From 13a4f4238adeee4ff3f7233ff82a8058ca2ffcb3 Mon Sep 17 00:00:00 2001
From: Navan Chauhan <navanchauhan@gmail.com>
Date: Tue, 15 Sep 2020 15:40:52 +0530
Subject: Publish deploy 2020-09-15 15:40

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@@ -1,4 +1,4 @@
-<?xml version="1.0" encoding="UTF-8"?><rss version="2.0" xmlns:atom="http://www.w3.org/2005/Atom" xmlns:content="http://purl.org/rss/1.0/modules/content"><channel><title>Navan Chauhan</title><description>Welcome to my personal fragment of the internet. Majority of the posts should be complete.</description><link>https://navanchauhan.github.io/</link><language>en</language><lastBuildDate>Sat, 1 Aug 2020 17:00:53 +0530</lastBuildDate><pubDate>Sat, 1 Aug 2020 17:00:53 +0530</pubDate><ttl>250</ttl><atom:link href="https://navanchauhan.github.io/feed.rss" rel="self" type="application/rss+xml"/><item><guid isPermaLink="true">https://navanchauhan.github.io/posts/2020-08-01-Natural-Feature-Tracking-ARJS</guid><title>Introduction to AR.js and Natural Feature Tracking</title><description>An introduction to AR.js and NFT</description><link>https://navanchauhan.github.io/posts/2020-08-01-Natural-Feature-Tracking-ARJS</link><pubDate>Sat, 1 Aug 2020 15:43:00 +0530</pubDate><content:encoded><![CDATA[<h1>Introduction to AR.js and Natural Feature Tracking</h1><h2>AR.js</h2><p>AR.js is a lightweight library for Augmented Reality on the Web, coming with features like Image Tracking, Location based AR and Marker tracking. It is the easiest option for cross-browser augmented reality.</p><p>The same code works for iOS, Android, Desktops and even VR Browsers!</p><p>It weas initially created by Jerome Etienne and is now maintained by Nicolo Carpignoli and the AR-js Organisation</p><h2>NFT</h2><p>Usually for augmented reality you need specialised markers, like this Hiro marker (notice the thick non-aesthetic borders 🤢)</p><img src="https://upload.wikimedia.org/wikipedia/commons/4/48/Hiro_marker_ARjs.png"/><p>This is called marker based tracking where the code knows what to look for. NFT or Natural Feature Tracing converts normal images into markers by extracting 'features' from it, this way you can use any image of your liking!</p><p>I'll be using my GitHub profile picture</p><img src="https://navanchauhan.github.io//images/me.jpeg"/><h2>Creating the Marker!</h2><p>First we need to create the marker files required by AR.js for NFT. For this we use Carnaux's repository 'NFT-Marker-Creator'.</p><pre><code><div class="highlight"><span></span>$ git clone https://github.com/Carnaux/NFT-Marker-Creator
+<?xml version="1.0" encoding="UTF-8"?><rss version="2.0" xmlns:atom="http://www.w3.org/2005/Atom" xmlns:content="http://purl.org/rss/1.0/modules/content"><channel><title>Navan Chauhan</title><description>Welcome to my personal fragment of the internet. Majority of the posts should be complete.</description><link>https://navanchauhan.github.io/</link><language>en</language><lastBuildDate>Tue, 15 Sep 2020 15:40:39 +0530</lastBuildDate><pubDate>Tue, 15 Sep 2020 15:40:39 +0530</pubDate><ttl>250</ttl><atom:link href="https://navanchauhan.github.io/feed.rss" rel="self" type="application/rss+xml"/><item><guid isPermaLink="true">https://navanchauhan.github.io/posts/2020-08-01-Natural-Feature-Tracking-ARJS</guid><title>Introduction to AR.js and Natural Feature Tracking</title><description>An introduction to AR.js and NFT</description><link>https://navanchauhan.github.io/posts/2020-08-01-Natural-Feature-Tracking-ARJS</link><pubDate>Sat, 1 Aug 2020 15:43:00 +0530</pubDate><content:encoded><![CDATA[<h1>Introduction to AR.js and Natural Feature Tracking</h1><h2>AR.js</h2><p>AR.js is a lightweight library for Augmented Reality on the Web, coming with features like Image Tracking, Location based AR and Marker tracking. It is the easiest option for cross-browser augmented reality.</p><p>The same code works for iOS, Android, Desktops and even VR Browsers!</p><p>It weas initially created by Jerome Etienne and is now maintained by Nicolo Carpignoli and the AR-js Organisation</p><h2>NFT</h2><p>Usually for augmented reality you need specialised markers, like this Hiro marker (notice the thick non-aesthetic borders 🤢)</p><img src="https://upload.wikimedia.org/wikipedia/commons/4/48/Hiro_marker_ARjs.png"/><p>This is called marker based tracking where the code knows what to look for. NFT or Natural Feature Tracing converts normal images into markers by extracting 'features' from it, this way you can use any image of your liking!</p><p>I'll be using my GitHub profile picture</p><img src="https://navanchauhan.github.io//images/me.jpeg"/><h2>Creating the Marker!</h2><p>First we need to create the marker files required by AR.js for NFT. For this we use Carnaux's repository 'NFT-Marker-Creator'.</p><pre><code><div class="highlight"><span></span>$ git clone https://github.com/Carnaux/NFT-Marker-Creator
 
 Cloning into <span class="s1">&#39;NFT-Marker-Creator&#39;</span>...
