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authorNavan Chauhan <navanchauhan@gmail.com>2019-11-05 11:43:33 +0900
committerNavan Chauhan <navanchauhan@gmail.com>2019-11-05 11:43:33 +0900
commit73886f8b8e18fd44a57d8c34118445744574a9c3 (patch)
tree2be8c998ff2dc62c7627ea7a1d272800be14686b /notebooks
parentf10a9a0d1b2e30059020f6964f56ffe86ea9ce7d (diff)
Created using Colaboratory
Diffstat (limited to 'notebooks')
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+{
+ "nbformat": 4,
+ "nbformat_minor": 0,
+ "metadata": {
+ "colab": {
+ "name": "Turicreate - Obejct Detection - Malaria - 02.ipynb",
+ "provenance": [],
+ "collapsed_sections": [],
+ "include_colab_link": true
+ },
+ "kernelspec": {
+ "name": "python3",
+ "display_name": "Python 3"
+ },
+ "accelerator": "GPU"
+ },
+ "cells": [
+ {
+ "cell_type": "markdown",
+ "metadata": {
+ "id": "view-in-github",
+ "colab_type": "text"
+ },
+ "source": [
+ "<a href=\"https://colab.research.google.com/github/navanchauhan/Malaria-Detection/blob/master/notebooks/Turicreate_Obejct_Detection_Malaria_02.ipynb\" target=\"_parent\"><img src=\"https://colab.research.google.com/assets/colab-badge.svg\" alt=\"Open In Colab\"/></a>"
+ ]
+ },
+ {
+ "cell_type": "markdown",
+ "metadata": {
+ "id": "uObyj04Ma_yK",
+ "colab_type": "text"
+ },
+ "source": [
+ "# Object Detection for Malaria using Turicreate"
+ ]
+ },
+ {
+ "cell_type": "markdown",
+ "metadata": {
+ "id": "EexmbgqLbPZy",
+ "colab_type": "text"
+ },
+ "source": [
+ "### 1) Mount Google Drive\n",
+ "\n",
+ "The trained model is thus directly copied to your google drive"
+ ]
+ },
+ {
+ "cell_type": "code",
+ "metadata": {
+ "id": "9dM_OI1La9Jf",
+ "colab_type": "code",
+ "outputId": "44f04eac-f470-4546-8e8d-c98dcb06a279",
+ "colab": {
+ "base_uri": "https://localhost:8080/",
+ "height": 127
+ }
+ },
+ "source": [
+ "from google.colab import drive\n",
+ "\n",
+ "drive.mount('/content/gdrive')"
+ ],
+ "execution_count": 0,
+ "outputs": [
+ {
+ "output_type": "stream",
+ "text": [
+ "Go to this URL in a browser: https://accounts.google.com/o/oauth2/auth?client_id=947318989803-6bn6qk8qdgf4n4g3pfee6491hc0brc4i.apps.googleusercontent.com&redirect_uri=urn%3Aietf%3Awg%3Aoauth%3A2.0%3Aoob&scope=email%20https%3A%2F%2Fwww.googleapis.com%2Fauth%2Fdocs.test%20https%3A%2F%2Fwww.googleapis.com%2Fauth%2Fdrive%20https%3A%2F%2Fwww.googleapis.com%2Fauth%2Fdrive.photos.readonly%20https%3A%2F%2Fwww.googleapis.com%2Fauth%2Fpeopleapi.readonly&response_type=code\n",
+ "\n",
+ "Enter your authorization code:\n",
+ "··········\n",
+ "Mounted at /content/gdrive\n"
+ ],
+ "name": "stdout"
+ }
+ ]
+ },
+ {
+ "cell_type": "markdown",
+ "metadata": {
+ "id": "8FPZWglobXOn",
+ "colab_type": "text"
+ },
+ "source": [
+ "### 2) Install Dependencies\n",
+ "\n",
+ "To train the model on the Colab GPU we need to install the custom version of mxnet\n",
+ "\n",
+ "\n",
+ "##### Make sure you have selected GPU in the runtype settings"
+ ]
+ },
+ {
+ "cell_type": "code",
+ "metadata": {
+ "id": "Sch_tPbJKZ9b",
+ "colab_type": "code",
+ "outputId": "948c81b5-b683-4b5e-96f0-e13215e6f90e",
+ "colab": {
+ "base_uri": "https://localhost:8080/",
+ "height": 1000
+ }
+ },
+ "source": [
+ "!pip install turicreate\n",
+ "!pip uninstall -y mxnet\n",
+ "!pip install mxnet-cu100==1.4.0.post0"
+ ],
+ "execution_count": 0,
+ "outputs": [
+ {
+ "output_type": "stream",
+ "text": [
+ "Collecting turicreate\n",
+ "\u001b[?25l Downloading https://files.pythonhosted.org/packages/05/bf/d1c74d5002be47db24b13adde42e5898b1ff63cae31e582ddd908006ae37/turicreate-5.8-cp36-cp36m-manylinux1_x86_64.whl (90.7MB)\n",
+ "\u001b[K |████████████████████████████████| 90.7MB 116kB/s \n",
+ "\u001b[?25hRequirement already satisfied: prettytable==0.7.2 in /usr/local/lib/python3.6/dist-packages (from turicreate) (0.7.2)\n",
+ "Requirement already satisfied: six>=1.10.0 in /usr/local/lib/python3.6/dist-packages (from turicreate) (1.12.0)\n",
+ "Collecting mxnet<1.2.0,>=1.1.0\n",
+ "\u001b[?25l Downloading https://files.pythonhosted.org/packages/96/98/c9877e100c3d1ac92263bfaba7bb8a49294e099046592040a2ff8620ac61/mxnet-1.1.0.post0-py2.py3-none-manylinux1_x86_64.whl (23.8MB)\n",
+ "\u001b[K |████████████████████████████████| 23.8MB 168kB/s \n",
+ "\u001b[?25hCollecting pillow>=5.2.0\n",
+ "\u001b[?25l Downloading https://files.pythonhosted.org/packages/10/5c/0e94e689de2476c4c5e644a3bd223a1c1b9e2bdb7c510191750be74fa786/Pillow-6.2.1-cp36-cp36m-manylinux1_x86_64.whl (2.1MB)\n",
+ "\u001b[K |████████████████████████████████| 2.1MB 54.3MB/s \n",
+ "\u001b[?25hRequirement already satisfied: requests>=2.9.1 in /usr/local/lib/python3.6/dist-packages (from turicreate) (2.21.0)\n",
+ "Collecting resampy==0.2.1\n",
+ "\u001b[?25l Downloading https://files.pythonhosted.org/packages/14/b6/66a06d85474190b50aee1a6c09cdc95bb405ac47338b27e9b21409da1760/resampy-0.2.1.tar.gz (322kB)\n",
+ "\u001b[K |████████████████████████████████| 327kB 66.5MB/s \n",
+ "\u001b[?25hRequirement already satisfied: decorator>=4.0.9 in /usr/local/lib/python3.6/dist-packages (from turicreate) (4.4.1)\n",
+ "Requirement already satisfied: scipy>=1.1.0 in /usr/local/lib/python3.6/dist-packages (from turicreate) (1.3.1)\n",
+ "Collecting coremltools==3.0b3\n",
+ "\u001b[?25l Downloading https://files.pythonhosted.org/packages/b8/89/b69e3d446dbfe5632a8f24be0c7d03b19bcc6c0a0bd3d84c83c6680bb602/coremltools-3.0b3-cp36-none-manylinux1_x86_64.whl (3.4MB)\n",
+ "\u001b[K |████████████████████████████████| 3.4MB 54.7MB/s \n",
+ "\u001b[?25hRequirement already satisfied: pandas>=0.23.2 in /usr/local/lib/python3.6/dist-packages (from turicreate) (0.25.2)\n",
+ "Collecting numpy==1.16.4\n",
+ "\u001b[?25l Downloading https://files.pythonhosted.org/packages/87/2d/e4656149cbadd3a8a0369fcd1a9c7d61cc7b87b3903b85389c70c989a696/numpy-1.16.4-cp36-cp36m-manylinux1_x86_64.whl (17.3MB)\n",
+ "\u001b[K |████████████████████████████████| 17.3MB 214kB/s \n",
+ "\u001b[?25hCollecting graphviz<0.9.0,>=0.8.1\n",
+ " Downloading https://files.pythonhosted.org/packages/53/39/4ab213673844e0c004bed8a0781a0721a3f6bb23eb8854ee75c236428892/graphviz-0.8.4-py2.py3-none-any.whl\n",
+ "Requirement already satisfied: idna<2.9,>=2.5 in /usr/local/lib/python3.6/dist-packages (from requests>=2.9.1->turicreate) (2.8)\n",
+ "Requirement already satisfied: urllib3<1.25,>=1.21.1 in /usr/local/lib/python3.6/dist-packages (from requests>=2.9.1->turicreate) (1.24.3)\n",
+ "Requirement already satisfied: chardet<3.1.0,>=3.0.2 in /usr/local/lib/python3.6/dist-packages (from requests>=2.9.1->turicreate) (3.0.4)\n",
+ "Requirement already satisfied: certifi>=2017.4.17 in /usr/local/lib/python3.6/dist-packages (from requests>=2.9.1->turicreate) (2019.9.11)\n",
+ "Requirement already satisfied: numba>=0.32 in /usr/local/lib/python3.6/dist-packages (from resampy==0.2.1->turicreate) (0.40.1)\n",
+ "Requirement already satisfied: protobuf>=3.1.0 in /usr/local/lib/python3.6/dist-packages (from coremltools==3.0b3->turicreate) (3.10.0)\n",
+ "Requirement already satisfied: pytz>=2017.2 in /usr/local/lib/python3.6/dist-packages (from pandas>=0.23.2->turicreate) (2018.9)\n",
+ "Requirement already satisfied: python-dateutil>=2.6.1 in /usr/local/lib/python3.6/dist-packages (from pandas>=0.23.2->turicreate) (2.6.1)\n",
+ "Requirement already satisfied: llvmlite>=0.25.0dev0 in /usr/local/lib/python3.6/dist-packages (from numba>=0.32->resampy==0.2.1->turicreate) (0.30.0)\n",
+ "Requirement already satisfied: setuptools in /usr/local/lib/python3.6/dist-packages (from protobuf>=3.1.0->coremltools==3.0b3->turicreate) (41.4.0)\n",
+ "Building wheels for collected packages: resampy\n",
+ " Building wheel for resampy (setup.py) ... \u001b[?25l\u001b[?25hdone\n",
+ " Created wheel for resampy: filename=resampy-0.2.1-cp36-none-any.whl size=320847 sha256=8f4647fe61c0750fdbedd81f2721b7efd09d7d5246666e796c607f2cd3365562\n",
+ " Stored in directory: /root/.cache/pip/wheels/ff/4f/ed/2e6c676c23efe5394bb40ade50662e90eb46e29b48324c5f9b\n",
+ "Successfully built resampy\n",
+ "\u001b[31mERROR: datascience 0.10.6 has requirement folium==0.2.1, but you'll have folium 0.8.3 which is incompatible.\u001b[0m\n",
+ "\u001b[31mERROR: albumentations 0.1.12 has requirement imgaug<0.2.7,>=0.2.5, but you'll have imgaug 0.2.9 which is incompatible.\u001b[0m\n",
+ "\u001b[31mERROR: mxnet 1.1.0.post0 has requirement numpy<1.15.0,>=1.8.2, but you'll have numpy 1.16.4 which is incompatible.\u001b[0m\n",
+ "\u001b[31mERROR: mxnet 1.1.0.post0 has requirement requests<2.19.0,>=2.18.4, but you'll have requests 2.21.0 which is incompatible.\u001b[0m\n",
+ "Installing collected packages: graphviz, numpy, mxnet, pillow, resampy, coremltools, turicreate\n",
+ " Found existing installation: graphviz 0.10.1\n",
+ " Uninstalling graphviz-0.10.1:\n",
+ " Successfully uninstalled graphviz-0.10.1\n",
+ " Found existing installation: numpy 1.17.3\n",
+ " Uninstalling numpy-1.17.3:\n",
+ " Successfully uninstalled numpy-1.17.3\n",
+ " Found existing installation: Pillow 4.3.0\n",
+ " Uninstalling Pillow-4.3.0:\n",
+ " Successfully uninstalled Pillow-4.3.0\n",
+ " Found existing installation: resampy 0.2.2\n",
+ " Uninstalling resampy-0.2.2:\n",
+ " Successfully uninstalled resampy-0.2.2\n",
+ "Successfully installed coremltools-3.0b3 graphviz-0.8.4 mxnet-1.1.0.post0 numpy-1.16.4 pillow-6.2.1 resampy-0.2.1 turicreate-5.8\n"
+ ],
+ "name": "stdout"
+ },
+ {
+ "output_type": "display_data",
+ "data": {
+ "application/vnd.colab-display-data+json": {
+ "pip_warning": {
+ "packages": [
+ "PIL",
+ "numpy"
+ ]
+ }
+ }
+ },
+ "metadata": {
+ "tags": []
+ }
+ },
+ {
+ "output_type": "stream",
+ "text": [
+ "Uninstalling mxnet-1.1.0.post0:\n",
+ " Successfully uninstalled mxnet-1.1.0.post0\n",
+ "Collecting mxnet-cu100==1.4.0.post0\n",
+ "\u001b[?25l Downloading https://files.pythonhosted.org/packages/ae/36/40b6d201b46495513f7a7fa25fe8b7d85b3602a22efba119e8146d5f1601/mxnet_cu100-1.4.0.post0-py2.py3-none-manylinux1_x86_64.whl (487.9MB)\n",
+ "\u001b[K |████████████████████████████████| 487.9MB 32kB/s \n",
+ "\u001b[?25hCollecting numpy<1.15.0,>=1.8.2\n",
+ "\u001b[?25l Downloading https://files.pythonhosted.org/packages/e5/c4/395ebb218053ba44d64935b3729bc88241ec279915e72100c5979db10945/numpy-1.14.6-cp36-cp36m-manylinux1_x86_64.whl (13.8MB)\n",
+ "\u001b[K |████████████████████████████████| 13.8MB 27.3MB/s \n",
+ "\u001b[?25hRequirement already satisfied: graphviz<0.9.0,>=0.8.1 in /usr/local/lib/python3.6/dist-packages (from mxnet-cu100==1.4.0.post0) (0.8.4)\n",
+ "Requirement already satisfied: requests>=2.20.0 in /usr/local/lib/python3.6/dist-packages (from mxnet-cu100==1.4.0.post0) (2.21.0)\n",
+ "Requirement already satisfied: chardet<3.1.0,>=3.0.2 in /usr/local/lib/python3.6/dist-packages (from requests>=2.20.0->mxnet-cu100==1.4.0.post0) (3.0.4)\n",
+ "Requirement already satisfied: urllib3<1.25,>=1.21.1 in /usr/local/lib/python3.6/dist-packages (from requests>=2.20.0->mxnet-cu100==1.4.0.post0) (1.24.3)\n",
+ "Requirement already satisfied: certifi>=2017.4.17 in /usr/local/lib/python3.6/dist-packages (from requests>=2.20.0->mxnet-cu100==1.4.0.post0) (2019.9.11)\n",
+ "Requirement already satisfied: idna<2.9,>=2.5 in /usr/local/lib/python3.6/dist-packages (from requests>=2.20.0->mxnet-cu100==1.4.0.post0) (2.8)\n",
+ "\u001b[31mERROR: turicreate 5.8 requires mxnet<1.2.0,>=1.1.0, which is not installed.\u001b[0m\n",
+ "\u001b[31mERROR: turicreate 5.8 has requirement numpy==1.16.4, but you'll have numpy 1.14.6 which is incompatible.\u001b[0m\n",
+ "\u001b[31mERROR: tensorflow 1.15.0 has requirement numpy<2.0,>=1.16.0, but you'll have numpy 1.14.6 which is incompatible.\u001b[0m\n",
+ "\u001b[31mERROR: spacy 2.1.9 has requirement numpy>=1.15.0, but you'll have numpy 1.14.6 which is incompatible.\u001b[0m\n",
+ "\u001b[31mERROR: imgaug 0.2.9 has requirement numpy>=1.15.0, but you'll have numpy 1.14.6 which is incompatible.\u001b[0m\n",
+ "\u001b[31mERROR: fastai 1.0.59 has requirement numpy>=1.15, but you'll have numpy 1.14.6 which is incompatible.\u001b[0m\n",
+ "\u001b[31mERROR: datascience 0.10.6 has requirement folium==0.2.1, but you'll have folium 0.8.3 which is incompatible.\u001b[0m\n",
+ "\u001b[31mERROR: cvxpy 1.0.25 has requirement numpy>=1.15, but you'll have numpy 1.14.6 which is incompatible.\u001b[0m\n",
+ "\u001b[31mERROR: blis 0.2.4 has requirement numpy>=1.15.0, but you'll have numpy 1.14.6 which is incompatible.\u001b[0m\n",
+ "\u001b[31mERROR: albumentations 0.1.12 has requirement imgaug<0.2.7,>=0.2.5, but you'll have imgaug 0.2.9 which is incompatible.\u001b[0m\n",
+ "Installing collected packages: numpy, mxnet-cu100\n",
+ " Found existing installation: numpy 1.16.4\n",
+ " Uninstalling numpy-1.16.4:\n",
+ " Successfully uninstalled numpy-1.16.4\n",
+ "Successfully installed mxnet-cu100-1.4.0.post0 numpy-1.14.6\n"
+ ],
+ "name": "stdout"
+ },
+ {
+ "output_type": "display_data",
+ "data": {
+ "application/vnd.colab-display-data+json": {
+ "pip_warning": {
+ "packages": [
+ "numpy"
+ ]
+ }
+ }
+ },
+ "metadata": {
+ "tags": []
+ }
+ }
+ ]
+ },
+ {
+ "cell_type": "markdown",
+ "metadata": {
+ "id": "69zbhy-zdip0",
+ "colab_type": "text"
+ },
+ "source": [
+ "Now restart the runtime."
