38a8ba0..cd39938 100644 --- a/posts/2020-06-02-Compiling-AutoDock-Vina-on-iOS/index.html +++ b/posts/2020-06-02-Compiling-AutoDock-Vina-on-iOS/index.html @@ -1,4 +1,4 @@ -<!DOCTYPE html><html lang="en"><head><meta charset="UTF-8"/><meta name="og:site_name" content="Navan Chauhan"/><link rel="canonical" href="https://navanchauhan.github.io/posts/2020-06-02-Compiling-AutoDock-Vina-on-iOS"/><meta name="twitter:url" content="https://navanchauhan.github.io/posts/2020-06-02-Compiling-AutoDock-Vina-on-iOS"/><meta name="og:url" content="https://navanchauhan.github.io/posts/2020-06-02-Compiling-AutoDock-Vina-on-iOS"/><title>Compiling AutoDock Vina on iOS | Navan Chauhan</title><meta name="twitter:title" content="Compiling AutoDock Vina on iOS | Navan Chauhan"/><meta name="og:title" content="Compiling AutoDock Vina on iOS | Navan Chauhan"/><meta name="description" content="Compiling AutoDock Vina on iOS"/><meta name="twitter:description" content="Compiling AutoDock Vina on iOS"/><meta name="og:description" content="Compiling AutoDock Vina on iOS"/><meta name="twitter:card" content="summary"/><link rel="stylesheet" href="/styles.css" type="text/css"/><meta name="viewport" content="width=device-width, initial-scale=1.0"/><link rel="shortcut icon" href="/images/favicon.png" type="image/png"/><link rel="alternate" href="/feed.rss" type="application/rss+xml" title="Subscribe to Navan Chauhan"/><meta name="twitter:image" content="https://navanchauhan.github.io/images/logo.png"/><meta name="og:image" content="https://navanchauhan.github.io/images/logo.png"/></head><head><script>var _paq=window._paq=window._paq||[];_paq.push(["trackPageView"]),_paq.push(["enableLinkTracking"]),function(){_paq.push(["setTrackerUrl","https://navanchauhan.matomo.cloud/matomo.php"]),_paq.push(["setSiteId","1"]);var a=document,t=a.createElement("script"),e=a.getElementsByTagName("script")[0];t.type="text/javascript",t.async=!0,t.src="//cdn.matomo.cloud/navanchauhan.matomo.cloud/matomo.js",e.parentNode.insertBefore(t,e)}();</script></head><head><script src="https://www.googletagmanager.com/gtag/js?id=UA-108635191-1v"></script><script>window.dataLayer = window.dataLayer || [];function gtag(){dataLayer.push(arguments);}gtag('js', new Date());gtag('config', 'UA-108635191-1');</script></head><body class="item-page"><header><div class="wrapper"><a class="site-name" href="/">Navan Chauhan</a><nav><ul><li><a href="/about">About Me</a></li><li><a class="selected" href="/posts">Posts</a></li><li><a href="/publications">Publications</a></li><li><a href="/assets/résumé.pdf">Résumé</a></li><li><a href="https://navanchauhan.github.io/repo">Repo</a></li></ul></nav></div></header><div class="wrapper"><article><div class="content"><span class="reading-time">3 minute read</span><span class="reading-time">Created on June 2, 2020</span><h1>Compiling AutoDock Vina on iOS</h1><p>Why? Because I can.</p><h2>Installing makedepend</h2><p><code>makedepend</code> is a Unix tool used to generate dependencies of C source files. Most modern programes do not use this anymore, but then again AutoDock Vina's source code hasn't been changed since 2011. The first hurdle came when I saw that there was no makedepend command, neither was there any package on any development repository for iOS. So, I tracked down the original source code for <code>makedepend</code> (https://github.com/DerellLicht/makedepend). According to the repository this is actually the source code for the makedepend utility that came with some XWindows distribution back around Y2K. I am pretty sure there is a problem with my current compiler configuration because I had to manually edit the <code>Makefile</code> to provide the path to the iOS SDKs using the <code>-isysroot</code> flag.