 remote: Enumerating objects: <span class="m">79</span>, <span class="k">done</span>.
@@ -425,9 +425,9 @@ Serving HTTP on <span class="m">0</span>.0.0.0 port <span class="m">8000</span>
         <span class="p">&lt;</span><span class="nt">a-torus-knot</span> <span class="na">radius</span><span class="o">=</span><span class="s">&#39;0.26&#39;</span> <span class="na">radius-tubular</span><span class="o">=</span><span class="s">&#39;0.05&#39;</span> <span class="p">&gt;&lt;/</span><span class="nt">a-torus-knot</span><span class="p">&gt;</span>
     <span class="p">&lt;/</span> <span class="nt">a-box</span><span class="p">&gt;</span>
 <span class="p">&lt;/</span> <span class="nt">a-nft</span><span class="p">&gt;</span>
-</div></code></pre><img src="https://navanchauhan.github.io//assets/posts/arjs/03-knot.png"/><h2>Where are the GIFs?</h2><p>Now that we know how to place a box in the scene and add a torus knot in it, what do we do next? We bring the classic internet back!</p><p><code>AFrame GIF Shader</code> is a gif shader for A-Frame created by mayognaise.</p><h3>First things first</h3><p>Add <code>&lt;script src="https://rawgit.com/mayognaise/aframe-gif-shader/master/dist/aframe-gif-shader.min.js"&gt;&lt;/script&gt; </code> to <code>&lt;head&gt;</code></p><h3>🎦</h3><p>Change the box's material to add the GIF shader</p><pre><code><div class="highlight"><span></span>...
+</div></code></pre><img src="https://navanchauhan.github.io//assets/posts/arjs/03-knot.png"/><h2>Where are the GIFs?</h2><p>Now that we know how to place a box in the scene and add a torus knot in it, what do we do next? We bring the classic internet back!</p><p><code>AFrame GIF Shader</code> is a gif shader for A-Frame created by mayognaise.</p><h3>First things first</h3><p>Add <code>&lt;script src="https://rawgit.com/mayognaise/aframe-gif-shader/master/dist/aframe-gif-shader.min.js"&gt;&lt;/script&gt; </code> to <code>&lt;head&gt;</code></p><p>Change the box's material to add the GIF shader</p><pre><code><div class="highlight"><span></span>...
 <span class="p">&lt;</span><span class="nt">a-box</span> <span class="na">position</span><span class="o">=</span><span class="s">&#39;100 0.5 -180&#39;</span> <span class="na">material</span><span class="o">=</span><span class="s">&quot;shader:gif;src:url(https://media.tenor.com/images/412b1aa9149d98d561df62db221e0789/tenor.gif);opacity:.5&quot;</span> <span class="err">.....</span><span class="p">&gt;</span>
-</div></code></pre><img src="https://navanchauhan.github.io//assets/posts/arjs/04-nyan.gif"/><h2>Bonus Idea: Integrate it with GitHub's new profile Readme Feature!</h2><h3>1) Host the code using GitHub Pages</h3><h3>2) Create a new repository ( the name should be your GitHub username )</h3><h3>3) Add QR Code to the page and tell the users to scan your profile picture</h3><h3>Profit 💸</h3><p>Here is a demo of me scanning a rounded version of my profile picture ( It still works! Even though the image is cropped and I haven't changed any line of code )</p><img src="https://navanchauhan.github.io//assets/posts/arjs/05-GitHub.jpg"/>]]></content:encoded></item><item><guid isPermaLink="true">https://navanchauhan.github.io/posts/2020-07-01-Install-rdkit-colab</guid><title></title><description>Install RDKit on Google Colab with one code snippet.</description><link>https://navanchauhan.github.io/posts/2020-07-01-Install-rdkit-colab</link><pubDate>Wed, 1 Jul 2020 14:23:00 +0530</pubDate><content:encoded><![CDATA[<p>RDKit is one of the most integral part of any Cheminfomatic specialist's toolkit but it is notoriously difficult to install unless you already have <code>conda</code> installed. I originally found this in a GitHub Gist but I have not been able to found that gist again :/</p><p>Just copy and paste this in a Colab cell and it will install it 👍</p><pre><code><div class="highlight"><span></span><span class="kn">import</span> <span class="nn">sys</span>