+ ]
+ },
+ {
+ "cell_type": "markdown",
+ "metadata": {
+ "id": "XIAuyza3drzJ",
+ "colab_type": "text"
+ },
+ "source": [
+ "### 3) Fetch the dataset"
+ ]
+ },
+ {
+ "cell_type": "code",
+ "metadata": {
+ "id": "0SUgEVilK-t5",
+ "colab_type": "code",
+ "outputId": "aa26c154-3027-4fd9-829a-c3e6499574cf",
+ "colab": {
+ "base_uri": "https://localhost:8080/",
+ "height": 1000
+ }
+ },
+ "source": [
+ "!wget http://air.ug/downloads/plasmodium-images.zip\n",
+ "!unzip plasmodium-images.zip\n",
+ "!ls images/"
+ ],
+ "execution_count": 0,
+ "outputs": [
+ {
+ "output_type": "stream",
+ "text": [
+ "--2019-11-05 00:45:29-- http://air.ug/downloads/plasmodium-images.zip\n",
+ "Resolving air.ug (air.ug)... 34.242.164.142\n",
+ "Connecting to air.ug (air.ug)|34.242.164.142|:80... connected.\n",
+ "HTTP request sent, awaiting response... 200 OK\n",
+ "Length: 148185339 (141M) [application/zip]\n",
+ "Saving to: ‘plasmodium-images.zip’\n",
+ "\n",
+ "plasmodium-images.z 100%[===================>] 141.32M 21.3MB/s in 6.7s \n",
+ "\n",
+ "2019-11-05 00:45:35 (21.0 MB/s) - ‘plasmodium-images.zip’ saved [148185339/148185339]\n",
+ "\n",
+ "Archive: plasmodium-images.zip\n",
+ " inflating: annotation/plasmodium-0000.xml \n",
+ " inflating: annotation/plasmodium-0001.xml \n",
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+ " inflating: annotation/plasmodium-0034.xml \n",
+ " inflating: annotation/plasmodium-0035.xml \n",
+ " inflating: annotation/plasmodium-0036.xml \n",
+ " inflating: annotation/plasmodium-0037.xml \n",
+ " inflating: annotation/plasmodium-0038.xml \n",
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+ "plasmodium-0772.jpg plasmodium-1673.jpg plasmodium-2574.jpg\n",
+ "plasmodium-0773.jpg plasmodium-1674.jpg plasmodium-2575.jpg\n",
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+ "plasmodium-0775.jpg plasmodium-1676.jpg plasmodium-2577.jpg\n",
+ "plasmodium-0776.jpg plasmodium-1677.jpg plasmodium-2578.jpg\n",
+ "plasmodium-0777.jpg plasmodium-1678.jpg plasmodium-2579.jpg\n",
+ "plasmodium-0778.jpg plasmodium-1679.jpg plasmodium-2580.jpg\n",
+ "plasmodium-0779.jpg plasmodium-1680.jpg plasmodium-2581.jpg\n",
+ "plasmodium-0780.jpg plasmodium-1681.jpg plasmodium-2582.jpg\n",
+ "plasmodium-0781.jpg plasmodium-1682.jpg plasmodium-2583.jpg\n",
+ "plasmodium-0782.jpg plasmodium-1683.jpg plasmodium-2584.jpg\n",
+ "plasmodium-0783.jpg plasmodium-1684.jpg plasmodium-2585.jpg\n",
+ "plasmodium-0784.jpg plasmodium-1685.jpg plasmodium-2586.jpg\n",
+ "plasmodium-0785.jpg plasmodium-1686.jpg plasmodium-2587.jpg\n",
+ "plasmodium-0786.jpg plasmodium-1687.jpg plasmodium-2588.jpg\n",
+ "plasmodium-0787.jpg plasmodium-1688.jpg plasmodium-2589.jpg\n",
+ "plasmodium-0788.jpg plasmodium-1689.jpg plasmodium-2590.jpg\n",
+ "plasmodium-0789.jpg plasmodium-1690.jpg plasmodium-2591.jpg\n",
+ "plasmodium-0790.jpg plasmodium-1691.jpg plasmodium-2592.jpg\n",
+ "plasmodium-0791.jpg plasmodium-1692.jpg plasmodium-2593.jpg\n",
+ "plasmodium-0792.jpg plasmodium-1693.jpg plasmodium-2594.jpg\n",
+ "plasmodium-0793.jpg plasmodium-1694.jpg plasmodium-2595.jpg\n",
+ "plasmodium-0794.jpg plasmodium-1695.jpg plasmodium-2596.jpg\n",
+ "plasmodium-0795.jpg plasmodium-1696.jpg plasmodium-2597.jpg\n",
+ "plasmodium-0796.jpg plasmodium-1697.jpg plasmodium-2598.jpg\n",
+ "plasmodium-0797.jpg plasmodium-1698.jpg plasmodium-2599.jpg\n",
+ "plasmodium-0798.jpg plasmodium-1699.jpg plasmodium-2600.jpg\n",
+ "plasmodium-0799.jpg plasmodium-1700.jpg plasmodium-2601.jpg\n",
+ "plasmodium-0800.jpg plasmodium-1701.jpg plasmodium-2602.jpg\n",
+ "plasmodium-0801.jpg plasmodium-1702.jpg plasmodium-2603.jpg\n",
+ "plasmodium-0802.jpg plasmodium-1703.jpg plasmodium-2604.jpg\n",
+ "plasmodium-0803.jpg plasmodium-1704.jpg plasmodium-2605.jpg\n",
+ "plasmodium-0804.jpg plasmodium-1705.jpg plasmodium-2606.jpg\n",
+ "plasmodium-0805.jpg plasmodium-1706.jpg plasmodium-2607.jpg\n",
+ "plasmodium-0806.jpg plasmodium-1707.jpg plasmodium-2608.jpg\n",
+ "plasmodium-0807.jpg plasmodium-1708.jpg plasmodium-2609.jpg\n",
+ "plasmodium-0808.jpg plasmodium-1709.jpg plasmodium-2610.jpg\n",
+ "plasmodium-0809.jpg plasmodium-1710.jpg plasmodium-2611.jpg\n",
+ "plasmodium-0810.jpg plasmodium-1711.jpg plasmodium-2612.jpg\n",
+ "plasmodium-0811.jpg plasmodium-1712.jpg plasmodium-2613.jpg\n",
+ "plasmodium-0812.jpg plasmodium-1713.jpg plasmodium-2614.jpg\n",
+ "plasmodium-0813.jpg plasmodium-1714.jpg plasmodium-2615.jpg\n",
+ "plasmodium-0814.jpg plasmodium-1715.jpg plasmodium-2616.jpg\n",
+ "plasmodium-0815.jpg plasmodium-1716.jpg plasmodium-2617.jpg\n",
+ "plasmodium-0816.jpg plasmodium-1717.jpg plasmodium-2618.jpg\n",
+ "plasmodium-0817.jpg plasmodium-1718.jpg plasmodium-2619.jpg\n",
+ "plasmodium-0818.jpg plasmodium-1719.jpg plasmodium-2620.jpg\n",
+ "plasmodium-0819.jpg plasmodium-1720.jpg plasmodium-2621.jpg\n",
+ "plasmodium-0820.jpg plasmodium-1721.jpg plasmodium-2622.jpg\n",
+ "plasmodium-0821.jpg plasmodium-1722.jpg plasmodium-2623.jpg\n",
+ "plasmodium-0822.jpg plasmodium-1723.jpg plasmodium-2624.jpg\n",
+ "plasmodium-0823.jpg plasmodium-1724.jpg plasmodium-2625.jpg\n",
+ "plasmodium-0824.jpg plasmodium-1725.jpg plasmodium-2626.jpg\n",
+ "plasmodium-0825.jpg plasmodium-1726.jpg plasmodium-2627.jpg\n",
+ "plasmodium-0826.jpg plasmodium-1727.jpg plasmodium-2628.jpg\n",
+ "plasmodium-0827.jpg plasmodium-1728.jpg plasmodium-2629.jpg\n",
+ "plasmodium-0828.jpg plasmodium-1729.jpg plasmodium-2630.jpg\n",
+ "plasmodium-0829.jpg plasmodium-1730.jpg plasmodium-2631.jpg\n",
+ "plasmodium-0830.jpg plasmodium-1731.jpg plasmodium-2632.jpg\n",
+ "plasmodium-0831.jpg plasmodium-1732.jpg plasmodium-2633.jpg\n",
+ "plasmodium-0832.jpg plasmodium-1733.jpg plasmodium-2634.jpg\n",
+ "plasmodium-0833.jpg plasmodium-1734.jpg plasmodium-2635.jpg\n",
+ "plasmodium-0834.jpg plasmodium-1735.jpg plasmodium-2636.jpg\n",
+ "plasmodium-0835.jpg plasmodium-1736.jpg plasmodium-2637.jpg\n",
+ "plasmodium-0836.jpg plasmodium-1737.jpg plasmodium-2638.jpg\n",
+ "plasmodium-0837.jpg plasmodium-1738.jpg plasmodium-2639.jpg\n",
+ "plasmodium-0838.jpg plasmodium-1739.jpg plasmodium-2640.jpg\n",
+ "plasmodium-0839.jpg plasmodium-1740.jpg plasmodium-2641.jpg\n",
+ "plasmodium-0840.jpg plasmodium-1741.jpg plasmodium-2642.jpg\n",
+ "plasmodium-0841.jpg plasmodium-1742.jpg plasmodium-2643.jpg\n",
+ "plasmodium-0842.jpg plasmodium-1743.jpg plasmodium-2644.jpg\n",
+ "plasmodium-0843.jpg plasmodium-1744.jpg plasmodium-2645.jpg\n",
+ "plasmodium-0844.jpg plasmodium-1745.jpg plasmodium-2646.jpg\n",
+ "plasmodium-0845.jpg plasmodium-1746.jpg plasmodium-2647.jpg\n",
+ "plasmodium-0846.jpg plasmodium-1747.jpg plasmodium-2648.jpg\n",
+ "plasmodium-0847.jpg plasmodium-1748.jpg plasmodium-2649.jpg\n",
+ "plasmodium-0848.jpg plasmodium-1749.jpg plasmodium-2650.jpg\n",
+ "plasmodium-0849.jpg plasmodium-1750.jpg plasmodium-2651.jpg\n",
+ "plasmodium-0850.jpg plasmodium-1751.jpg plasmodium-2652.jpg\n",
+ "plasmodium-0851.jpg plasmodium-1752.jpg plasmodium-2653.jpg\n",
+ "plasmodium-0852.jpg plasmodium-1753.jpg plasmodium-2654.jpg\n",
+ "plasmodium-0853.jpg plasmodium-1754.jpg plasmodium-2655.jpg\n",
+ "plasmodium-0854.jpg plasmodium-1755.jpg plasmodium-2656.jpg\n",
+ "plasmodium-0855.jpg plasmodium-1756.jpg plasmodium-2657.jpg\n",
+ "plasmodium-0856.jpg plasmodium-1757.jpg plasmodium-2658.jpg\n",
+ "plasmodium-0857.jpg plasmodium-1758.jpg plasmodium-2659.jpg\n",
+ "plasmodium-0858.jpg plasmodium-1759.jpg plasmodium-2660.jpg\n",
+ "plasmodium-0859.jpg plasmodium-1760.jpg plasmodium-2661.jpg\n",
+ "plasmodium-0860.jpg plasmodium-1761.jpg plasmodium-2662.jpg\n",
+ "plasmodium-0861.jpg plasmodium-1762.jpg plasmodium-2663.jpg\n",
+ "plasmodium-0862.jpg plasmodium-1763.jpg plasmodium-2664.jpg\n",
+ "plasmodium-0863.jpg plasmodium-1764.jpg plasmodium-2665.jpg\n",
+ "plasmodium-0864.jpg plasmodium-1765.jpg plasmodium-2666.jpg\n",
+ "plasmodium-0865.jpg plasmodium-1766.jpg plasmodium-2667.jpg\n",
+ "plasmodium-0866.jpg plasmodium-1767.jpg plasmodium-2668.jpg\n",
+ "plasmodium-0867.jpg plasmodium-1768.jpg plasmodium-2669.jpg\n",
+ "plasmodium-0868.jpg plasmodium-1769.jpg plasmodium-2670.jpg\n",
+ "plasmodium-0869.jpg plasmodium-1770.jpg plasmodium-2671.jpg\n",
+ "plasmodium-0870.jpg plasmodium-1771.jpg plasmodium-2672.jpg\n",
+ "plasmodium-0871.jpg plasmodium-1772.jpg plasmodium-2673.jpg\n",
+ "plasmodium-0872.jpg plasmodium-1773.jpg plasmodium-2674.jpg\n",
+ "plasmodium-0873.jpg plasmodium-1774.jpg plasmodium-2675.jpg\n",
+ "plasmodium-0874.jpg plasmodium-1775.jpg plasmodium-2676.jpg\n",
+ "plasmodium-0875.jpg plasmodium-1776.jpg plasmodium-2677.jpg\n",
+ "plasmodium-0876.jpg plasmodium-1777.jpg plasmodium-2678.jpg\n",
+ "plasmodium-0877.jpg plasmodium-1778.jpg plasmodium-2679.jpg\n",
+ "plasmodium-0878.jpg plasmodium-1779.jpg plasmodium-2680.jpg\n",
+ "plasmodium-0879.jpg plasmodium-1780.jpg plasmodium-2681.jpg\n",
+ "plasmodium-0880.jpg plasmodium-1781.jpg plasmodium-2682.jpg\n",
+ "plasmodium-0881.jpg plasmodium-1782.jpg plasmodium-2683.jpg\n",
+ "plasmodium-0882.jpg plasmodium-1783.jpg plasmodium-2684.jpg\n",
+ "plasmodium-0883.jpg plasmodium-1784.jpg plasmodium-2685.jpg\n",
+ "plasmodium-0884.jpg plasmodium-1785.jpg plasmodium-2686.jpg\n",
+ "plasmodium-0885.jpg plasmodium-1786.jpg plasmodium-2687.jpg\n",
+ "plasmodium-0886.jpg plasmodium-1787.jpg plasmodium-2688.jpg\n",
+ "plasmodium-0887.jpg plasmodium-1788.jpg plasmodium-2689.jpg\n",
+ "plasmodium-0888.jpg plasmodium-1789.jpg plasmodium-2690.jpg\n",
+ "plasmodium-0889.jpg plasmodium-1790.jpg plasmodium-2691.jpg\n",
+ "plasmodium-0890.jpg plasmodium-1791.jpg plasmodium-2692.jpg\n",
+ "plasmodium-0891.jpg plasmodium-1792.jpg plasmodium-2693.jpg\n",
+ "plasmodium-0892.jpg plasmodium-1793.jpg plasmodium-2694.jpg\n",
+ "plasmodium-0893.jpg plasmodium-1794.jpg plasmodium-2695.jpg\n",
+ "plasmodium-0894.jpg plasmodium-1795.jpg plasmodium-2696.jpg\n",
+ "plasmodium-0895.jpg plasmodium-1796.jpg plasmodium-2697.jpg\n",
+ "plasmodium-0896.jpg plasmodium-1797.jpg plasmodium-2698.jpg\n",
+ "plasmodium-0897.jpg plasmodium-1798.jpg plasmodium-2699.jpg\n",
+ "plasmodium-0898.jpg plasmodium-1799.jpg plasmodium-2700.jpg\n",
+ "plasmodium-0899.jpg plasmodium-1800.jpg plasmodium-2701.jpg\n",
+ "plasmodium-0900.jpg plasmodium-1801.jpg plasmodium-2702.jpg\n"
+ ],
+ "name": "stdout"
+ }
+ ]
+ },
+ {
+ "cell_type": "markdown",
+ "metadata": {
+ "id": "jeT5N_R-dyKW",
+ "colab_type": "text"
+ },
+ "source": [
+ "### 4) Fix issues with the dataset"
+ ]
+ },
+ {
+ "cell_type": "code",
+ "metadata": {
+ "id": "ckoCqc8MLQdi",
+ "colab_type": "code",
+ "outputId": "32a89913-d0d2-4696-f399-78544cb37f4d",
+ "colab": {
+ "base_uri": "https://localhost:8080/",
+ "height": 1000
+ }
+ },
+ "source": [
+ "import os\n",
+ "from xml.etree import ElementTree as ET\n",
+ "\n",
+ "path = './annotation/'\n",
+ "\n",
+ "replaceString = True\n",
+ "addFileName = True\n",
+ "\n",
+ "def addname(file, xml_file):\n",
+ "\ttree = ET.parse(xml_file)\n",
+ "\troot = tree.getroot()\n",
+ "\n",
+ "\tf = ET.Element(\"filename\")\n",
+ "\n",
+ "\tf.text = file\n",
+ "\n",
+ "\troot.insert(1, f)\n",
+ "\n",
+ "\ttree.write(xml_file)\n",
+ "\n",
+ "\n",
+ "def replaceIt(filename, old, new):\n",
+ "\tf = open(filename,'r')\n",
+ "\tfiledata = f.read()\n",
+ "\tf.close()\n",
+ "\tnewdata = filedata.replace(old,new)\n",
+ "\tf = open(filename,'w')\n",
+ "\tf.write(newdata)\n",
+ "\tf.close()\n",
+ "\n",
+ "\n",
+ "\n",
+ "for filename in os.listdir(path):\n",
+ "\tif not filename.endswith('.xml'): continue\n",
+ "\tfullname = os.path.join(path, filename)\n",
+ "\tif addFileName:\n",
+ "\t\timagename = filename.replace('xml','jpg')\n",
+ "\t\taddname(imagename, fullname)\n",
+ "\tif replaceString:\n",
+ "\t\treplaceIt(fullname, \"person\", \"plasmodium\")\n",
+ "\tprint(\"Fixed\", fullname)\n",
+ "\n"
+ ],
+ "execution_count": 0,
+ "outputs": [
+ {
+ "output_type": "stream",