</p><h2>Editting the Makefile</h2><p>Original Makefile ( I used the provided mac Makefile base )</p><pre><code><div class="highlight"><span></span><span class="nv">BASE</span><span class="o">=</span>/usr/local +<!DOCTYPE html><html lang="en"><head><meta charset="UTF-8"/><meta name="og:site_name" content="Navan Chauhan"/><link rel="canonical" href="https://navanchauhan.github.io/posts/2020-06-02-Compiling-AutoDock-Vina-on-iOS"/><meta name="twitter:url" content="https://navanchauhan.github.io/posts/2020-06-02-Compiling-AutoDock-Vina-on-iOS"/><meta name="og:url" content="https://navanchauhan.github.io/posts/2020-06-02-Compiling-AutoDock-Vina-on-iOS"/><title>Compiling AutoDock Vina on iOS | Navan Chauhan</title><meta name="twitter:title" content="Compiling AutoDock Vina on iOS | Navan Chauhan"/><meta name="og:title" content="Compiling AutoDock Vina on iOS | Navan Chauhan"/><meta name="description" content="Compiling AutoDock Vina on iOS"/><meta name="twitter:description" content="Compiling AutoDock Vina on iOS"/><meta name="og:description" content="Compiling AutoDock Vina on iOS"/><meta name="twitter:card" content="summary"/><link rel="stylesheet" href="/styles.css" type="text/css"/><meta name="viewport" content="width=device-width, initial-scale=1.0"/><link rel="shortcut icon" href="/images/favicon.png" type="image/png"/><link rel="alternate" href="/feed.rss" type="application/rss+xml" title="Subscribe to Navan Chauhan"/><meta name="twitter:image" content="https://navanchauhan.github.io/images/logo.png"/><meta name="og:image" content="https://navanchauhan.github.io/images/logo.png"/></head><head><script>var _paq=window._paq=window._paq||[];_paq.push(['trackPageView']),_paq.push(['enableLinkTracking']),function(){var a='http://navanspi.duckdns.org:6969/analytics/';_paq.push(['setTrackerUrl',a+'matomo.php']),_paq.push(['setSiteId','1']);var e=document,t=e.createElement('script'),p=e.getElementsByTagName('script')[0];t.type='text/javascript',t.async=!0,t.src=a+'matomo.js',p.parentNode.insertBefore(t,p)}();</script></head><head><script src="https://www.googletagmanager.com/gtag/js?id=UA-108635191-1v"></script><script>window.dataLayer = window.dataLayer || [];function gtag(){dataLayer.push(arguments);}gtag('js', new Date());gtag('config', 'UA-108635191-1');</script></head><body class="item-page"><header><div class="wrapper"><a class="site-name" href="/">Navan Chauhan</a><nav><ul><li><a href="/about">About Me</a></li><li><a class="selected" href="/posts">Posts</a></li><li><a href="/publications">Publications</a></li><li><a href="/assets/résumé.pdf">Résumé</a></li><li><a href="https://navanchauhan.github.io/repo">Repo</a></li></ul></nav></div></header><div class="wrapper"><article><div class="content"><span class="reading-time">3 minute read</span><span class="reading-time">Created on June 2, 2020</span><h1>Compiling AutoDock Vina on iOS</h1><p>Why? Because I can.</p><h2>Installing makedepend</h2><p><code>makedepend</code> is a Unix tool used to generate dependencies of C source files. Most modern programes do not use this anymore, but then again AutoDock Vina's source code hasn't been changed since 2011. The first hurdle came when I saw that there was no makedepend command, neither was there any package on any development repository for iOS. So, I tracked down the original source code for <code>makedepend</code> (https://github.com/DerellLicht/makedepend). According to the repository this is actually the source code for the makedepend utility that came with some XWindows distribution back around Y2K. I am pretty sure there is a problem with my current compiler configuration because I had to manually edit the <code>Makefile</code> to provide the path to the iOS SDKs using the <code>-isysroot</code> flag.</p><h2>Editting the Makefile</h2><p>Original Makefile ( I used the provided mac Makefile base )</p><pre><code><div class="highlight"><span></span><span class="nv">BASE</span><span class="o">=</span>/usr/local <span class="nv">BOOST_VERSION</span><span class="o">=</span>1_41 <span class="nv">BOOST_INCLUDE</span> <span class="o">=</span> <span class="k">$(</span>BASE<span class="k">)</span>/include <span class="nv">C_PLATFORM</span><span class="o">=</span>-arch i386 -arch ppc -isysroot /Developer/SDKs/MacOSX10.5.sdk -mmacosx-version-min<span class="o">=</span><span class="m">10</span>.4 |