+</div></code></pre><img src="https://navanchauhan.github.io//assets/posts/arjs/04-nyan.gif"/><h2>Bonus Idea: Integrate it with GitHub's new profile Readme Feature!</h2><h3>1) Host the code using GitHub Pages</h3><h3>2) Create a new repository ( the name should be your GitHub username )</h3><h3>3) Add QR Code to the page and tell the users to scan your profile picture</h3><h3>??) Profit 💸</h3><p>Here is a screenshot of me scanning a rounded version of my profile picture ( It still works! Even though the image is cropped and I haven't changed any line of code )</p><img src="https://navanchauhan.github.io//assets/posts/arjs/05-GitHub.jpg"/>]]></content:encoded></item><item><guid isPermaLink="true">https://navanchauhan.github.io/posts/2020-07-01-Install-rdkit-colab</guid><title>Installing RDKit on Google Colab</title><description>Install RDKit on Google Colab with one code snippet.</description><link>https://navanchauhan.github.io/posts/2020-07-01-Install-rdkit-colab</link><pubDate>Wed, 1 Jul 2020 14:23:00 +0530</pubDate><content:encoded><![CDATA[<h1>Installing RDKit on Google Colab</h1><p>RDKit is one of the most integral part of any Cheminfomatic specialist's toolkit but it is notoriously difficult to install unless you already have <code>conda</code> installed. I originally found this in a GitHub Gist but I have not been able to find that gist again :/</p><p>Just copy and paste this in a Colab cell and it will install it 👍</p><pre><code><div class="highlight"><span></span><span class="kn">import</span> <span class="nn">sys</span>
 <span class="kn">import</span> <span class="nn">os</span>
 <span class="kn">import</span> <span class="nn">requests</span>
 <span class="kn">import</span> <span class="nn">subprocess</span>
diff --git a/posts/2020-07-01-Install-rdkit-colab/index.html b/posts/2020-07-01-Install-rdkit-colab/index.html
index 8d695dd..35408ce 100644
--- a/posts/2020-07-01-Install-rdkit-colab/index.html
+++ b/posts/2020-07-01-Install-rdkit-colab/index.html
@@ -1,4 +1,4 @@
-<!DOCTYPE html><html lang="en"><head><meta charset="UTF-8"/><meta name="og:site_name" content="Navan Chauhan"/><link rel="canonical" href="https://navanchauhan.github.io/posts/2020-07-01-Install-rdkit-colab"/><meta name="twitter:url" content="https://navanchauhan.github.io/posts/2020-07-01-Install-rdkit-colab"/><meta name="og:url" content="https://navanchauhan.github.io/posts/2020-07-01-Install-rdkit-colab"/><title>Installing RDKit on Google Colab | Navan Chauhan</title><meta name="twitter:title" content="Installing RDKit on Google Colab | Navan Chauhan"/><meta name="og:title" content="Installing RDKit on Google Colab | Navan Chauhan"/><meta name="description" content="Install RDKit on Google Colab with one code snippet."/><meta name="twitter:description" content="Install RDKit on Google Colab with one code snippet."/><meta name="og:description" content="Install RDKit on Google Colab with one code snippet."/><meta name="twitter:card" content="summary"/><link rel="stylesheet" href="/styles.css" type="text/css"/><meta name="viewport" content="width=device-width, initial-scale=1.0"/><link rel="shortcut icon" href="/images/favicon.png" type="image/png"/><link rel="alternate" href="/feed.rss" type="application/rss+xml" title="Subscribe to Navan Chauhan"/><meta name="twitter:image" content="https://navanchauhan.github.io/images/logo.png"/><meta name="og:image" content="https://navanchauhan.github.io/images/logo.png"/></head><head><script>var _paq=window._paq=window._paq||[];_paq.push(['trackPageView']),_paq.push(['enableLinkTracking']),function(){var a='https://navanspi.duckdns.org:6969/analytics/';_paq.push(['setTrackerUrl',a+'matomo.php']),_paq.push(['setSiteId','2']);var e=document,t=e.createElement('script'),p=e.getElementsByTagName('script')[0];t.type='text/javascript',t.async=!0,t.src=a+'matomo.js',p.parentNode.insertBefore(t,p)}();</script></head><head><script src="https://www.googletagmanager.com/gtag/js?id=UA-108635191-1v"></script><script>window.dataLayer = window.dataLayer || [];function gtag(){dataLayer.push(arguments);}gtag('js', new Date());gtag('config', 'UA-108635191-1');</script></head><body class="item-page"><header><div class="wrapper"><a class="site-name" href="/">Navan Chauhan</a><nav><ul><li><a href="/about">About Me</a></li><li><a class="selected" href="/posts">Posts</a></li><li><a href="/publications">Publications</a></li><li><a href="/assets/résumé.pdf">Résumé</a></li><li><a href="https://navanchauhan.github.io/repo">Repo</a></li></ul></nav></div></header><div