+ "text": [
+ "Fixed ./annotation/plasmodium-0492.xml\n",
+ "Fixed ./annotation/plasmodium-2168.xml\n",
+ "Fixed ./annotation/plasmodium-1707.xml\n",
+ "Fixed ./annotation/plasmodium-0149.xml\n",
+ "Fixed ./annotation/plasmodium-1330.xml\n",
+ "Fixed ./annotation/plasmodium-0485.xml\n",
+ "Fixed ./annotation/plasmodium-0756.xml\n",
+ "Fixed ./annotation/plasmodium-1670.xml\n",
+ "Fixed ./annotation/plasmodium-1875.xml\n",
+ "Fixed ./annotation/plasmodium-0108.xml\n",
+ "Fixed ./annotation/plasmodium-1053.xml\n",
+ "Fixed ./annotation/plasmodium-0659.xml\n",
+ "Fixed ./annotation/plasmodium-2069.xml\n",
+ "Fixed ./annotation/plasmodium-0153.xml\n",
+ "Fixed ./annotation/plasmodium-2155.xml\n",
+ "Fixed ./annotation/plasmodium-1284.xml\n",
+ "Fixed ./annotation/plasmodium-2352.xml\n",
+ "Fixed ./annotation/plasmodium-0261.xml\n",
+ "Fixed ./annotation/plasmodium-0195.xml\n",
+ "Fixed ./annotation/plasmodium-1939.xml\n",
+ "Fixed ./annotation/plasmodium-1430.xml\n",
+ "Fixed ./annotation/plasmodium-0935.xml\n",
+ "Fixed ./annotation/plasmodium-0041.xml\n",
+ "Fixed ./annotation/plasmodium-0605.xml\n",
+ "Fixed ./annotation/plasmodium-1007.xml\n",
+ "Fixed ./annotation/plasmodium-0783.xml\n",
+ "Fixed ./annotation/plasmodium-2442.xml\n",
+ "Fixed ./annotation/plasmodium-1742.xml\n",
+ "Fixed ./annotation/plasmodium-1415.xml\n",
+ "Fixed ./annotation/plasmodium-0619.xml\n",
+ "Fixed ./annotation/plasmodium-0321.xml\n",
+ "Fixed ./annotation/plasmodium-0021.xml\n",
+ "Fixed ./annotation/plasmodium-0442.xml\n",
+ "Fixed ./annotation/plasmodium-2011.xml\n",
+ "Fixed ./annotation/plasmodium-2277.xml\n",
+ "Fixed ./annotation/plasmodium-1044.xml\n",
+ "Fixed ./annotation/plasmodium-2454.xml\n",
+ "Fixed ./annotation/plasmodium-2469.xml\n",
+ "Fixed ./annotation/plasmodium-2185.xml\n",
+ "Fixed ./annotation/plasmodium-0703.xml\n",
+ "Fixed ./annotation/plasmodium-1986.xml\n",
+ "Fixed ./annotation/plasmodium-1647.xml\n",
+ "Fixed ./annotation/plasmodium-2075.xml\n",
+ "Fixed ./annotation/plasmodium-0658.xml\n",
+ "Fixed ./annotation/plasmodium-1648.xml\n",
+ "Fixed ./annotation/plasmodium-1826.xml\n",
+ "Fixed ./annotation/plasmodium-1862.xml\n",
+ "Fixed ./annotation/plasmodium-1108.xml\n",
+ "Fixed ./annotation/plasmodium-1211.xml\n",
+ "Fixed ./annotation/plasmodium-2427.xml\n",
+ "Fixed ./annotation/plasmodium-1713.xml\n",
+ "Fixed ./annotation/plasmodium-0803.xml\n",
+ "Fixed ./annotation/plasmodium-1234.xml\n",
+ "Fixed ./annotation/plasmodium-1709.xml\n",
+ "Fixed ./annotation/plasmodium-0299.xml\n",
+ "Fixed ./annotation/plasmodium-1273.xml\n",
+ "Fixed ./annotation/plasmodium-1050.xml\n",
+ "Fixed ./annotation/plasmodium-0718.xml\n",
+ "Fixed ./annotation/plasmodium-2577.xml\n",
+ "Fixed ./annotation/plasmodium-0636.xml\n",
+ "Fixed ./annotation/plasmodium-0971.xml\n",
+ "Fixed ./annotation/plasmodium-1142.xml\n",
+ "Fixed ./annotation/plasmodium-2406.xml\n",
+ "Fixed ./annotation/plasmodium-2568.xml\n",
+ "Fixed ./annotation/plasmodium-0852.xml\n",
+ "Fixed ./annotation/plasmodium-1463.xml\n",
+ "Fixed ./annotation/plasmodium-2438.xml\n",
+ "Fixed ./annotation/plasmodium-2532.xml\n",
+ "Fixed ./annotation/plasmodium-1348.xml\n",
+ "Fixed ./annotation/plasmodium-2663.xml\n",
+ "Fixed ./annotation/plasmodium-0649.xml\n",
+ "Fixed ./annotation/plasmodium-1054.xml\n",
+ "Fixed ./annotation/plasmodium-2206.xml\n",
+ "Fixed ./annotation/plasmodium-0721.xml\n",
+ "Fixed ./annotation/plasmodium-0847.xml\n",
+ "Fixed ./annotation/plasmodium-1633.xml\n",
+ "Fixed ./annotation/plasmodium-1890.xml\n",
+ "Fixed ./annotation/plasmodium-0961.xml\n",
+ "Fixed ./annotation/plasmodium-1381.xml\n",
+ "Fixed ./annotation/plasmodium-1555.xml\n",
+ "Fixed ./annotation/plasmodium-2191.xml\n",
+ "Fixed ./annotation/plasmodium-2509.xml\n",
+ "Fixed ./annotation/plasmodium-1810.xml\n",
+ "Fixed ./annotation/plasmodium-0469.xml\n",
+ "Fixed ./annotation/plasmodium-0888.xml\n",
+ "Fixed ./annotation/plasmodium-0845.xml\n",
+ "Fixed ./annotation/plasmodium-2695.xml\n",
+ "Fixed ./annotation/plasmodium-0289.xml\n",
+ "Fixed ./annotation/plasmodium-0091.xml\n",
+ "Fixed ./annotation/plasmodium-2430.xml\n",
+ "Fixed ./annotation/plasmodium-1984.xml\n",
+ "Fixed ./annotation/plasmodium-1244.xml\n",
+ "Fixed ./annotation/plasmodium-1135.xml\n",
+ "Fixed ./annotation/plasmodium-1274.xml\n",
+ "Fixed ./annotation/plasmodium-1089.xml\n",
+ "Fixed ./annotation/plasmodium-2437.xml\n",
+ "Fixed ./annotation/plasmodium-1256.xml\n",
+ "Fixed ./annotation/plasmodium-1163.xml\n",
+ "Fixed ./annotation/plasmodium-0439.xml\n",
+ "Fixed ./annotation/plasmodium-2180.xml\n",
+ "Fixed ./annotation/plasmodium-1318.xml\n",
+ "Fixed ./annotation/plasmodium-0411.xml\n",
+ "Fixed ./annotation/plasmodium-2296.xml\n",
+ "Fixed ./annotation/plasmodium-2250.xml\n",
+ "Fixed ./annotation/plasmodium-1575.xml\n",
+ "Fixed ./annotation/plasmodium-1646.xml\n",
+ "Fixed ./annotation/plasmodium-2367.xml\n",
+ "Fixed ./annotation/plasmodium-2389.xml\n",
+ "Fixed ./annotation/plasmodium-2587.xml\n",
+ "Fixed ./annotation/plasmodium-1259.xml\n",
+ "Fixed ./annotation/plasmodium-2483.xml\n",
+ "Fixed ./annotation/plasmodium-1059.xml\n",
+ "Fixed ./annotation/plasmodium-0450.xml\n",
+ "Fixed ./annotation/plasmodium-0479.xml\n",
+ "Fixed ./annotation/plasmodium-0353.xml\n",
+ "Fixed ./annotation/plasmodium-0175.xml\n",
+ "Fixed ./annotation/plasmodium-2295.xml\n",
+ "Fixed ./annotation/plasmodium-0973.xml\n",
+ "Fixed ./annotation/plasmodium-2291.xml\n",
+ "Fixed ./annotation/plasmodium-1147.xml\n",
+ "Fixed ./annotation/plasmodium-0530.xml\n",
+ "Fixed ./annotation/plasmodium-2404.xml\n",
+ "Fixed ./annotation/plasmodium-1924.xml\n",
+ "Fixed ./annotation/plasmodium-0566.xml\n",
+ "Fixed ./annotation/plasmodium-2335.xml\n",
+ "Fixed ./annotation/plasmodium-1222.xml\n",
+ "Fixed ./annotation/plasmodium-1464.xml\n",
+ "Fixed ./annotation/plasmodium-0881.xml\n",
+ "Fixed ./annotation/plasmodium-2516.xml\n",
+ "Fixed ./annotation/plasmodium-0931.xml\n",
+ "Fixed ./annotation/plasmodium-1795.xml\n",
+ "Fixed ./annotation/plasmodium-0799.xml\n",
+ "Fixed ./annotation/plasmodium-0208.xml\n",
+ "Fixed ./annotation/plasmodium-1442.xml\n",
+ "Fixed ./annotation/plasmodium-2599.xml\n",
+ "Fixed ./annotation/plasmodium-0587.xml\n",
+ "Fixed ./annotation/plasmodium-2653.xml\n",
+ "Fixed ./annotation/plasmodium-1143.xml\n",
+ "Fixed ./annotation/plasmodium-0434.xml\n",
+ "Fixed ./annotation/plasmodium-1654.xml\n",
+ "Fixed ./annotation/plasmodium-1861.xml\n",
+ "Fixed ./annotation/plasmodium-1956.xml\n",
+ "Fixed ./annotation/plasmodium-0339.xml\n",
+ "Fixed ./annotation/plasmodium-0476.xml\n",
+ "Fixed ./annotation/plasmodium-1275.xml\n",
+ "Fixed ./annotation/plasmodium-0892.xml\n",
+ "Fixed ./annotation/plasmodium-1424.xml\n",
+ "Fixed ./annotation/plasmodium-0267.xml\n",
+ "Fixed ./annotation/plasmodium-0234.xml\n",
+ "Fixed ./annotation/plasmodium-2631.xml\n",
+ "Fixed ./annotation/plasmodium-0684.xml\n",
+ "Fixed ./annotation/plasmodium-1573.xml\n",
+ "Fixed ./annotation/plasmodium-2160.xml\n",
+ "Fixed ./annotation/plasmodium-2460.xml\n",
+ "Fixed ./annotation/plasmodium-0538.xml\n",
+ "Fixed ./annotation/plasmodium-1853.xml\n",
+ "Fixed ./annotation/plasmodium-0958.xml\n",
+ "Fixed ./annotation/plasmodium-0813.xml\n",
+ "Fixed ./annotation/plasmodium-1783.xml\n",
+ "Fixed ./annotation/plasmodium-0656.xml\n",
+ "Fixed ./annotation/plasmodium-2063.xml\n",
+ "Fixed ./annotation/plasmodium-2536.xml\n",
+ "Fixed ./annotation/plasmodium-0016.xml\n",
+ "Fixed ./annotation/plasmodium-0056.xml\n",
+ "Fixed ./annotation/plasmodium-1173.xml\n",
+ "Fixed ./annotation/plasmodium-1094.xml\n",
+ "Fixed ./annotation/plasmodium-2001.xml\n",
+ "Fixed ./annotation/plasmodium-0294.xml\n",
+ "Fixed ./annotation/plasmodium-0301.xml\n",
+ "Fixed ./annotation/plasmodium-1854.xml\n",
+ "Fixed ./annotation/plasmodium-2647.xml\n",
+ "Fixed ./annotation/plasmodium-2561.xml\n",
+ "Fixed ./annotation/plasmodium-0767.xml\n",
+ "Fixed ./annotation/plasmodium-0112.xml\n",
+ "Fixed ./annotation/plasmodium-0661.xml\n",
+ "Fixed ./annotation/plasmodium-0836.xml\n",
+ "Fixed ./annotation/plasmodium-2230.xml\n",
+ "Fixed ./annotation/plasmodium-0942.xml\n",
+ "Fixed ./annotation/plasmodium-2124.xml\n",
+ "Fixed ./annotation/plasmodium-0818.xml\n",
+ "Fixed ./annotation/plasmodium-1243.xml\n",
+ "Fixed ./annotation/plasmodium-2288.xml\n",
+ "Fixed ./annotation/plasmodium-1055.xml\n",
+ "Fixed ./annotation/plasmodium-0462.xml\n",
+ "Fixed ./annotation/plasmodium-1599.xml\n",
+ "Fixed ./annotation/plasmodium-1898.xml\n",
+ "Fixed ./annotation/plasmodium-0328.xml\n",
+ "Fixed ./annotation/plasmodium-2425.xml\n",
+ "Fixed ./annotation/plasmodium-1937.xml\n",
+ "Fixed ./annotation/plasmodium-0705.xml\n",
+ "Fixed ./annotation/plasmodium-0770.xml\n",
+ "Fixed ./annotation/plasmodium-0213.xml\n",
+ "Fixed ./annotation/plasmodium-1063.xml\n",
+ "Fixed ./annotation/plasmodium-0348.xml\n",
+ "Fixed ./annotation/plasmodium-2028.xml\n",
+ "Fixed ./annotation/plasmodium-0005.xml\n",
+ "Fixed ./annotation/plasmodium-0308.xml\n",
+ "Fixed ./annotation/plasmodium-0731.xml\n",
+ "Fixed ./annotation/plasmodium-0250.xml\n",
+ "Fixed ./annotation/plasmodium-2558.xml\n",
+ "Fixed ./annotation/plasmodium-2443.xml\n",
+ "Fixed ./annotation/plasmodium-2146.xml\n",
+ "Fixed ./annotation/plasmodium-1855.xml\n",
+ "Fixed ./annotation/plasmodium-1585.xml\n",
+ "Fixed ./annotation/plasmodium-1953.xml\n",
+ "Fixed ./annotation/plasmodium-0498.xml\n",
+ "Fixed ./annotation/plasmodium-2148.xml\n",
+ "Fixed ./annotation/plasmodium-1973.xml\n",
+ "Fixed ./annotation/plasmodium-0732.xml\n",
+ "Fixed ./annotation/plasmodium-1549.xml\n",
+ "Fixed ./annotation/plasmodium-1570.xml\n",
+ "Fixed ./annotation/plasmodium-0077.xml\n",
+ "Fixed ./annotation/plasmodium-0727.xml\n",
+ "Fixed ./annotation/plasmodium-1192.xml\n",
+ "Fixed ./annotation/plasmodium-1799.xml\n",
+ "Fixed ./annotation/plasmodium-0058.xml\n",
+ "Fixed ./annotation/plasmodium-1617.xml\n",
+ "Fixed ./annotation/plasmodium-1248.xml\n",
+ "Fixed ./annotation/plasmodium-2287.xml\n",
+ "Fixed ./annotation/plasmodium-1719.xml\n",
+ "Fixed ./annotation/plasmodium-0131.xml\n",
+ "Fixed ./annotation/plasmodium-1034.xml\n",
+ "Fixed ./annotation/plasmodium-2261.xml\n",
+ "Fixed ./annotation/plasmodium-0024.xml\n",
+ "Fixed ./annotation/plasmodium-1060.xml\n",
+ "Fixed ./annotation/plasmodium-1052.xml\n",
+ "Fixed ./annotation/plasmodium-1798.xml\n",
+ "Fixed ./annotation/plasmodium-1968.xml\n",
+ "Fixed ./annotation/plasmodium-0356.xml\n",
+ "Fixed ./annotation/plasmodium-2234.xml\n",
+ "Fixed ./annotation/plasmodium-2246.xml\n",
+ "Fixed ./annotation/plasmodium-1106.xml\n",
+ "Fixed ./annotation/plasmodium-0862.xml\n",
+ "Fixed ./annotation/plasmodium-0032.xml\n",
+ "Fixed ./annotation/plasmodium-0443.xml\n",
+ "Fixed ./annotation/plasmodium-0938.xml\n",
+ "Fixed ./annotation/plasmodium-1134.xml\n",
+ "Fixed ./annotation/plasmodium-2385.xml\n",
+ "Fixed ./annotation/plasmodium-0672.xml\n",
+ "Fixed ./annotation/plasmodium-2676.xml\n",
+ "Fixed ./annotation/plasmodium-2106.xml\n",
+ "Fixed ./annotation/plasmodium-2027.xml\n",
+ "Fixed ./annotation/plasmodium-1000.xml\n",
+ "Fixed ./annotation/plasmodium-0810.xml\n",
+ "Fixed ./annotation/plasmodium-0421.xml\n",
+ "Fixed ./annotation/plasmodium-1876.xml\n",
+ "Fixed ./annotation/plasmodium-0554.xml\n",
+ "Fixed ./annotation/plasmodium-1669.xml\n",
+ "Fixed ./annotation/plasmodium-0087.xml\n",
+ "Fixed ./annotation/plasmodium-1944.xml\n",
+ "Fixed ./annotation/plasmodium-2259.xml\n",
+ "Fixed ./annotation/plasmodium-1289.xml\n",
+ "Fixed ./annotation/plasmodium-2110.xml\n",
+ "Fixed ./annotation/plasmodium-1307.xml\n",
+ "Fixed ./annotation/plasmodium-0816.xml\n",
+ "Fixed ./annotation/plasmodium-2490.xml\n",
+ "Fixed ./annotation/plasmodium-1893.xml\n",
+ "Fixed ./annotation/plasmodium-0459.xml\n",
