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diff --git a/posts/2020-07-01-Install-rdkit-colab/index.html b/posts/2020-07-01-Install-rdkit-colab/index.html index 7e7af8d..963add1 100644 --- a/posts/2020-07-01-Install-rdkit-colab/index.html +++ b/posts/2020-07-01-Install-rdkit-colab/index.html @@ -1,4 +1,4 @@ -<!DOCTYPE html><html lang="en"><head><meta charset="UTF-8"/><meta name="og:site_name" content="Navan Chauhan"/><link rel="canonical" href="https://navanchauhan.github.io/posts/2020-07-01-Install-rdkit-colab"/><meta name="twitter:url" content="https://navanchauhan.github.io/posts/2020-07-01-Install-rdkit-colab"/><meta name="og:url" content="https://navanchauhan.github.io/posts/2020-07-01-Install-rdkit-colab"/><title>Installing RDKit on Google Colab | Navan Chauhan</title><meta name="twitter:title" content="Installing RDKit on Google Colab | Navan Chauhan"/><meta name="og:title" content="Installing RDKit on Google Colab | Navan Chauhan"/><meta name="description" content="Install RDKit on Google Colab with one code snippet."/><meta name="twitter:description" content="Install RDKit on Google Colab with one code snippet."/><meta name="og:description" content="Install RDKit on Google Colab with one code snippet."/><meta name="twitter:card" content="summary"/><link rel="stylesheet" href="/styles.css" type="text/css"/><meta name="viewport" content="width=device-width, initial-scale=1.0"/><link rel="shortcut icon" href="/images/favicon.png" type="image/png"/><link rel="alternate" href="/feed.rss" type="application/rss+xml" title="Subscribe to Navan Chauhan"/><meta name="twitter:image" content="https://navanchauhan.github.io/images/logo.png"/><meta name="og:image" content="https://navanchauhan.github.io/images/logo.png"/></head><head><script async src="//gc.zgo.at/count.js" data-goatcounter="https://navanchauhan.goatcounter.com/count"></script></head><body class="item-page"><header><div class="wrapper"><a class="site-name" href="/">Navan Chauhan</a><nav><ul><li><a href="/about">About Me</a></li><li><a class="selected" href="/posts">Posts</a></li><li><a href="/publications">Publications</a></li><li><a href="/assets/résumé.pdf">Résumé</a></li><li><a href="https://navanchauhan.github.io/repo">Repo</a></li><li><a href="/feed.rss">RSS</a></li></ul></nav></div></header><div class="wrapper"><article><div class="content"><span class="reading-time">2 minute read</span><span class="reading-time">Created on July 1, 2020</span><span class="reading-time">Last modified on September 15, 2020</span><h1>Installing RDKit on Google Colab</h1><p>RDKit is one of the most integral part of any Cheminfomatic specialist's toolkit but it is notoriously difficult to install unless you already have <code>conda</code> installed. I originally found this in a GitHub Gist but I have not been able to find that gist again :/</p><p>Just copy and paste this in a Colab cell and it will install it 👍</p><pre><code><div class="highlight"><span></span><span class="kn">import</span> <span class="nn">sys</span> +<!DOCTYPE html><html lang="en"><head><meta charset="UTF-8"/><meta name="og:site_name" content="Navan Chauhan"/><link rel="canonical" href="https://navanchauhan.github.io/posts/2020-07-01-Install-rdkit-colab"/><meta name="twitter:url" content="https://navanchauhan.github.io/posts/2020-07-01-Install-rdkit-colab"/><meta name="og:url" content="https://navanchauhan.github.io/posts/2020-07-01-Install-rdkit-colab"/><title>Installing RDKit on Google Colab | Navan Chauhan</title><meta name="twitter:title" content="Installing RDKit on Google Colab | Navan Chauhan"/><meta name="og:title" content="Installing RDKit on Google Colab | Navan Chauhan"/><meta name="description" content="Install RDKit on Google Colab with one code snippet."/><meta name="twitter:description" content="Install RDKit on Google Colab with one code snippet."/><meta name="og:description" content="Install RDKit on Google Colab with one code snippet."/><meta name="twitter:card" content="summary"/><link rel="stylesheet" href="/styles.css" type="text/css"/><meta name="viewport" content="width=device-width, initial-scale=1.0"/><link rel="shortcut icon" href="/images/favicon.png" type="image/png"/><link rel="alternate" href="/feed.rss" type="application/rss+xml" title="Subscribe to Navan Chauhan"/><meta name="twitter:image" content="https://navanchauhan.github.io/images/logo.png"/><meta name="og:image" content="https://navanchauhan.github.io/images/logo.png"/></head><head><script async src="//gc.zgo.at/count.js" data-goatcounter="https://navanchauhan.goatcounter.com/count"></script></head><body class="item-page"><header><div class="wrapper"><a class="site-name" href="/">Navan Chauhan</a><nav><ul><li><a href="/about">About Me</a></li><li><a class="selected" href="/posts">Posts</a></li><li><a href="/publications">Publications</a></li><li><a href="/assets/résumé.pdf">Résumé</a></li><li><a href="https://navanchauhan.github.io/repo">Repo</a></li><li><a href="/feed.rss">RSS Feed</a></li></ul></nav></div></header><div class="wrapper"><article><div class="content"><span class="reading-time">2 minute read</span><span class="reading-time">Created on July 1, 2020</span><span class="reading-time">Last modified on September 15, 2020</span><h1>Installing RDKit on Google Colab</h1><p>RDKit is one of the most integral part of any Cheminfomatic specialist's toolkit but it is notoriously difficult to install unless you already have <code>conda</code> installed. I originally found this in a GitHub Gist but I have not been able to find that gist again :/</p><p>Just copy and paste this in a Colab cell and it will install it 👍</p><pre><code><div class="highlight"><span></span><span class="kn">import</span> <span class="nn">sys</span> <span class="kn">import</span> <span class="nn">os</span> <span class="kn">import</span> <span class="nn">requests</span> <span class="kn">import</span> <span class="nn">subprocess</span> |