class="wrapper"><article><div class="content"><span class="reading-time">2 minute read</span><span class="reading-time">Created on July 1, 2020</span><span class="reading-time">Last modified on August 1, 2020</span><h1>Installing RDKit on Google Colab</h1><p>RDKit is one of the most integral part of any Cheminfomatic specialist's toolkit but it is notoriously difficult to install unless you already have <code>conda</code> installed. I originally found this in a GitHub Gist but I have not been able to found that gist again :/</p><p>Just copy and paste this in a Colab cell and it will install it 👍</p><pre><code><div class="highlight"><span></span><span class="kn">import</span> <span class="nn">sys</span>
+<!DOCTYPE html><html lang="en"><head><meta charset="UTF-8"/><meta name="og:site_name" content="Navan Chauhan"/><link rel="canonical" href="https://navanchauhan.github.io/posts/2020-07-01-Install-rdkit-colab"/><meta name="twitter:url" content="https://navanchauhan.github.io/posts/2020-07-01-Install-rdkit-colab"/><meta name="og:url" content="https://navanchauhan.github.io/posts/2020-07-01-Install-rdkit-colab"/><title>Installing RDKit on Google Colab | Navan Chauhan</title><meta name="twitter:title" content="Installing RDKit on Google Colab | Navan Chauhan"/><meta name="og:title" content="Installing RDKit on Google Colab | Navan Chauhan"/><meta name="description" content="Install RDKit on Google Colab with one code snippet."/><meta name="twitter:description" content="Install RDKit on Google Colab with one code snippet."/><meta name="og:description" content="Install RDKit on Google Colab with one code snippet."/><meta name="twitter:card" content="summary"/><link rel="stylesheet" href="/styles.css" type="text/css"/><meta name="viewport" content="width=device-width, initial-scale=1.0"/><link rel="shortcut icon" href="/images/favicon.png" type="image/png"/><link rel="alternate" href="/feed.rss" type="application/rss+xml" title="Subscribe to Navan Chauhan"/><meta name="twitter:image" content="https://navanchauhan.github.io/images/logo.png"/><meta name="og:image" content="https://navanchauhan.github.io/images/logo.png"/></head><head><script>var _paq=window._paq=window._paq||[];_paq.push(['trackPageView']),_paq.push(['enableLinkTracking']),function(){var a='https://navanspi.duckdns.org:6969/analytics/';_paq.push(['setTrackerUrl',a+'matomo.php']),_paq.push(['setSiteId','2']);var e=document,t=e.createElement('script'),p=e.getElementsByTagName('script')[0];t.type='text/javascript',t.async=!0,t.src=a+'matomo.js',p.parentNode.insertBefore(t,p)}();</script></head><head><script src="https://www.googletagmanager.com/gtag/js?id=UA-108635191-1v"></script><script>window.dataLayer = window.dataLayer || [];function gtag(){dataLayer.push(arguments);}gtag('js', new Date());gtag('config', 'UA-108635191-1');</script></head><body class="item-page"><header><div class="wrapper"><a class="site-name" href="/">Navan Chauhan</a><nav><ul><li><a href="/about">About Me</a></li><li><a class="selected" href="/posts">Posts</a></li><li><a href="/publications">Publications</a></li><li><a href="/assets/résumé.pdf">Résumé</a></li><li><a href="https://navanchauhan.github.io/repo">Repo</a></li></ul></nav></div></header><div class="wrapper"><article><div class="content"><span class="reading-time">2 minute read</span><span class="reading-time">Created on July 1, 2020</span><span class="reading-time">Last modified on September 15, 2020</span><h1>Installing RDKit on Google Colab</h1><p>RDKit is one of the most integral part of any Cheminfomatic specialist's toolkit but it is notoriously difficult to install unless you already have <code>conda</code> installed. I originally found this in a GitHub Gist but I have not been able to find that gist again :/</p><p>Just copy and paste this in a Colab cell and it will install it 👍</p><pre><code><div class="highlight"><span></span><span class="kn">import</span> <span class="nn">sys</span>
 <span class="kn">import</span> <span class="nn">os</span>
 <span class="kn">import</span> <span class="nn">requests</span>
 <span class="kn">import</span> <span class="nn">subprocess</span>
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