+ "Fixed ./annotation/plasmodium-0634.xml\n",
+ "Fixed ./annotation/plasmodium-1200.xml\n",
+ "Fixed ./annotation/plasmodium-1102.xml\n",
+ "Fixed ./annotation/plasmodium-0929.xml\n",
+ "Fixed ./annotation/plasmodium-2642.xml\n",
+ "Fixed ./annotation/plasmodium-0355.xml\n",
+ "Fixed ./annotation/plasmodium-0446.xml\n",
+ "Fixed ./annotation/plasmodium-2528.xml\n",
+ "Fixed ./annotation/plasmodium-2622.xml\n",
+ "Fixed ./annotation/plasmodium-2636.xml\n",
+ "Fixed ./annotation/plasmodium-0324.xml\n",
+ "Fixed ./annotation/plasmodium-0940.xml\n",
+ "Fixed ./annotation/plasmodium-0106.xml\n",
+ "Fixed ./annotation/plasmodium-0565.xml\n",
+ "Fixed ./annotation/plasmodium-0793.xml\n",
+ "Fixed ./annotation/plasmodium-1850.xml\n",
+ "Fixed ./annotation/plasmodium-0239.xml\n",
+ "Fixed ./annotation/plasmodium-1979.xml\n",
+ "Fixed ./annotation/plasmodium-1394.xml\n",
+ "Fixed ./annotation/plasmodium-2074.xml\n",
+ "Fixed ./annotation/plasmodium-1368.xml\n",
+ "Fixed ./annotation/plasmodium-0066.xml\n",
+ "Fixed ./annotation/plasmodium-1730.xml\n",
+ "Fixed ./annotation/plasmodium-0710.xml\n",
+ "Fixed ./annotation/plasmodium-0053.xml\n",
+ "Fixed ./annotation/plasmodium-1971.xml\n",
+ "Fixed ./annotation/plasmodium-0653.xml\n",
+ "Fixed ./annotation/plasmodium-1118.xml\n",
+ "Fixed ./annotation/plasmodium-1997.xml\n",
+ "Fixed ./annotation/plasmodium-2050.xml\n",
+ "Fixed ./annotation/plasmodium-2661.xml\n",
+ "Fixed ./annotation/plasmodium-2102.xml\n",
+ "Fixed ./annotation/plasmodium-0090.xml\n",
+ "Fixed ./annotation/plasmodium-2257.xml\n",
+ "Fixed ./annotation/plasmodium-0921.xml\n",
+ "Fixed ./annotation/plasmodium-2699.xml\n",
+ "Fixed ./annotation/plasmodium-2673.xml\n",
+ "Fixed ./annotation/plasmodium-0306.xml\n",
+ "Fixed ./annotation/plasmodium-2539.xml\n",
+ "Fixed ./annotation/plasmodium-0072.xml\n",
+ "Fixed ./annotation/plasmodium-0997.xml\n",
+ "Fixed ./annotation/plasmodium-1693.xml\n",
+ "Fixed ./annotation/plasmodium-1735.xml\n",
+ "Fixed ./annotation/plasmodium-0867.xml\n",
+ "Fixed ./annotation/plasmodium-2119.xml\n",
+ "Fixed ./annotation/plasmodium-2089.xml\n",
+ "Fixed ./annotation/plasmodium-0254.xml\n",
+ "Fixed ./annotation/plasmodium-1238.xml\n",
+ "Fixed ./annotation/plasmodium-2267.xml\n",
+ "Fixed ./annotation/plasmodium-2285.xml\n",
+ "Fixed ./annotation/plasmodium-0761.xml\n",
+ "Fixed ./annotation/plasmodium-1720.xml\n",
+ "Fixed ./annotation/plasmodium-1036.xml\n",
+ "Fixed ./annotation/plasmodium-0034.xml\n",
+ "Fixed ./annotation/plasmodium-0272.xml\n",
+ "Fixed ./annotation/plasmodium-0505.xml\n",
+ "Fixed ./annotation/plasmodium-1625.xml\n",
+ "Fixed ./annotation/plasmodium-0232.xml\n",
+ "Fixed ./annotation/plasmodium-1665.xml\n",
+ "Fixed ./annotation/plasmodium-0089.xml\n",
+ "Fixed ./annotation/plasmodium-1304.xml\n",
+ "Fixed ./annotation/plasmodium-2502.xml\n",
+ "Fixed ./annotation/plasmodium-0981.xml\n",
+ "Fixed ./annotation/plasmodium-1332.xml\n",
+ "Fixed ./annotation/plasmodium-1840.xml\n",
+ "Fixed ./annotation/plasmodium-2683.xml\n",
+ "Fixed ./annotation/plasmodium-2481.xml\n",
+ "Fixed ./annotation/plasmodium-0022.xml\n",
+ "Fixed ./annotation/plasmodium-0910.xml\n",
+ "Fixed ./annotation/plasmodium-2550.xml\n",
+ "Fixed ./annotation/plasmodium-1507.xml\n",
+ "Fixed ./annotation/plasmodium-2650.xml\n",
+ "Fixed ./annotation/plasmodium-1569.xml\n",
+ "Fixed ./annotation/plasmodium-0996.xml\n",
+ "Fixed ./annotation/plasmodium-0282.xml\n",
+ "Fixed ./annotation/plasmodium-1245.xml\n",
+ "Fixed ./annotation/plasmodium-2101.xml\n",
+ "Fixed ./annotation/plasmodium-1556.xml\n",
+ "Fixed ./annotation/plasmodium-0907.xml\n",
+ "Fixed ./annotation/plasmodium-0305.xml\n",
+ "Fixed ./annotation/plasmodium-2033.xml\n",
+ "Fixed ./annotation/plasmodium-0228.xml\n",
+ "Fixed ./annotation/plasmodium-1907.xml\n",
+ "Fixed ./annotation/plasmodium-0616.xml\n",
+ "Fixed ./annotation/plasmodium-2525.xml\n",
+ "Fixed ./annotation/plasmodium-2651.xml\n",
+ "Fixed ./annotation/plasmodium-0384.xml\n",
+ "Fixed ./annotation/plasmodium-1076.xml\n",
+ "Fixed ./annotation/plasmodium-2562.xml\n",
+ "Fixed ./annotation/plasmodium-1846.xml\n",
+ "Fixed ./annotation/plasmodium-2252.xml\n",
+ "Fixed ./annotation/plasmodium-0683.xml\n",
+ "Fixed ./annotation/plasmodium-0995.xml\n",
+ "Fixed ./annotation/plasmodium-2341.xml\n",
+ "Fixed ./annotation/plasmodium-1372.xml\n",
+ "Fixed ./annotation/plasmodium-1932.xml\n",
+ "Fixed ./annotation/plasmodium-0899.xml\n",
+ "Fixed ./annotation/plasmodium-0708.xml\n",
+ "Fixed ./annotation/plasmodium-0438.xml\n",
+ "Fixed ./annotation/plasmodium-1323.xml\n",
+ "Fixed ./annotation/plasmodium-1427.xml\n",
+ "Fixed ./annotation/plasmodium-0754.xml\n",
+ "Fixed ./annotation/plasmodium-0402.xml\n",
+ "Fixed ./annotation/plasmodium-2498.xml\n",
+ "Fixed ./annotation/plasmodium-0162.xml\n",
+ "Fixed ./annotation/plasmodium-2038.xml\n",
+ "Fixed ./annotation/plasmodium-2112.xml\n",
+ "Fixed ./annotation/plasmodium-2537.xml\n",
+ "Fixed ./annotation/plasmodium-0990.xml\n",
+ "Fixed ./annotation/plasmodium-0889.xml\n",
+ "Fixed ./annotation/plasmodium-2386.xml\n",
+ "Fixed ./annotation/plasmodium-1126.xml\n",
+ "Fixed ./annotation/plasmodium-2301.xml\n",
+ "Fixed ./annotation/plasmodium-0685.xml\n",
+ "Fixed ./annotation/plasmodium-2258.xml\n",
+ "Fixed ./annotation/plasmodium-2681.xml\n",
+ "Fixed ./annotation/plasmodium-1774.xml\n",
+ "Fixed ./annotation/plasmodium-0293.xml\n",
+ "Fixed ./annotation/plasmodium-2548.xml\n",
+ "Fixed ./annotation/plasmodium-1112.xml\n",
+ "Fixed ./annotation/plasmodium-2479.xml\n",
+ "Fixed ./annotation/plasmodium-0057.xml\n",
+ "Fixed ./annotation/plasmodium-2381.xml\n",
+ "Fixed ./annotation/plasmodium-0913.xml\n",
+ "Fixed ./annotation/plasmodium-1561.xml\n",
+ "Fixed ./annotation/plasmodium-0738.xml\n",
+ "Fixed ./annotation/plasmodium-1755.xml\n",
+ "Fixed ./annotation/plasmodium-0275.xml\n",
+ "Fixed ./annotation/plasmodium-2559.xml\n",
+ "Fixed ./annotation/plasmodium-2066.xml\n",
+ "Fixed ./annotation/plasmodium-0454.xml\n",
+ "Fixed ./annotation/plasmodium-0349.xml\n",
+ "Fixed ./annotation/plasmodium-2440.xml\n",
+ "Fixed ./annotation/plasmodium-0117.xml\n",
+ "Fixed ./annotation/plasmodium-2171.xml\n",
+ "Fixed ./annotation/plasmodium-0436.xml\n",
+ "Fixed ./annotation/plasmodium-2366.xml\n",
+ "Fixed ./annotation/plasmodium-2380.xml\n",
+ "Fixed ./annotation/plasmodium-1315.xml\n",
+ "Fixed ./annotation/plasmodium-2580.xml\n",
+ "Fixed ./annotation/plasmodium-2255.xml\n",
+ "Fixed ./annotation/plasmodium-0233.xml\n",
+ "Fixed ./annotation/plasmodium-1210.xml\n",
+ "Fixed ./annotation/plasmodium-2608.xml\n",
+ "Fixed ./annotation/plasmodium-1088.xml\n",
+ "Fixed ./annotation/plasmodium-1386.xml\n",
+ "Fixed ./annotation/plasmodium-0966.xml\n",
+ "Fixed ./annotation/plasmodium-1785.xml\n",
+ "Fixed ./annotation/plasmodium-1231.xml\n",
+ "Fixed ./annotation/plasmodium-2505.xml\n",
+ "Fixed ./annotation/plasmodium-0101.xml\n",
+ "Fixed ./annotation/plasmodium-0069.xml\n",
+ "Fixed ./annotation/plasmodium-1165.xml\n",
+ "Fixed ./annotation/plasmodium-0467.xml\n",
+ "Fixed ./annotation/plasmodium-1624.xml\n",
+ "Fixed ./annotation/plasmodium-2220.xml\n",
+ "Fixed ./annotation/plasmodium-2078.xml\n",
+ "Fixed ./annotation/plasmodium-0166.xml\n",
+ "Fixed ./annotation/plasmodium-0465.xml\n",
+ "Fixed ./annotation/plasmodium-0420.xml\n",
+ "Fixed ./annotation/plasmodium-0559.xml\n",
+ "Fixed ./annotation/plasmodium-1698.xml\n",
+ "Fixed ./annotation/plasmodium-0769.xml\n",
+ "Fixed ./annotation/plasmodium-0494.xml\n",
+ "Fixed ./annotation/plasmodium-0461.xml\n",
+ "Fixed ./annotation/plasmodium-1551.xml\n",
+ "Fixed ./annotation/plasmodium-1459.xml\n",
+ "Fixed ./annotation/plasmodium-2372.xml\n",
+ "Fixed ./annotation/plasmodium-1712.xml\n",
+ "Fixed ./annotation/plasmodium-2251.xml\n",
+ "Fixed ./annotation/plasmodium-1916.xml\n",
+ "Fixed ./annotation/plasmodium-0376.xml\n",
+ "Fixed ./annotation/plasmodium-2279.xml\n",
+ "Fixed ./annotation/plasmodium-1628.xml\n",
+ "Fixed ./annotation/plasmodium-1563.xml\n",
+ "Fixed ./annotation/plasmodium-1565.xml\n",
+ "Fixed ./annotation/plasmodium-0219.xml\n",
+ "Fixed ./annotation/plasmodium-1353.xml\n",
+ "Fixed ./annotation/plasmodium-2239.xml\n",
+ "Fixed ./annotation/plasmodium-0529.xml\n",
+ "Fixed ./annotation/plasmodium-2204.xml\n",
+ "Fixed ./annotation/plasmodium-1398.xml\n",
+ "Fixed ./annotation/plasmodium-1113.xml\n",
+ "Fixed ./annotation/plasmodium-1347.xml\n",
+ "Fixed ./annotation/plasmodium-2333.xml\n",
+ "Fixed ./annotation/plasmodium-1027.xml\n",
+ "Fixed ./annotation/plasmodium-1410.xml\n",
+ "Fixed ./annotation/plasmodium-0714.xml\n",
+ "Fixed ./annotation/plasmodium-0557.xml\n",
+ "Fixed ./annotation/plasmodium-2131.xml\n",
+ "Fixed ./annotation/plasmodium-0212.xml\n",
+ "Fixed ./annotation/plasmodium-1586.xml\n",
+ "Fixed ./annotation/plasmodium-2447.xml\n",
+ "Fixed ./annotation/plasmodium-1146.xml\n",
+ "Fixed ./annotation/plasmodium-0085.xml\n",
+ "Fixed ./annotation/plasmodium-1874.xml\n",
+ "Fixed ./annotation/plasmodium-0669.xml\n",
+ "Fixed ./annotation/plasmodium-0571.xml\n",
+ "Fixed ./annotation/plasmodium-0639.xml\n",
+ "Fixed ./annotation/plasmodium-0352.xml\n",
+ "Fixed ./annotation/plasmodium-1498.xml\n",
+ "Fixed ./annotation/plasmodium-2080.xml\n",
+ "Fixed ./annotation/plasmodium-0427.xml\n",
+ "Fixed ./annotation/plasmodium-0286.xml\n",
+ "Fixed ./annotation/plasmodium-1873.xml\n",
+ "Fixed ./annotation/plasmodium-2325.xml\n",
+ "Fixed ./annotation/plasmodium-1905.xml\n",
+ "Fixed ./annotation/plasmodium-2458.xml\n",
+ "Fixed ./annotation/plasmodium-0919.xml\n",
+ "Fixed ./annotation/plasmodium-1615.xml\n",
+ "Fixed ./annotation/plasmodium-0009.xml\n",
+ "Fixed ./annotation/plasmodium-0717.xml\n",
+ "Fixed ./annotation/plasmodium-0690.xml\n",
+ "Fixed ./annotation/plasmodium-0604.xml\n",
+ "Fixed ./annotation/plasmodium-2392.xml\n",
+ "Fixed ./annotation/plasmodium-1733.xml\n",
+ "Fixed ./annotation/plasmodium-2408.xml\n",
+ "Fixed ./annotation/plasmodium-1378.xml\n",
+ "Fixed ./annotation/plasmodium-1337.xml\n",
+ "Fixed ./annotation/plasmodium-1781.xml\n",
+ "Fixed ./annotation/plasmodium-0780.xml\n",
+ "Fixed ./annotation/plasmodium-0003.xml\n",
+ "Fixed ./annotation/plasmodium-2368.xml\n",
+ "Fixed ./annotation/plasmodium-1198.xml\n",
+ "Fixed ./annotation/plasmodium-1632.xml\n",
+ "Fixed ./annotation/plasmodium-1714.xml\n",
+ "Fixed ./annotation/plasmodium-1204.xml\n",
+ "Fixed ./annotation/plasmodium-1767.xml\n",
+ "Fixed ./annotation/plasmodium-0781.xml\n",
+ "Fixed ./annotation/plasmodium-0811.xml\n",
+ "Fixed ./annotation/plasmodium-2243.xml\n",
+ "Fixed ./annotation/plasmodium-0167.xml\n",
+ "Fixed ./annotation/plasmodium-1407.xml\n",
+ "Fixed ./annotation/plasmodium-1456.xml\n",
+ "Fixed ./annotation/plasmodium-0692.xml\n",
+ "Fixed ./annotation/plasmodium-2482.xml\n",
+ "Fixed ./annotation/plasmodium-1352.xml\n",
+ "Fixed ./annotation/plasmodium-0007.xml\n",
+ "Fixed ./annotation/plasmodium-1136.xml\n",
+ "Fixed ./annotation/plasmodium-1525.xml\n",
+ "Fixed ./annotation/plasmodium-1002.xml\n",
+ "Fixed ./annotation/plasmodium-1537.xml\n",
+ "Fixed ./annotation/plasmodium-0724.xml\n",
+ "Fixed ./annotation/plasmodium-2192.xml\n",
+ "Fixed ./annotation/plasmodium-0080.xml\n",
+ "Fixed ./annotation/plasmodium-0270.xml\n",
+ "Fixed ./annotation/plasmodium-1009.xml\n",
+ "Fixed ./annotation/plasmodium-1836.xml\n",
+ "Fixed ./annotation/plasmodium-0158.xml\n",
+ "Fixed ./annotation/plasmodium-1538.xml\n",
+ "Fixed ./annotation/plasmodium-1523.xml\n",
+ "Fixed ./annotation/plasmodium-0794.xml\n",
+ "Fixed ./annotation/plasmodium-1374.xml\n",
+ "Fixed ./annotation/plasmodium-1294.xml\n",
+ "Fixed ./annotation/plasmodium-0259.xml\n",
+ "Fixed ./annotation/plasmodium-1574.xml\n",
+ "Fixed ./annotation/plasmodium-1734.xml\n",
+ "Fixed ./annotation/plasmodium-0849.xml\n",
