<!DOCTYPE html> <html lang="en"> <head> <link rel="stylesheet" href="/assets/main.css" /> <link rel="stylesheet" href="/assets/sakura.css" /> <meta charset="utf-8"> <meta name="viewport" content="width=device-width, initial-scale=1.0"> <title>Hey - Post - Compiling AutoDock Vina on iOS</title> <meta name="og:site_name" content="Navan Chauhan" /> <link rel="canonical" href="https://web.navan.dev/" /> <meta name="twitter:url" content="https://web.navan.dev/" /> <meta name="og:url" content="https://web.navan.dev/" /> <meta name="twitter:title" content="Hey - Post - Compiling AutoDock Vina on iOS" /> <meta name="og:title" content="Hey - Post - Compiling AutoDock Vina on iOS" /> <meta name="description" content=" Compiling AutoDock Vina on iOS " /> <meta name="twitter:description" content=" Compiling AutoDock Vina on iOS " /> <meta name="og:description" content=" Compiling AutoDock Vina on iOS " /> <meta name="twitter:card" content=" Compiling AutoDock Vina on iOS " /> <meta name="viewport" content="width=device-width, initial-scale=1.0" /> <link rel="shortcut icon" href="/images/favicon.png" type="image/png" /> <link rel="alternate" href="/feed.rss" type="application/rss+xml" title="Subscribe to Navan Chauhan" /> <meta name="twitter:image" content="https://web.navan.dev/images/logo.png" /> <meta name="og:image" content="https://web.navan.dev/images/logo.png" /> <link rel="manifest" href="manifest.json" /> <meta name="google-site-verification" content="LVeSZxz-QskhbEjHxOi7-BM5dDxTg53x2TwrjFxfL0k" /> <script async src="//gc.zgo.at/count.js" data-goatcounter="https://navanchauhan.goatcounter.com/count"></script> <script defer data-domain="web.navan.dev" src="https://plausible.io/js/plausible.js"></script> <script defer data-domain="web.navan.dev" src="https://plausible.navan.dev/js/plausible.js"></script> </head> <body> <nav style="display: block;"> | <a href="/">home</a> | <a href="/about/">about/links</a> | <a href="/posts/">posts</a> | <a href="/publications/">publications</a> | <a href="/repo/">iOS repo</a> | <a href="/feed.rss">RSS Feed</a> | </nav> <main> <h1>Compiling AutoDock Vina on iOS</h1> <p>Why? Because I can.</p> <h2>Installing makedepend</h2> <p><code>makedepend</code> is a Unix tool used to generate dependencies of C source files. Most modern programs do not use this anymore, but then again AutoDock Vina's source code hasn't been changed since 2011. The first hurdle came when I saw that there was no makedepend command, neither was there any package on any development repository for iOS. So, I tracked down the original source code for <code>makedepend</code> (https://github.com/DerellLicht/makedepend). According to the repository this is actually the source code for the makedepend utility that came with some XWindows distribution back around Y2K. I am pretty sure there is a problem with my current compiler configuration because I had to manually edit the <code>Makefile</code> to provide the path to the iOS SDKs using the <code>-isysroot</code> flag.</p> <h2>Editing the Makefile</h2> <p>Original Makefile ( I used the provided mac Makefile base )</p> <pre><code>BASE=/usr/local BOOST_VERSION=1_41 BOOST_INCLUDE = $(BASE)/include C_PLATFORM=-arch i386 -arch ppc -isysroot /Developer/SDKs/MacOSX10.5.sdk -mmacosx-version-min=10.4 GPP=/usr/bin/g++ C_OPTIONS= -O3 -DNDEBUG BOOST_LIB_VERSION= include ../../makefile_common </code></pre> <p>I installed Boost 1.68.0-1 from Sam Bingner's repository. ( Otherwise I would have had to compile boost too 😫 )</p> <p>Edited Makefile</p> <pre><code>BASE=/usr BOOST_VERSION=1_68 BOOST_INCLUDE = $(BASE)/include C_PLATFORM=-arch arm64 -isysroot /var/sdks/Latest.sdk GPP=/usr/bin/g++ C_OPTIONS= -O3 -DNDEBUG BOOST_LIB_VERSION= include ../../makefile_common </code></pre> <h2>Updating the Source Code</h2> <p>Of course since Boost 1.41 many things have been added and deprecated, that is why I had to edit the source code to make it work with version 1.68</p> <h3>Error 1 - No Matching Constructor</h3> <pre><code>../../../src/main/main.cpp:50:9: error: no matching constructor for initialization of 'path' (aka 'boost::filesystem::path') return path(str, boost::filesystem::native); </code></pre> <p>This was an easy fix, I just commented this and added a return statement to return the path</p> <pre><code>return path(str) </code></pre> <h3>Error 2 - No Member Named 'native<em>file</em>string'</h3> <pre><code>../../../src/main/main.cpp:665:57: error: no member named 'native_file_string' in 'boost::filesystem::path' std::cerr << "\n\nError: could not open \"" << e.name.native_file_string() << "\" for " << (e.in ? "reading" : "writing") << ".\n"; ~~~~~~ ^ ../../../src/main/main.cpp:677:80: error: no member named 'native_file_string' in 'boost::filesystem::path' std::cerr << "\n\nParse error on line " << e.line << " in file \"" << e.file.native_file_string() << "\": " << e.reason << '\n'; ~~~~~~ ^ 2 errors generated. </code></pre> <p>Turns out <code>native_file_string</code> was deprecated in Boost 1.57 and replaced with just <code>string</code></p> <h3>Error 3 - Library Not Found</h3> <p>This one still boggles me because there was no reason for it to not work, as a workaround I downloaded the DEB, extracted it and used that path for compiling.</p> <h3>Error 4 - No Member Named 'native<em>file</em>string' Again.</h3> <p>But, this time in another file and I quickly fixed it</p> <h2>Moment of Truth</h2> <p>Obviously it was working on my iPad, but would it work on another device? I transferred the compiled binary and </p> <p><img src="/assets/posts/autodock-vina/s1.png" alt=""AutoDock Vina running on my iPhone"" /></p> <p>The package is available on my repository and only depends on boost. ( Both, Vina and Vina-Split are part of the package)</p> <div class="commentbox"></div> <script src="https://unpkg.com/commentbox.io/dist/commentBox.min.js"></script> <script>commentBox('5650347917836288-proj')</script> </main> <script src="assets/manup.min.js"></script> <script src="/pwabuilder-sw-register.js"></script> </body> </html>