+ "Fixed ./annotation/plasmodium-0875.xml\n",
+ "Fixed ./annotation/plasmodium-0248.xml\n",
+ "Fixed ./annotation/plasmodium-1697.xml\n",
+ "Fixed ./annotation/plasmodium-0946.xml\n",
+ "Fixed ./annotation/plasmodium-0086.xml\n",
+ "Fixed ./annotation/plasmodium-1717.xml\n",
+ "Fixed ./annotation/plasmodium-0079.xml\n",
+ "Fixed ./annotation/plasmodium-1152.xml\n",
+ "Fixed ./annotation/plasmodium-2085.xml\n",
+ "Fixed ./annotation/plasmodium-2200.xml\n",
+ "Fixed ./annotation/plasmodium-0868.xml\n",
+ "Fixed ./annotation/plasmodium-2645.xml\n",
+ "Fixed ./annotation/plasmodium-1985.xml\n",
+ "Fixed ./annotation/plasmodium-1972.xml\n",
+ "Fixed ./annotation/plasmodium-2284.xml\n",
+ "Fixed ./annotation/plasmodium-2126.xml\n",
+ "Fixed ./annotation/plasmodium-0626.xml\n",
+ "Fixed ./annotation/plasmodium-2083.xml\n",
+ "Fixed ./annotation/plasmodium-1422.xml\n",
+ "Fixed ./annotation/plasmodium-2170.xml\n",
+ "Fixed ./annotation/plasmodium-2245.xml\n",
+ "Fixed ./annotation/plasmodium-0614.xml\n",
+ "Fixed ./annotation/plasmodium-0590.xml\n",
+ "Fixed ./annotation/plasmodium-2396.xml\n",
+ "Fixed ./annotation/plasmodium-1051.xml\n",
+ "Fixed ./annotation/plasmodium-1977.xml\n",
+ "Fixed ./annotation/plasmodium-2145.xml\n",
+ "Fixed ./annotation/plasmodium-0895.xml\n",
+ "Fixed ./annotation/plasmodium-1872.xml\n",
+ "Fixed ./annotation/plasmodium-0054.xml\n",
+ "Fixed ./annotation/plasmodium-0911.xml\n",
+ "Fixed ./annotation/plasmodium-0640.xml\n",
+ "Fixed ./annotation/plasmodium-1915.xml\n",
+ "Fixed ./annotation/plasmodium-2045.xml\n",
+ "Fixed ./annotation/plasmodium-1740.xml\n",
+ "Fixed ./annotation/plasmodium-0148.xml\n",
+ "Fixed ./annotation/plasmodium-0504.xml\n",
+ "Fixed ./annotation/plasmodium-1627.xml\n",
+ "Fixed ./annotation/plasmodium-1281.xml\n",
+ "Fixed ./annotation/plasmodium-2073.xml\n",
+ "Fixed ./annotation/plasmodium-1073.xml\n",
+ "Fixed ./annotation/plasmodium-1678.xml\n",
+ "Fixed ./annotation/plasmodium-1584.xml\n",
+ "Fixed ./annotation/plasmodium-2190.xml\n",
+ "Fixed ./annotation/plasmodium-0331.xml\n",
+ "Fixed ./annotation/plasmodium-0905.xml\n",
+ "Fixed ./annotation/plasmodium-0011.xml\n",
+ "Fixed ./annotation/plasmodium-0729.xml\n",
+ "Fixed ./annotation/plasmodium-1408.xml\n",
+ "Fixed ./annotation/plasmodium-2412.xml\n",
+ "Fixed ./annotation/plasmodium-1150.xml\n",
+ "Fixed ./annotation/plasmodium-1947.xml\n",
+ "Fixed ./annotation/plasmodium-1987.xml\n",
+ "Fixed ./annotation/plasmodium-1160.xml\n",
+ "Fixed ./annotation/plasmodium-0989.xml\n",
+ "Fixed ./annotation/plasmodium-0484.xml\n",
+ "Fixed ./annotation/plasmodium-1743.xml\n",
+ "Fixed ./annotation/plasmodium-1645.xml\n",
+ "Fixed ./annotation/plasmodium-0998.xml\n",
+ "Fixed ./annotation/plasmodium-1159.xml\n",
+ "Fixed ./annotation/plasmodium-2455.xml\n",
+ "Fixed ./annotation/plasmodium-2047.xml\n",
+ "Fixed ./annotation/plasmodium-1943.xml\n",
+ "Fixed ./annotation/plasmodium-0755.xml\n",
+ "Fixed ./annotation/plasmodium-1030.xml\n",
+ "Fixed ./annotation/plasmodium-0782.xml\n",
+ "Fixed ./annotation/plasmodium-1262.xml\n",
+ "Fixed ./annotation/plasmodium-1760.xml\n",
+ "Fixed ./annotation/plasmodium-0386.xml\n",
+ "Fixed ./annotation/plasmodium-1203.xml\n",
+ "Fixed ./annotation/plasmodium-0049.xml\n",
+ "Fixed ./annotation/plasmodium-2627.xml\n",
+ "Fixed ./annotation/plasmodium-1583.xml\n",
+ "Fixed ./annotation/plasmodium-1087.xml\n",
+ "Fixed ./annotation/plasmodium-1074.xml\n",
+ "Fixed ./annotation/plasmodium-2289.xml\n",
+ "Fixed ./annotation/plasmodium-2300.xml\n",
+ "Fixed ./annotation/plasmodium-2477.xml\n",
+ "Fixed ./annotation/plasmodium-1516.xml\n",
+ "Fixed ./annotation/plasmodium-0257.xml\n",
+ "Fixed ./annotation/plasmodium-0585.xml\n",
+ "Fixed ./annotation/plasmodium-2682.xml\n",
+ "Fixed ./annotation/plasmodium-2474.xml\n",
+ "Fixed ./annotation/plasmodium-2052.xml\n",
+ "Fixed ./annotation/plasmodium-0105.xml\n",
+ "Fixed ./annotation/plasmodium-2523.xml\n",
+ "Fixed ./annotation/plasmodium-0918.xml\n",
+ "Fixed ./annotation/plasmodium-0065.xml\n",
+ "Fixed ./annotation/plasmodium-2125.xml\n",
+ "Fixed ./annotation/plasmodium-0930.xml\n",
+ "Fixed ./annotation/plasmodium-0603.xml\n",
+ "Fixed ./annotation/plasmodium-1950.xml\n",
+ "Fixed ./annotation/plasmodium-2015.xml\n",
+ "Fixed ./annotation/plasmodium-2203.xml\n",
+ "Fixed ./annotation/plasmodium-2304.xml\n",
+ "Fixed ./annotation/plasmodium-0664.xml\n",
+ "Fixed ./annotation/plasmodium-1770.xml\n",
+ "Fixed ./annotation/plasmodium-0861.xml\n",
+ "Fixed ./annotation/plasmodium-1205.xml\n",
+ "Fixed ./annotation/plasmodium-1817.xml\n",
+ "Fixed ./annotation/plasmodium-1991.xml\n",
+ "Fixed ./annotation/plasmodium-2567.xml\n",
+ "Fixed ./annotation/plasmodium-2515.xml\n",
+ "Fixed ./annotation/plasmodium-2123.xml\n",
+ "Fixed ./annotation/plasmodium-0704.xml\n",
+ "Fixed ./annotation/plasmodium-2692.xml\n",
+ "Fixed ./annotation/plasmodium-0341.xml\n",
+ "Fixed ./annotation/plasmodium-0964.xml\n",
+ "Fixed ./annotation/plasmodium-0340.xml\n",
+ "Fixed ./annotation/plasmodium-0292.xml\n",
+ "Fixed ./annotation/plasmodium-1653.xml\n",
+ "Fixed ./annotation/plasmodium-2601.xml\n",
+ "Fixed ./annotation/plasmodium-1819.xml\n",
+ "Fixed ./annotation/plasmodium-2055.xml\n",
+ "Fixed ./annotation/plasmodium-0172.xml\n",
+ "Fixed ./annotation/plasmodium-0422.xml\n",
+ "Fixed ./annotation/plasmodium-0987.xml\n",
+ "Fixed ./annotation/plasmodium-0303.xml\n",
+ "Fixed ./annotation/plasmodium-2116.xml\n",
+ "Fixed ./annotation/plasmodium-1738.xml\n",
+ "Fixed ./annotation/plasmodium-1075.xml\n",
+ "Fixed ./annotation/plasmodium-0133.xml\n",
+ "Fixed ./annotation/plasmodium-0947.xml\n",
+ "Fixed ./annotation/plasmodium-0648.xml\n",
+ "Fixed ./annotation/plasmodium-0657.xml\n",
+ "Fixed ./annotation/plasmodium-1191.xml\n",
+ "Fixed ./annotation/plasmodium-0480.xml\n",
+ "Fixed ./annotation/plasmodium-0379.xml\n",
+ "Fixed ./annotation/plasmodium-1023.xml\n",
+ "Fixed ./annotation/plasmodium-0354.xml\n",
+ "Fixed ./annotation/plasmodium-0786.xml\n",
+ "Fixed ./annotation/plasmodium-0561.xml\n",
+ "Fixed ./annotation/plasmodium-2420.xml\n",
+ "Fixed ./annotation/plasmodium-2530.xml\n",
+ "Fixed ./annotation/plasmodium-0609.xml\n",
+ "Fixed ./annotation/plasmodium-1934.xml\n",
+ "Fixed ./annotation/plasmodium-0701.xml\n",
+ "Fixed ./annotation/plasmodium-1387.xml\n",
+ "Fixed ./annotation/plasmodium-2310.xml\n",
+ "Fixed ./annotation/plasmodium-1189.xml\n",
+ "Fixed ./annotation/plasmodium-1277.xml\n",
+ "Fixed ./annotation/plasmodium-2581.xml\n",
+ "Fixed ./annotation/plasmodium-1444.xml\n",
+ "Fixed ./annotation/plasmodium-1636.xml\n",
+ "Fixed ./annotation/plasmodium-1660.xml\n",
+ "Fixed ./annotation/plasmodium-0764.xml\n",
+ "Fixed ./annotation/plasmodium-0637.xml\n",
+ "Fixed ./annotation/plasmodium-0400.xml\n",
+ "Fixed ./annotation/plasmodium-1162.xml\n",
+ "Fixed ./annotation/plasmodium-0575.xml\n",
+ "Fixed ./annotation/plasmodium-2524.xml\n",
+ "Fixed ./annotation/plasmodium-2097.xml\n",
+ "Fixed ./annotation/plasmodium-0776.xml\n",
+ "Fixed ./annotation/plasmodium-1870.xml\n",
+ "Fixed ./annotation/plasmodium-2016.xml\n",
+ "Fixed ./annotation/plasmodium-1174.xml\n",
+ "Fixed ./annotation/plasmodium-0152.xml\n",
+ "Fixed ./annotation/plasmodium-1503.xml\n",
+ "Fixed ./annotation/plasmodium-1685.xml\n",
+ "Fixed ./annotation/plasmodium-0185.xml\n",
+ "Fixed ./annotation/plasmodium-0396.xml\n",
+ "Fixed ./annotation/plasmodium-1923.xml\n",
+ "Fixed ./annotation/plasmodium-2273.xml\n",
+ "Fixed ./annotation/plasmodium-0169.xml\n",
+ "Fixed ./annotation/plasmodium-1823.xml\n",
+ "Fixed ./annotation/plasmodium-1400.xml\n",
+ "Fixed ./annotation/plasmodium-1620.xml\n",
+ "Fixed ./annotation/plasmodium-1502.xml\n",
+ "Fixed ./annotation/plasmodium-1761.xml\n",
+ "Fixed ./annotation/plasmodium-0045.xml\n",
+ "Fixed ./annotation/plasmodium-0550.xml\n",
+ "Fixed ./annotation/plasmodium-1722.xml\n",
+ "Fixed ./annotation/plasmodium-0414.xml\n",
+ "Fixed ./annotation/plasmodium-1331.xml\n",
+ "Fixed ./annotation/plasmodium-1390.xml\n",
+ "Fixed ./annotation/plasmodium-0655.xml\n",
+ "Fixed ./annotation/plasmodium-0953.xml\n",
+ "Fixed ./annotation/plasmodium-0010.xml\n",
+ "Fixed ./annotation/plasmodium-0635.xml\n",
+ "Fixed ./annotation/plasmodium-0606.xml\n",
+ "Fixed ./annotation/plasmodium-0482.xml\n",
+ "Fixed ./annotation/plasmodium-2594.xml\n",
+ "Fixed ./annotation/plasmodium-1462.xml\n",
+ "Fixed ./annotation/plasmodium-0417.xml\n",
+ "Fixed ./annotation/plasmodium-2564.xml\n",
+ "Fixed ./annotation/plasmodium-0361.xml\n",
+ "Fixed ./annotation/plasmodium-1043.xml\n",
+ "Fixed ./annotation/plasmodium-1750.xml\n",
+ "Fixed ./annotation/plasmodium-1518.xml\n",
+ "Fixed ./annotation/plasmodium-1151.xml\n",
+ "Fixed ./annotation/plasmodium-2048.xml\n",
+ "Fixed ./annotation/plasmodium-2318.xml\n",
+ "Fixed ./annotation/plasmodium-0513.xml\n",
+ "Fixed ./annotation/plasmodium-0370.xml\n",
+ "Fixed ./annotation/plasmodium-0896.xml\n",
+ "Fixed ./annotation/plasmodium-0853.xml\n",
+ "Fixed ./annotation/plasmodium-2457.xml\n",
+ "Fixed ./annotation/plasmodium-0226.xml\n",
+ "Fixed ./annotation/plasmodium-1756.xml\n",
+ "Fixed ./annotation/plasmodium-1659.xml\n",
+ "Fixed ./annotation/plasmodium-2217.xml\n",
+ "Fixed ./annotation/plasmodium-2127.xml\n",
+ "Fixed ./annotation/plasmodium-2363.xml\n",
+ "Fixed ./annotation/plasmodium-1071.xml\n",
+ "Fixed ./annotation/plasmodium-0236.xml\n",
+ "Fixed ./annotation/plasmodium-1457.xml\n",
+ "Fixed ./annotation/plasmodium-2350.xml\n",
+ "Fixed ./annotation/plasmodium-0290.xml\n",
+ "Fixed ./annotation/plasmodium-0210.xml\n",
+ "Fixed ./annotation/plasmodium-1061.xml\n",
+ "Fixed ./annotation/plasmodium-0850.xml\n",
+ "Fixed ./annotation/plasmodium-1127.xml\n",
+ "Fixed ./annotation/plasmodium-1454.xml\n",
+ "Fixed ./annotation/plasmodium-0891.xml\n",
+ "Fixed ./annotation/plasmodium-1680.xml\n",
+ "Fixed ./annotation/plasmodium-0229.xml\n",
+ "Fixed ./annotation/plasmodium-1491.xml\n",
+ "Fixed ./annotation/plasmodium-1542.xml\n",
+ "Fixed ./annotation/plasmodium-2065.xml\n",
+ "Fixed ./annotation/plasmodium-2096.xml\n",
+ "Fixed ./annotation/plasmodium-0033.xml\n",
+ "Fixed ./annotation/plasmodium-0941.xml\n",
+ "Fixed ./annotation/plasmodium-2113.xml\n",
+ "Fixed ./annotation/plasmodium-0161.xml\n",
+ "Fixed ./annotation/plasmodium-1994.xml\n",
+ "Fixed ./annotation/plasmodium-1679.xml\n",
+ "Fixed ./annotation/plasmodium-0579.xml\n",
+ "Fixed ./annotation/plasmodium-2064.xml\n",
+ "Fixed ./annotation/plasmodium-2529.xml\n",
+ "Fixed ./annotation/plasmodium-2242.xml\n",
+ "Fixed ./annotation/plasmodium-1505.xml\n",
+ "Fixed ./annotation/plasmodium-1802.xml\n",
+ "Fixed ./annotation/plasmodium-2540.xml\n",
+ "Fixed ./annotation/plasmodium-0225.xml\n",
+ "Fixed ./annotation/plasmodium-2107.xml\n",
+ "Fixed ./annotation/plasmodium-1269.xml\n",
+ "Fixed ./annotation/plasmodium-0316.xml\n",
+ "Fixed ./annotation/plasmodium-0363.xml\n",
+ "Fixed ./annotation/plasmodium-2513.xml\n",
+ "Fixed ./annotation/plasmodium-1217.xml\n",
+ "Fixed ./annotation/plasmodium-1635.xml\n",
+ "Fixed ./annotation/plasmodium-1081.xml\n",
+ "Fixed ./annotation/plasmodium-0898.xml\n",
+ "Fixed ./annotation/plasmodium-0474.xml\n",
+ "Fixed ./annotation/plasmodium-1012.xml\n",
+ "Fixed ./annotation/plasmodium-0506.xml\n",
+ "Fixed ./annotation/plasmodium-2546.xml\n",
+ "Fixed ./annotation/plasmodium-0572.xml\n",
+ "Fixed ./annotation/plasmodium-1614.xml\n",
+ "Fixed ./annotation/plasmodium-1340.xml\n",
+ "Fixed ./annotation/plasmodium-1097.xml\n",
+ "Fixed ./annotation/plasmodium-1860.xml\n",
+ "Fixed ./annotation/plasmodium-1487.xml\n",
+ "Fixed ./annotation/plasmodium-0020.xml\n",
+ "Fixed ./annotation/plasmodium-0851.xml\n",
+ "Fixed ./annotation/plasmodium-0247.xml\n",
+ "Fixed ./annotation/plasmodium-2499.xml\n",
+ "Fixed ./annotation/plasmodium-2254.xml\n",
+ "Fixed ./annotation/plasmodium-1571.xml\n",
+ "Fixed ./annotation/plasmodium-1535.xml\n",
+ "Fixed ./annotation/plasmodium-1534.xml\n",
+ "Fixed ./annotation/plasmodium-1172.xml\n",
+ "Fixed ./annotation/plasmodium-1212.xml\n",
+ "Fixed ./annotation/plasmodium-2391.xml\n",
+ "Fixed ./annotation/plasmodium-0526.xml\n",
+ "Fixed ./annotation/plasmodium-1131.xml\n",
+ "Fixed ./annotation/plasmodium-0524.xml\n",
+ "Fixed ./annotation/plasmodium-0154.xml\n",
+ "Fixed ./annotation/plasmodium-1800.xml\n",
+ "Fixed ./annotation/plasmodium-2360.xml\n",
+ "Fixed ./annotation/plasmodium-0897.xml\n",
+ "Fixed ./annotation/plasmodium-2283.xml\n",
+ "Fixed ./annotation/plasmodium-0558.xml\n",
+ "Fixed ./annotation/plasmodium-1154.xml\n",
+ "Fixed ./annotation/plasmodium-0618.xml\n",
+ "Fixed ./annotation/plasmodium-2394.xml\n",
+ "Fixed ./annotation/plasmodium-0757.xml\n",
+ "Fixed ./annotation/plasmodium-0487.xml\n",
+ "Fixed ./annotation/plasmodium-2531.xml\n",
+ "Fixed ./annotation/plasmodium-1213.xml\n",
+ "Fixed ./annotation/plasmodium-1235.xml\n",
+ "Fixed ./annotation/plasmodium-1925.xml\n",
+ "Fixed ./annotation/plasmodium-1560.xml\n",
+ "Fixed ./annotation/plasmodium-2331.xml\n",
+ "Fixed ./annotation/plasmodium-1992.xml\n",
+ "Fixed ./annotation/plasmodium-2444.xml\n",
+ "Fixed ./annotation/plasmodium-2402.xml\n",
+ "Fixed ./annotation/plasmodium-1998.xml\n",
+ "Fixed ./annotation/plasmodium-1276.xml\n",
+ "Fixed ./annotation/plasmodium-0943.xml\n",
+ "Fixed ./annotation/plasmodium-1020.xml\n",
+ "Fixed ./annotation/plasmodium-0860.xml\n",
+ "Fixed ./annotation/plasmodium-1416.xml\n",
+ "Fixed ./annotation/plasmodium-0838.xml\n",
+ "Fixed ./annotation/plasmodium-2401.xml\n",
+ "Fixed ./annotation/plasmodium-1879.xml\n",
+ "Fixed ./annotation/plasmodium-0098.xml\n",
+ "Fixed ./annotation/plasmodium-2553.xml\n",
+ "Fixed ./annotation/plasmodium-0266.xml\n",
+ "Fixed ./annotation/plasmodium-1787.xml\n",
+ "Fixed ./annotation/plasmodium-1687.xml\n",
+ "Fixed ./annotation/plasmodium-1751.xml\n",
+ "Fixed ./annotation/plasmodium-0904.xml\n",
+ "Fixed ./annotation/plasmodium-1589.xml\n",
+ "Fixed ./annotation/plasmodium-1980.xml\n",
+ "Fixed ./annotation/plasmodium-2182.xml\n",
+ "Fixed ./annotation/plasmodium-2054.xml\n",
+ "Fixed ./annotation/plasmodium-1686.xml\n",
+ "Fixed ./annotation/plasmodium-2399.xml\n",
+ "Fixed ./annotation/plasmodium-2023.xml\n",
+ "Fixed ./annotation/plasmodium-0397.xml\n",
+ "Fixed ./annotation/plasmodium-2049.xml\n",
+ "Fixed ./annotation/plasmodium-0102.xml\n",
+ "Fixed ./annotation/plasmodium-0552.xml\n",
+ "Fixed ./annotation/plasmodium-0660.xml\n",
+ "Fixed ./annotation/plasmodium-0360.xml\n",
+ "Fixed ./annotation/plasmodium-2610.xml\n",
+ "Fixed ./annotation/plasmodium-0495.xml\n",
+ "Fixed ./annotation/plasmodium-0345.xml\n",
+ "Fixed ./annotation/plasmodium-1790.xml\n",
+ "Fixed ./annotation/plasmodium-2585.xml\n",
+ "Fixed ./annotation/plasmodium-1280.xml\n",
+ "Fixed ./annotation/plasmodium-1978.xml\n",
+ "Fixed ./annotation/plasmodium-1003.xml\n",
+ "Fixed ./annotation/plasmodium-1476.xml\n",
+ "Fixed ./annotation/plasmodium-2025.xml\n",
+ "Fixed ./annotation/plasmodium-1420.xml\n",
+ "Fixed ./annotation/plasmodium-2247.xml\n",
+ "Fixed ./annotation/plasmodium-0393.xml\n",
+ "Fixed ./annotation/plasmodium-2260.xml\n",
+ "Fixed ./annotation/plasmodium-0464.xml\n",
+ "Fixed ./annotation/plasmodium-1481.xml\n",
+ "Fixed ./annotation/plasmodium-1964.xml\n",
+ "Fixed ./annotation/plasmodium-0170.xml\n",
+ "Fixed ./annotation/plasmodium-0401.xml\n",
+ "Fixed ./annotation/plasmodium-1940.xml\n",
+ "Fixed ./annotation/plasmodium-0006.xml\n",
+ "Fixed ./annotation/plasmodium-2670.xml\n",
+ "Fixed ./annotation/plasmodium-1544.xml\n",
+ "Fixed ./annotation/plasmodium-1842.xml\n",
+ "Fixed ./annotation/plasmodium-2387.xml\n",
+ "Fixed ./annotation/plasmodium-2007.xml\n",
+ "Fixed ./annotation/plasmodium-0625.xml\n",
+ "Fixed ./annotation/plasmodium-0307.xml\n",
+ "Fixed ./annotation/plasmodium-1651.xml\n",
+ "Fixed ./annotation/plasmodium-1084.xml\n",
+ "Fixed ./annotation/plasmodium-0217.xml\n",
+ "Fixed ./annotation/plasmodium-1811.xml\n",
+ "Fixed ./annotation/plasmodium-0171.xml\n",
+ "Fixed ./annotation/plasmodium-1775.xml\n",
+ "Fixed ./annotation/plasmodium-1778.xml\n",
+ "Fixed ./annotation/plasmodium-1529.xml\n",
+ "Fixed ./annotation/plasmodium-0418.xml\n",
+ "Fixed ./annotation/plasmodium-1266.xml\n",
+ "Fixed ./annotation/plasmodium-1268.xml\n",
+ "Fixed ./annotation/plasmodium-2485.xml\n",
+ "Fixed ./annotation/plasmodium-0792.xml\n",
+ "Fixed ./annotation/plasmodium-1465.xml\n",
+ "Fixed ./annotation/plasmodium-1509.xml\n",
+ "Fixed ./annotation/plasmodium-1046.xml\n",
+ "Fixed ./annotation/plasmodium-1029.xml\n",
+ "Fixed ./annotation/plasmodium-0878.xml\n",
+ "Fixed ./annotation/plasmodium-2685.xml\n",
+ "Fixed ./annotation/plasmodium-2675.xml\n",
+ "Fixed ./annotation/plasmodium-1206.xml\n",
+ "Fixed ./annotation/plasmodium-1346.xml\n",
+ "Fixed ./annotation/plasmodium-2625.xml\n",
+ "Fixed ./annotation/plasmodium-1070.xml\n",
+ "Fixed ./annotation/plasmodium-1260.xml\n",
+ "Fixed ./annotation/plasmodium-2012.xml\n",
+ "Fixed ./annotation/plasmodium-2294.xml\n",
+ "Fixed ./annotation/plasmodium-2042.xml\n",
+ "Fixed ./annotation/plasmodium-0134.xml\n",
+ "Fixed ./annotation/plasmodium-0310.xml\n",
+ "Fixed ./annotation/plasmodium-2094.xml\n",
+ "Fixed ./annotation/plasmodium-1504.xml\n",
+ "Fixed ./annotation/plasmodium-0406.xml\n",
+ "Fixed ./annotation/plasmodium-0274.xml\n",
+ "Fixed ./annotation/plasmodium-1460.xml\n",
+ "Fixed ./annotation/plasmodium-1732.xml\n",
+ "Fixed ./annotation/plasmodium-1156.xml\n",
+ "Fixed ./annotation/plasmodium-0771.xml\n",
+ "Fixed ./annotation/plasmodium-0556.xml\n",
+ "Fixed ./annotation/plasmodium-0682.xml\n",
+ "Fixed ./annotation/plasmodium-0047.xml\n",
+ "Fixed ./annotation/plasmodium-2409.xml\n",
+ "Fixed ./annotation/plasmodium-0063.xml\n",
+ "Fixed ./annotation/plasmodium-2002.xml\n",
+ "Fixed ./annotation/plasmodium-0230.xml\n",
+ "Fixed ./annotation/plasmodium-1001.xml\n",
+ "Fixed ./annotation/plasmodium-2589.xml\n",
+ "Fixed ./annotation/plasmodium-2470.xml\n",
+ "Fixed ./annotation/plasmodium-1026.xml\n",
+ "Fixed ./annotation/plasmodium-2087.xml\n",
+ "Fixed ./annotation/plasmodium-1818.xml\n",
+ "Fixed ./annotation/plasmodium-1497.xml\n",
+ "Fixed ./annotation/plasmodium-0431.xml\n",
+ "Fixed ./annotation/plasmodium-1149.xml\n",
+ "Fixed ./annotation/plasmodium-1969.xml\n",
+ "Fixed ./annotation/plasmodium-2122.xml\n",
+ "Fixed ./annotation/plasmodium-1580.xml\n",
+ "Fixed ./annotation/plasmodium-1545.xml\n",
+ "Fixed ./annotation/plasmodium-2584.xml\n",
+ "Fixed ./annotation/plasmodium-0592.xml\n",
+ "Fixed ./annotation/plasmodium-1974.xml\n",
+ "Fixed ./annotation/plasmodium-1376.xml\n",
+ "Fixed ./annotation/plasmodium-1629.xml\n",
+ "Fixed ./annotation/plasmodium-0733.xml\n",
+ "Fixed ./annotation/plasmodium-2210.xml\n",
+ "Fixed ./annotation/plasmodium-1791.xml\n",
+ "Fixed ./annotation/plasmodium-0470.xml\n",
+ "Fixed ./annotation/plasmodium-2081.xml\n",
+ "Fixed ./annotation/plasmodium-1899.xml\n",
+ "Fixed ./annotation/plasmodium-2465.xml\n",
+ "Fixed ./annotation/plasmodium-0654.xml\n",
+ "Fixed ./annotation/plasmodium-0982.xml\n",
+ "Fixed ./annotation/plasmodium-1611.xml\n",
+ "Fixed ./annotation/plasmodium-0564.xml\n",
+ "Fixed ./annotation/plasmodium-0723.xml\n",
+ "Fixed ./annotation/plasmodium-0260.xml\n",
+ "Fixed ./annotation/plasmodium-2614.xml\n",
+ "Fixed ./annotation/plasmodium-1949.xml\n",
+ "Fixed ./annotation/plasmodium-1885.xml\n",
+ "Fixed ./annotation/plasmodium-0993.xml\n",
+ "Fixed ./annotation/plasmodium-1453.xml\n",
+ "Fixed ./annotation/plasmodium-2019.xml\n",
+ "Fixed ./annotation/plasmodium-1886.xml\n",
+ "Fixed ./annotation/plasmodium-1282.xml\n",
+ "Fixed ./annotation/plasmodium-2422.xml\n",
+ "Fixed ./annotation/plasmodium-1419.xml\n",
+ "Fixed ./annotation/plasmodium-0183.xml\n",
+ "Fixed ./annotation/plasmodium-0568.xml\n",
+ "Fixed ./annotation/plasmodium-1590.xml\n",
+ "Fixed ./annotation/plasmodium-0258.xml\n",
+ "Fixed ./annotation/plasmodium-0500.xml\n",
+ "Fixed ./annotation/plasmodium-1404.xml\n",
+ "Fixed ./annotation/plasmodium-2293.xml\n",
+ "Fixed ./annotation/plasmodium-0675.xml\n",
+ "Fixed ./annotation/plasmodium-1792.xml\n",
+ "Fixed ./annotation/plasmodium-2005.xml\n",
+ "Fixed ./annotation/plasmodium-2569.xml\n",
+ "Fixed ./annotation/plasmodium-0567.xml\n",
+ "Fixed ./annotation/plasmodium-1639.xml\n",
+ "Fixed ./annotation/plasmodium-2077.xml\n",
+ "Fixed ./annotation/plasmodium-0528.xml\n",
+ "Fixed ./annotation/plasmodium-0141.xml\n",
+ "Fixed ./annotation/plasmodium-0570.xml\n",
+ "Fixed ./annotation/plasmodium-0503.xml\n",
+ "Fixed ./annotation/plasmodium-2456.xml\n",
+ "Fixed ./annotation/plasmodium-0817.xml\n",
+ "Fixed ./annotation/plasmodium-0543.xml\n",
+ "Fixed ./annotation/plasmodium-1904.xml\n",
+ "Fixed ./annotation/plasmodium-0536.xml\n",
+ "Fixed ./annotation/plasmodium-0365.xml\n",
+ "Fixed ./annotation/plasmodium-2317.xml\n",
+ "Fixed ./annotation/plasmodium-1278.xml\n",
+ "Fixed ./annotation/plasmodium-1595.xml\n",
+ "Fixed ./annotation/plasmodium-1808.xml\n",
+ "Fixed ./annotation/plasmodium-2416.xml\n",
+ "Fixed ./annotation/plasmodium-0822.xml\n",
+ "Fixed ./annotation/plasmodium-1967.xml\n",
+ "Fixed ./annotation/plasmodium-0742.xml\n",
+ "Fixed ./annotation/plasmodium-1829.xml\n",
+ "Fixed ./annotation/plasmodium-0168.xml\n",
+ "Fixed ./annotation/plasmodium-1455.xml\n",
+ "Fixed ./annotation/plasmodium-1496.xml\n",
+ "Fixed ./annotation/plasmodium-0832.xml\n",
+ "Fixed ./annotation/plasmodium-1078.xml\n",
+ "Fixed ./annotation/plasmodium-2105.xml\n",
+ "Fixed ./annotation/plasmodium-1409.xml\n",
+ "Fixed ./annotation/plasmodium-0578.xml\n",
+ "Fixed ./annotation/plasmodium-2286.xml\n",
+ "Fixed ./annotation/plasmodium-2321.xml\n",
+ "Fixed ./annotation/plasmodium-1550.xml\n",
+ "Fixed ./annotation/plasmodium-1438.xml\n",
+ "Fixed ./annotation/plasmodium-1729.xml\n",
+ "Fixed ./annotation/plasmodium-0351.xml\n",
+ "Fixed ./annotation/plasmodium-2061.xml\n",
+ "Fixed ./annotation/plasmodium-1434.xml\n",
+ "Fixed ./annotation/plasmodium-2648.xml\n",
+ "Fixed ./annotation/plasmodium-1025.xml\n",
+ "Fixed ./annotation/plasmodium-0962.xml\n",
+ "Fixed ./annotation/plasmodium-1045.xml\n",
+ "Fixed ./annotation/plasmodium-2449.xml\n",
+ "Fixed ./annotation/plasmodium-1309.xml\n",
+ "Fixed ./annotation/plasmodium-1701.xml\n",
+ "Fixed ./annotation/plasmodium-2413.xml\n",
+ "Fixed ./annotation/plasmodium-1710.xml\n",
+ "Fixed ./annotation/plasmodium-1888.xml\n",
+ "Fixed ./annotation/plasmodium-2248.xml\n",
+ "Fixed ./annotation/plasmodium-0199.xml\n",
+ "Fixed ./annotation/plasmodium-2686.xml\n",
+ "Fixed ./annotation/plasmodium-0276.xml\n",
+ "Fixed ./annotation/plasmodium-2223.xml\n",
+ "Fixed ./annotation/plasmodium-1901.xml\n",
+ "Fixed ./annotation/plasmodium-1252.xml\n",
+ "Fixed ./annotation/plasmodium-2486.xml\n",
+ "Fixed ./annotation/plasmodium-1015.xml\n",
+ "Fixed ./annotation/plasmodium-0044.xml\n",
+ "Fixed ./annotation/plasmodium-0879.xml\n",
+ "Fixed ./annotation/plasmodium-2643.xml\n",
+ "Fixed ./annotation/plasmodium-0900.xml\n",
+ "Fixed ./annotation/plasmodium-1351.xml\n",
+ "Fixed ./annotation/plasmodium-1176.xml\n",
+ "Fixed ./annotation/plasmodium-1882.xml\n",
+ "Fixed ./annotation/plasmodium-1741.xml\n",
+ "Fixed ./annotation/plasmodium-0059.xml\n",
+ "Fixed ./annotation/plasmodium-1863.xml\n",
+ "Fixed ./annotation/plasmodium-0830.xml\n",
+ "Fixed ./annotation/plasmodium-0043.xml\n",
+ "Fixed ./annotation/plasmodium-0343.xml\n",
+ "Fixed ./annotation/plasmodium-2179.xml\n",
+ "Fixed ./annotation/plasmodium-0223.xml\n",
+ "Fixed ./annotation/plasmodium-0001.xml\n",
+ "Fixed ./annotation/plasmodium-0302.xml\n",
+ "Fixed ./annotation/plasmodium-2450.xml\n",
+ "Fixed ./annotation/plasmodium-0390.xml\n",
+ "Fixed ./annotation/plasmodium-1288.xml\n",
+ "Fixed ./annotation/plasmodium-1255.xml\n",
+ "Fixed ./annotation/plasmodium-2068.xml\n",
+ "Fixed ./annotation/plasmodium-2152.xml\n",
+ "Fixed ./annotation/plasmodium-2197.xml\n",
+ "Fixed ./annotation/plasmodium-2151.xml\n",
+ "Fixed ./annotation/plasmodium-1801.xml\n",
+ "Fixed ./annotation/plasmodium-0730.xml\n",
+ "Fixed ./annotation/plasmodium-0933.xml\n",
+ "Fixed ./annotation/plasmodium-1258.xml\n",
+ "Fixed ./annotation/plasmodium-1576.xml\n",
+ "Fixed ./annotation/plasmodium-0046.xml\n",
+ "Fixed ./annotation/plasmodium-0647.xml\n",
+ "Fixed ./annotation/plasmodium-0951.xml\n",
+ "Fixed ./annotation/plasmodium-2342.xml\n",
+ "Fixed ./annotation/plasmodium-2153.xml\n",
+ "Fixed ./annotation/plasmodium-1194.xml\n",
+ "Fixed ./annotation/plasmodium-1692.xml\n",
+ "Fixed ./annotation/plasmodium-0082.xml\n",
+ "Fixed ./annotation/plasmodium-0284.xml\n",
+ "Fixed ./annotation/plasmodium-2271.xml\n",
+ "Fixed ./annotation/plasmodium-2103.xml\n",
+ "Fixed ./annotation/plasmodium-0825.xml\n",
+ "Fixed ./annotation/plasmodium-1319.xml\n",
+ "Fixed ./annotation/plasmodium-2244.xml\n",
+ "Fixed ./annotation/plasmodium-0713.xml\n",
+ "Fixed ./annotation/plasmodium-1207.xml\n",
+ "Fixed ./annotation/plasmodium-0425.xml\n",
+ "Fixed ./annotation/plasmodium-1694.xml\n",
+ "Fixed ./annotation/plasmodium-1512.xml\n",
+ "Fixed ./annotation/plasmodium-0917.xml\n",
+ "Fixed ./annotation/plasmodium-1369.xml\n",
+ "Fixed ./annotation/plasmodium-1439.xml\n",
+ "Fixed ./annotation/plasmodium-1039.xml\n",
+ "Fixed ./annotation/plasmodium-0902.xml\n",
+ "Fixed ./annotation/plasmodium-0180.xml\n",
+ "Fixed ./annotation/plasmodium-1809.xml\n",
+ "Fixed ./annotation/plasmodium-1867.xml\n",
+ "Fixed ./annotation/plasmodium-2253.xml\n",
+ "Fixed ./annotation/plasmodium-0040.xml\n",
+ "Fixed ./annotation/plasmodium-0894.xml\n",
+ "Fixed ./annotation/plasmodium-1776.xml\n",
+ "Fixed ./annotation/plasmodium-2188.xml\n",
+ "Fixed ./annotation/plasmodium-2303.xml\n",
+ "Fixed ./annotation/plasmodium-0319.xml\n",
+ "Fixed ./annotation/plasmodium-2322.xml\n",
+ "Fixed ./annotation/plasmodium-0697.xml\n",
+ "Fixed ./annotation/plasmodium-2478.xml\n",
+ "Fixed ./annotation/plasmodium-2551.xml\n",
+ "Fixed ./annotation/plasmodium-0412.xml\n",
+ "Fixed ./annotation/plasmodium-0511.xml\n",
+ "Fixed ./annotation/plasmodium-1762.xml\n",
+ "Fixed ./annotation/plasmodium-0385.xml\n",
+ "Fixed ./annotation/plasmodium-1965.xml\n",
+ "Fixed ./annotation/plasmodium-2462.xml\n",
+ "Fixed ./annotation/plasmodium-1161.xml\n",
+ "Fixed ./annotation/plasmodium-0317.xml\n",
+ "Fixed ./annotation/plasmodium-1241.xml\n",
+ "Fixed ./annotation/plasmodium-0388.xml\n",
+ "Fixed ./annotation/plasmodium-2547.xml\n",
+ "Fixed ./annotation/plasmodium-2557.xml\n",
+ "Fixed ./annotation/plasmodium-0574.xml\n",
+ "Fixed ./annotation/plasmodium-1196.xml\n",
+ "Fixed ./annotation/plasmodium-0671.xml\n",
+ "Fixed ./annotation/plasmodium-0758.xml\n",
+ "Fixed ./annotation/plasmodium-2040.xml\n",
+ "Fixed ./annotation/plasmodium-2157.xml\n",
+ "Fixed ./annotation/plasmodium-2332.xml\n",
+ "Fixed ./annotation/plasmodium-0544.xml\n",
+ "Fixed ./annotation/plasmodium-2410.xml\n",
+ "Fixed ./annotation/plasmodium-1926.xml\n",
+ "Fixed ./annotation/plasmodium-0224.xml\n",
+ "Fixed ./annotation/plasmodium-0812.xml\n",
+ "Fixed ./annotation/plasmodium-1064.xml\n",
+ "Fixed ./annotation/plasmodium-1794.xml\n",
+ "Fixed ./annotation/plasmodium-2467.xml\n",
+ "Fixed ./annotation/plasmodium-1298.xml\n",
+ "Fixed ./annotation/plasmodium-2174.xml\n",
+ "Fixed ./annotation/plasmodium-0291.xml\n",
+ "Fixed ./annotation/plasmodium-1749.xml\n",
+ "Fixed ./annotation/plasmodium-0375.xml\n",
+ "Fixed ./annotation/plasmodium-2492.xml\n",
+ "Fixed ./annotation/plasmodium-2090.xml\n",
+ "Fixed ./annotation/plasmodium-1040.xml\n",
+ "Fixed ./annotation/plasmodium-0777.xml\n",
+ "Fixed ./annotation/plasmodium-0447.xml\n",
+ "Fixed ./annotation/plasmodium-1668.xml\n",
+ "Fixed ./annotation/plasmodium-0753.xml\n",
+ "Fixed ./annotation/plasmodium-0884.xml\n",
+ "Fixed ./annotation/plasmodium-1158.xml\n",
+ "Fixed ./annotation/plasmodium-0240.xml\n",
+ "Fixed ./annotation/plasmodium-1392.xml\n",
+ "Fixed ./annotation/plasmodium-0389.xml\n",
+ "Fixed ./annotation/plasmodium-1644.xml\n",
+ "Fixed ./annotation/plasmodium-1900.xml\n",
+ "Fixed ./annotation/plasmodium-0734.xml\n",
+ "Fixed ./annotation/plasmodium-0712.xml\n",
+ "Fixed ./annotation/plasmodium-1383.xml\n",
+ "Fixed ./annotation/plasmodium-2328.xml\n",
+ "Fixed ./annotation/plasmodium-1006.xml\n",
+ "Fixed ./annotation/plasmodium-2436.xml\n",
+ "Fixed ./annotation/plasmodium-1728.xml\n",
+ "Fixed ./annotation/plasmodium-0394.xml\n",
+ "Fixed ./annotation/plasmodium-1828.xml\n",
+ "Fixed ./annotation/plasmodium-1759.xml\n",
+ "Fixed ./annotation/plasmodium-1946.xml\n",
+ "Fixed ./annotation/plasmodium-0078.xml\n",
+ "Fixed ./annotation/plasmodium-0858.xml\n",
+ "Fixed ./annotation/plasmodium-0099.xml\n",
+ "Fixed ./annotation/plasmodium-0426.xml\n",
+ "Fixed ./annotation/plasmodium-1887.xml\n",
+ "Fixed ./annotation/plasmodium-2549.xml\n",
+ "Fixed ./annotation/plasmodium-1604.xml\n",
+ "Fixed ./annotation/plasmodium-0863.xml\n",
+ "Fixed ./annotation/plasmodium-1825.xml\n",
+ "Fixed ./annotation/plasmodium-1436.xml\n",
+ "Fixed ./annotation/plasmodium-2390.xml\n",
+ "Fixed ./annotation/plasmodium-1858.xml\n",
+ "Fixed ./annotation/plasmodium-2282.xml\n",
+ "Fixed ./annotation/plasmodium-1107.xml\n",
+ "Fixed ./annotation/plasmodium-0668.xml\n",
+ "Fixed ./annotation/plasmodium-2098.xml\n",
+ "Fixed ./annotation/plasmodium-2649.xml\n",
+ "Fixed ./annotation/plasmodium-1662.xml\n",
+ "Fixed ./annotation/plasmodium-0068.xml\n",
+ "Fixed ./annotation/plasmodium-2662.xml\n",
+ "Fixed ./annotation/plasmodium-1320.xml\n",
+ "Fixed ./annotation/plasmodium-0364.xml\n",
+ "Fixed ./annotation/plasmodium-1057.xml\n",
+ "Fixed ./annotation/plasmodium-0745.xml\n",
+ "Fixed ./annotation/plasmodium-0104.xml\n",
+ "Fixed ./annotation/plasmodium-1312.xml\n",
+ "Fixed ./annotation/plasmodium-1321.xml\n",
+ "Fixed ./annotation/plasmodium-2029.xml\n",
+ "Fixed ./annotation/plasmodium-0094.xml\n",
+ "Fixed ./annotation/plasmodium-1957.xml\n",
+ "Fixed ./annotation/plasmodium-1024.xml\n",
+ "Fixed ./annotation/plasmodium-1857.xml\n",
+ "Fixed ./annotation/plasmodium-0960.xml\n",
+ "Fixed ./annotation/plasmodium-2172.xml\n",
+ "Fixed ./annotation/plasmodium-2543.xml\n",
+ "Fixed ./annotation/plasmodium-1618.xml\n",
+ "Fixed ./annotation/plasmodium-1816.xml\n",
+ "Fixed ./annotation/plasmodium-1773.xml\n",
+ "Fixed ./annotation/plasmodium-1218.xml\n",
+ "Fixed ./annotation/plasmodium-1175.xml\n",
+ "Fixed ./annotation/plasmodium-0027.xml\n",
+ "Fixed ./annotation/plasmodium-2632.xml\n",
+ "Fixed ./annotation/plasmodium-0644.xml\n",
+ "Fixed ./annotation/plasmodium-2169.xml\n",
+ "Fixed ./annotation/plasmodium-0030.xml\n",
+ "Fixed ./annotation/plasmodium-2657.xml\n",
+ "Fixed ./annotation/plasmodium-0691.xml\n",
+ "Fixed ./annotation/plasmodium-2544.xml\n",
+ "Fixed ./annotation/plasmodium-0814.xml\n",
+ "Fixed ./annotation/plasmodium-0546.xml\n",
+ "Fixed ./annotation/plasmodium-1832.xml\n",
+ "Fixed ./annotation/plasmodium-2039.xml\n",
+ "Fixed ./annotation/plasmodium-0084.xml\n",
+ "Fixed ./annotation/plasmodium-1432.xml\n",
+ "Fixed ./annotation/plasmodium-2095.xml\n",
+ "Fixed ./annotation/plasmodium-0601.xml\n",
+ "Fixed ./annotation/plasmodium-0715.xml\n",
+ "Fixed ./annotation/plasmodium-1230.xml\n",
+ "Fixed ./annotation/plasmodium-2022.xml\n",
+ "Fixed ./annotation/plasmodium-1559.xml\n",
+ "Fixed ./annotation/plasmodium-2165.xml\n",
+ "Fixed ./annotation/plasmodium-1326.xml\n",
+ "Fixed ./annotation/plasmodium-0296.xml\n",
+ "Fixed ./annotation/plasmodium-0828.xml\n",
+ "Fixed ./annotation/plasmodium-2384.xml\n",
+ "Fixed ./annotation/plasmodium-0800.xml\n",
+ "Fixed ./annotation/plasmodium-2198.xml\n",
+ "Fixed ./annotation/plasmodium-0736.xml\n",
+ "Fixed ./annotation/plasmodium-1125.xml\n",
+ "Fixed ./annotation/plasmodium-1777.xml\n",
+ "Fixed ./annotation/plasmodium-2232.xml\n",
+ "Fixed ./annotation/plasmodium-2134.xml\n",
+ "Fixed ./annotation/plasmodium-1554.xml\n",
+ "Fixed ./annotation/plasmodium-1945.xml\n",
+ "Fixed ./annotation/plasmodium-1868.xml\n",
+ "Fixed ./annotation/plasmodium-1271.xml\n",
+ "Fixed ./annotation/plasmodium-0109.xml\n",
+ "Fixed ./annotation/plasmodium-1042.xml\n",
+ "Fixed ./annotation/plasmodium-2086.xml\n",
+ "Fixed ./annotation/plasmodium-2140.xml\n",
+ "Fixed ./annotation/plasmodium-1124.xml\n",
+ "Fixed ./annotation/plasmodium-0372.xml\n",
+ "Fixed ./annotation/plasmodium-0113.xml\n",
+ "Fixed ./annotation/plasmodium-2588.xml\n",
+ "Fixed ./annotation/plasmodium-1596.xml\n",
+ "Fixed ./annotation/plasmodium-1892.xml\n",
+ "Fixed ./annotation/plasmodium-1328.xml\n",
+ "Fixed ./annotation/plasmodium-2241.xml\n",
+ "Fixed ./annotation/plasmodium-2135.xml\n",
+ "Fixed ./annotation/plasmodium-2088.xml\n",
+ "Fixed ./annotation/plasmodium-1889.xml\n",
+ "Fixed ./annotation/plasmodium-0706.xml\n",
+ "Fixed ./annotation/plasmodium-2226.xml\n",
+ "Fixed ./annotation/plasmodium-0123.xml\n",
+ "Fixed ./annotation/plasmodium-0344.xml\n",
+ "Fixed ./annotation/plasmodium-1588.xml\n",
+ "Fixed ./annotation/plasmodium-0627.xml\n",
+ "Fixed ./annotation/plasmodium-1849.xml\n",
+ "Fixed ./annotation/plasmodium-0186.xml\n",
+ "Fixed ./annotation/plasmodium-0693.xml\n",
+ "Fixed ./annotation/plasmodium-2147.xml\n",
+ "Fixed ./annotation/plasmodium-0631.xml\n",
+ "Fixed ./annotation/plasmodium-1643.xml\n",
+ "Fixed ./annotation/plasmodium-0145.xml\n",
+ "Fixed ./annotation/plasmodium-0309.xml\n",
+ "Fixed ./annotation/plasmodium-2671.xml\n",
+ "Fixed ./annotation/plasmodium-0916.xml\n",
+ "Fixed ./annotation/plasmodium-0846.xml\n",
+ "Fixed ./annotation/plasmodium-1726.xml\n",
+ "Fixed ./annotation/plasmodium-0743.xml\n",
+ "Fixed ./annotation/plasmodium-2573.xml\n",
+ "Fixed ./annotation/plasmodium-1263.xml\n",
+ "Fixed ./annotation/plasmodium-0628.xml\n",
+ "Fixed ./annotation/plasmodium-1520.xml\n",
+ "Fixed ./annotation/plasmodium-0887.xml\n",
+ "Fixed ./annotation/plasmodium-0358.xml\n",
+ "Fixed ./annotation/plasmodium-1976.xml\n",
+ "Fixed ./annotation/plasmodium-1219.xml\n",
+ "Fixed ./annotation/plasmodium-2621.xml\n",
+ "Fixed ./annotation/plasmodium-1291.xml\n",
+ "Fixed ./annotation/plasmodium-2574.xml\n",
+ "Fixed ./annotation/plasmodium-2583.xml\n",
+ "Fixed ./annotation/plasmodium-0952.xml\n",
+ "Fixed ./annotation/plasmodium-2497.xml\n",
+ "Fixed ./annotation/plasmodium-1335.xml\n",
+ "Fixed ./annotation/plasmodium-0695.xml\n",
+ "Fixed ./annotation/plasmodium-0548.xml\n",
+ "Fixed ./annotation/plasmodium-0542.xml\n",
+ "Fixed ./annotation/plasmodium-0944.xml\n",
+ "Fixed ./annotation/plasmodium-1166.xml\n",
+ "Fixed ./annotation/plasmodium-1594.xml\n",
+ "Fixed ./annotation/plasmodium-0980.xml\n",
+ "Fixed ./annotation/plasmodium-1578.xml\n",
+ "Fixed ./annotation/plasmodium-0159.xml\n",
+ "Fixed ./annotation/plasmodium-1543.xml\n",
+ "Fixed ./annotation/plasmodium-2407.xml\n",
+ "Fixed ./annotation/plasmodium-1806.xml\n",
+ "Fixed ./annotation/plasmodium-1037.xml\n",
+ "Fixed ./annotation/plasmodium-2672.xml\n",
+ "Fixed ./annotation/plasmodium-1385.xml\n",
+ "Fixed ./annotation/plasmodium-0081.xml\n",
+ "Fixed ./annotation/plasmodium-0182.xml\n",
+ "Fixed ./annotation/plasmodium-2451.xml\n",
+ "Fixed ./annotation/plasmodium-0029.xml\n",
+ "Fixed ./annotation/plasmodium-0189.xml\n",
+ "Fixed ./annotation/plasmodium-2453.xml\n",
+ "Fixed ./annotation/plasmodium-0157.xml\n",
+ "Fixed ./annotation/plasmodium-2417.xml\n",
+ "Fixed ./annotation/plasmodium-0395.xml\n",
+ "Fixed ./annotation/plasmodium-1018.xml\n",
+ "Fixed ./annotation/plasmodium-0689.xml\n",
+ "Fixed ./annotation/plasmodium-0312.xml\n",
+ "Fixed ./annotation/plasmodium-1137.xml\n",
+ "Fixed ./annotation/plasmodium-0809.xml\n",
+ "Fixed ./annotation/plasmodium-0610.xml\n",
+ "Fixed ./annotation/plasmodium-0135.xml\n",
+ "Fixed ./annotation/plasmodium-1613.xml\n",
+ "Fixed ./annotation/plasmodium-1922.xml\n",
+ "Fixed ./annotation/plasmodium-0127.xml\n",
+ "Fixed ./annotation/plasmodium-2421.xml\n",
+ "Fixed ./annotation/plasmodium-2630.xml\n",
+ "Fixed ./annotation/plasmodium-0841.xml\n",
+ "Fixed ./annotation/plasmodium-0696.xml\n",
+ "Fixed ./annotation/plasmodium-1827.xml\n",
+ "Fixed ./annotation/plasmodium-0194.xml\n",
+ "Fixed ./annotation/plasmodium-0599.xml\n",
+ "Fixed ./annotation/plasmodium-1265.xml\n",
+ "Fixed ./annotation/plasmodium-1316.xml\n",
+ "Fixed ./annotation/plasmodium-0848.xml\n",
+ "Fixed ./annotation/plasmodium-2183.xml\n",
+ "Fixed ./annotation/plasmodium-2552.xml\n",
+ "Fixed ./annotation/plasmodium-0774.xml\n",
+ "Fixed ./annotation/plasmodium-0473.xml\n",
+ "Fixed ./annotation/plasmodium-2020.xml\n",
+ "Fixed ./annotation/plasmodium-2149.xml\n",
+ "Fixed ./annotation/plasmodium-1607.xml\n",
+ "Fixed ./annotation/plasmodium-1257.xml\n",
+ "Fixed ./annotation/plasmodium-0593.xml\n",
+ "Fixed ./annotation/plasmodium-0499.xml\n",
+ "Fixed ./annotation/plasmodium-0114.xml\n",
+ "Fixed ./annotation/plasmodium-1577.xml\n",
+ "Fixed ./annotation/plasmodium-2403.xml\n",
+ "Fixed ./annotation/plasmodium-1339.xml\n",
+ "Fixed ./annotation/plasmodium-1548.xml\n",
+ "Fixed ./annotation/plasmodium-1109.xml\n",
+ "Fixed ./annotation/plasmodium-0124.xml\n",
+ "Fixed ./annotation/plasmodium-1983.xml\n",
+ "Fixed ./annotation/plasmodium-1963.xml\n",
+ "Fixed ./annotation/plasmodium-1988.xml\n",
+ "Fixed ./annotation/plasmodium-1970.xml\n",
+ "Fixed ./annotation/plasmodium-2302.xml\n",
+ "Fixed ./annotation/plasmodium-1954.xml\n",
+ "Fixed ./annotation/plasmodium-1116.xml\n",
+ "Fixed ./annotation/plasmodium-0844.xml\n",
+ "Fixed ./annotation/plasmodium-2236.xml\n",
+ "Fixed ./annotation/plasmodium-1942.xml\n",
+ "Fixed ./annotation/plasmodium-2275.xml\n",
+ "Fixed ./annotation/plasmodium-2031.xml\n",
+ "Fixed ./annotation/plasmodium-1642.xml\n",
+ "Fixed ./annotation/plasmodium-0221.xml\n",
+ "Fixed ./annotation/plasmodium-1478.xml\n",
+ "Fixed ./annotation/plasmodium-0747.xml\n",
+ "Fixed ./annotation/plasmodium-1619.xml\n",
+ "Fixed ./annotation/plasmodium-1928.xml\n",
+ "Fixed ./annotation/plasmodium-2511.xml\n",
+ "Fixed ./annotation/plasmodium-0424.xml\n",
+ "Fixed ./annotation/plasmodium-1467.xml\n",
+ "Fixed ./annotation/plasmodium-1123.xml\n",
+ "Fixed ./annotation/plasmodium-0042.xml\n",
+ "Fixed ./annotation/plasmodium-1524.xml\n",
+ "Fixed ./annotation/plasmodium-1393.xml\n",
+ "Fixed ./annotation/plasmodium-1221.xml\n",
+ "Fixed ./annotation/plasmodium-2429.xml\n",
+ "Fixed ./annotation/plasmodium-0268.xml\n",
+ "Fixed ./annotation/plasmodium-1909.xml\n",
+ "Fixed ./annotation/plasmodium-1093.xml\n",
+ "Fixed ./annotation/plasmodium-1364.xml\n",
+ "Fixed ./annotation/plasmodium-2432.xml\n",
+ "Fixed ./annotation/plasmodium-2091.xml\n",
+ "Fixed ./annotation/plasmodium-1041.xml\n",
+ "Fixed ./annotation/plasmodium-2414.xml\n",
+ "Fixed ./annotation/plasmodium-2415.xml\n",
+ "Fixed ./annotation/plasmodium-1952.xml\n",
+ "Fixed ./annotation/plasmodium-0452.xml\n",
+ "Fixed ./annotation/plasmodium-2680.xml\n",
+ "Fixed ./annotation/plasmodium-0038.xml\n",
+ "Fixed ./annotation/plasmodium-0456.xml\n",
+ "Fixed ./annotation/plasmodium-1480.xml\n",
+ "Fixed ./annotation/plasmodium-1731.xml\n",
+ "Fixed ./annotation/plasmodium-0333.xml\n",
+ "Fixed ./annotation/plasmodium-0687.xml\n",
+ "Fixed ./annotation/plasmodium-1105.xml\n",
+ "Fixed ./annotation/plasmodium-0517.xml\n",
+ "Fixed ./annotation/plasmodium-2161.xml\n",
+ "Fixed ./annotation/plasmodium-1815.xml\n",
+ "Fixed ./annotation/plasmodium-1727.xml\n",
+ "Fixed ./annotation/plasmodium-1666.xml\n",
+ "Fixed ./annotation/plasmodium-2030.xml\n",
+ "Fixed ./annotation/plasmodium-2519.xml\n",
+ "Fixed ./annotation/plasmodium-2108.xml\n",
+ "Fixed ./annotation/plasmodium-0155.xml\n",
+ "Fixed ./annotation/plasmodium-2058.xml\n",
+ "Fixed ./annotation/plasmodium-1448.xml\n",
+ "Fixed ./annotation/plasmodium-0107.xml\n",
+ "Fixed ./annotation/plasmodium-1428.xml\n",
+ "Fixed ./annotation/plasmodium-0241.xml\n",
+ "Fixed ./annotation/plasmodium-1528.xml\n",
+ "Fixed ./annotation/plasmodium-1564.xml\n",
+ "Fixed ./annotation/plasmodium-1631.xml\n",
+ "Fixed ./annotation/plasmodium-2641.xml\n",
+ "Fixed ./annotation/plasmodium-2006.xml\n",
+ "Fixed ./annotation/plasmodium-1739.xml\n",
+ "Fixed ./annotation/plasmodium-2099.xml\n",
+ "Fixed ./annotation/plasmodium-1425.xml\n",
+ "Fixed ./annotation/plasmodium-2484.xml\n",
+ "Fixed ./annotation/plasmodium-2229.xml\n",
+ "Fixed ./annotation/plasmodium-0093.xml\n",
+ "Fixed ./annotation/plasmodium-2272.xml\n",
+ "Fixed ./annotation/plasmodium-1474.xml\n",
+ "Fixed ./annotation/plasmodium-2221.xml\n",
+ "Fixed ./annotation/plasmodium-0441.xml\n",
+ "Fixed ./annotation/plasmodium-1917.xml\n",
+ "Fixed ./annotation/plasmodium-1835.xml\n",
+ "Fixed ./annotation/plasmodium-0576.xml\n",
+ "Fixed ./annotation/plasmodium-0768.xml\n",
+ "Fixed ./annotation/plasmodium-1246.xml\n",
+ "Fixed ./annotation/plasmodium-1341.xml\n",
+ "Fixed ./annotation/plasmodium-1484.xml\n",
+ "Fixed ./annotation/plasmodium-1197.xml\n",
+ "Fixed ./annotation/plasmodium-1995.xml\n",
+ "Fixed ./annotation/plasmodium-0632.xml\n",
+ "Fixed ./annotation/plasmodium-0076.xml\n",
+ "Fixed ./annotation/plasmodium-0577.xml\n",
+ "Fixed ./annotation/plasmodium-0156.xml\n",
+ "Fixed ./annotation/plasmodium-1188.xml\n",
+ "Fixed ./annotation/plasmodium-0489.xml\n",
+ "Fixed ./annotation/plasmodium-1325.xml\n",
+ "Fixed ./annotation/plasmodium-1250.xml\n",
+ "Fixed ./annotation/plasmodium-1239.xml\n",
+ "Fixed ./annotation/plasmodium-0773.xml\n",
+ "Fixed ./annotation/plasmodium-1130.xml\n",
+ "Fixed ./annotation/plasmodium-0327.xml\n",
+ "Fixed ./annotation/plasmodium-1536.xml\n",
+ "Fixed ./annotation/plasmodium-0510.xml\n",
+ "Fixed ./annotation/plasmodium-0501.xml\n",
+ "Fixed ./annotation/plasmodium-0508.xml\n",
+ "Fixed ./annotation/plasmodium-0502.xml\n",
+ "Fixed ./annotation/plasmodium-2428.xml\n",
+ "Fixed ./annotation/plasmodium-0673.xml\n",
+ "Fixed ./annotation/plasmodium-1458.xml\n",
+ "Fixed ./annotation/plasmodium-1865.xml\n",
+ "Fixed ./annotation/plasmodium-2431.xml\n",
+ "Fixed ./annotation/plasmodium-2194.xml\n",
+ "Fixed ./annotation/plasmodium-2426.xml\n",
+ "Fixed ./annotation/plasmodium-1989.xml\n",
+ "Fixed ./annotation/plasmodium-2334.xml\n",
+ "Fixed ./annotation/plasmodium-0338.xml\n",
+ "Fixed ./annotation/plasmodium-1902.xml\n",
+ "Fixed ./annotation/plasmodium-0092.xml\n",
+ "Fixed ./annotation/plasmodium-0326.xml\n",
+ "Fixed ./annotation/plasmodium-0741.xml\n",
+ "Fixed ./annotation/plasmodium-1517.xml\n",
+ "Fixed ./annotation/plasmodium-2009.xml\n",
+ "Fixed ./annotation/plasmodium-2032.xml\n",
+ "Fixed ./annotation/plasmodium-1224.xml\n",
+ "Fixed ./annotation/plasmodium-1357.xml\n",
+ "Fixed ./annotation/plasmodium-2520.xml\n",
+ "Fixed ./annotation/plasmodium-1667.xml\n",
+ "Fixed ./annotation/plasmodium-0740.xml\n",
+ "Fixed ./annotation/plasmodium-0532.xml\n",
+ "Fixed ./annotation/plasmodium-1435.xml\n",
+ "Fixed ./annotation/plasmodium-1031.xml\n",
+ "Fixed ./annotation/plasmodium-2644.xml\n",
+ "Fixed ./annotation/plasmodium-0623.xml\n",
+ "Fixed ./annotation/plasmodium-1115.xml\n",
+ "Fixed ./annotation/plasmodium-2111.xml\n",
+ "Fixed ./annotation/plasmodium-0278.xml\n",
+ "Fixed ./annotation/plasmodium-2691.xml\n",
+ "Fixed ./annotation/plasmodium-1048.xml\n",
+ "Fixed ./annotation/plasmodium-1251.xml\n",
+ "Fixed ./annotation/plasmodium-2000.xml\n",
+ "Fixed ./annotation/plasmodium-0870.xml\n",
+ "Fixed ./annotation/plasmodium-0269.xml\n",
+ "Fixed ./annotation/plasmodium-0507.xml\n",
+ "Fixed ./annotation/plasmodium-0216.xml\n",
+ "Fixed ./annotation/plasmodium-0638.xml\n",
+ "Fixed ./annotation/plasmodium-2701.xml\n",
+ "Fixed ./annotation/plasmodium-0666.xml\n",
+ "Fixed ./annotation/plasmodium-0334.xml\n",
+ "Fixed ./annotation/plasmodium-0311.xml\n",
+ "Fixed ./annotation/plasmodium-1111.xml\n",
+ "Fixed ./annotation/plasmodium-0936.xml\n",
+ "Fixed ./annotation/plasmodium-0955.xml\n",
+ "Fixed ./annotation/plasmodium-1930.xml\n",
+ "Fixed ./annotation/plasmodium-0405.xml\n",
+ "Fixed ./annotation/plasmodium-0674.xml\n",
+ "Fixed ./annotation/plasmodium-1215.xml\n",
+ "Fixed ./annotation/plasmodium-2560.xml\n",
+ "Fixed ./annotation/plasmodium-1069.xml\n",
+ "Fixed ./annotation/plasmodium-0834.xml\n",
+ "Fixed ./annotation/plasmodium-1913.xml\n",
+ "Fixed ./annotation/plasmodium-0835.xml\n",
+ "Fixed ./annotation/plasmodium-0509.xml\n",
+ "Fixed ./annotation/plasmodium-1838.xml\n",
+ "Fixed ./annotation/plasmodium-2235.xml\n",
+ "Fixed ./annotation/plasmodium-0880.xml\n",
+ "Fixed ./annotation/plasmodium-0336.xml\n",
+ "Fixed ./annotation/plasmodium-0121.xml\n",
+ "Fixed ./annotation/plasmodium-1283.xml\n",
+ "Fixed ./annotation/plasmodium-0709.xml\n",
+ "Fixed ./annotation/plasmodium-0246.xml\n",
+ "Fixed ./annotation/plasmodium-0251.xml\n",
+ "Fixed ./annotation/plasmodium-2400.xml\n",
+ "Fixed ./annotation/plasmodium-2364.xml\n",
+ "Fixed ./annotation/plasmodium-2570.xml\n",
+ "Fixed ./annotation/plasmodium-2446.xml\n",
+ "Fixed ./annotation/plasmodium-0527.xml\n",
+ "Fixed ./annotation/plasmodium-0051.xml\n",
+ "Fixed ./annotation/plasmodium-2319.xml\n",
+ "Fixed ./annotation/plasmodium-0252.xml\n",
+ "Fixed ./annotation/plasmodium-2541.xml\n",
+ "Fixed ./annotation/plasmodium-1593.xml\n",
+ "Fixed ./annotation/plasmodium-0927.xml\n",
+ "Fixed ./annotation/plasmodium-1373.xml\n",
+ "Fixed ./annotation/plasmodium-1290.xml\n",
+ "Fixed ./annotation/plasmodium-1981.xml\n",
+ "Fixed ./annotation/plasmodium-1417.xml\n",
+ "Fixed ./annotation/plasmodium-2633.xml\n",
+ "Fixed ./annotation/plasmodium-0178.xml\n",
+ "Fixed ./annotation/plasmodium-1579.xml\n",
+ "Fixed ./annotation/plasmodium-1494.xml\n",
+ "Fixed ./annotation/plasmodium-0071.xml\n",
+ "Fixed ./annotation/plasmodium-2527.xml\n",
+ "Fixed ./annotation/plasmodium-1688.xml\n",
+ "Fixed ./annotation/plasmodium-2419.xml\n",
+ "Fixed ./annotation/plasmodium-2144.xml\n",
+ "Fixed ./annotation/plasmodium-2355.xml\n",
+ "Fixed ./annotation/plasmodium-1418.xml\n",
+ "Fixed ./annotation/plasmodium-0789.xml\n",
+ "Fixed ./annotation/plasmodium-0815.xml\n",
+ "Fixed ./annotation/plasmodium-0728.xml\n",
+ "Fixed ./annotation/plasmodium-1834.xml\n",
+ "Fixed ./annotation/plasmodium-2056.xml\n",
+ "Fixed ./annotation/plasmodium-2595.xml\n",
+ "Fixed ./annotation/plasmodium-0207.xml\n",
+ "Fixed ./annotation/plasmodium-1706.xml\n",
+ "Fixed ./annotation/plasmodium-2195.xml\n",
+ "Fixed ./annotation/plasmodium-2238.xml\n",
+ "Fixed ./annotation/plasmodium-0707.xml\n",
+ "Fixed ./annotation/plasmodium-1047.xml\n",
+ "Fixed ./annotation/plasmodium-1948.xml\n",
+ "Fixed ./annotation/plasmodium-1664.xml\n",
+ "Fixed ./annotation/plasmodium-0453.xml\n",
+ "Fixed ./annotation/plasmodium-0615.xml\n",
+ "Fixed ./annotation/plasmodium-2517.xml\n",
+ "Fixed ./annotation/plasmodium-0399.xml\n",
+ "Fixed ./annotation/plasmodium-0144.xml\n",
+ "Fixed ./annotation/plasmodium-2141.xml\n",
+ "Fixed ./annotation/plasmodium-2159.xml\n",
+ "Fixed ./annotation/plasmodium-1920.xml\n",
+ "Fixed ./annotation/plasmodium-2611.xml\n",
+ "Fixed ./annotation/plasmodium-0475.xml\n",
+ "Fixed ./annotation/plasmodium-0798.xml\n",
+ "Fixed ./annotation/plasmodium-2617.xml\n",
+ "Fixed ./annotation/plasmodium-2669.xml\n",
+ "Fixed ./annotation/plasmodium-2199.xml\n",
+ "Fixed ./annotation/plasmodium-1227.xml\n",
+ "Fixed ./annotation/plasmodium-1186.xml\n",
+ "Fixed ./annotation/plasmodium-1399.xml\n",
+ "Fixed ./annotation/plasmodium-1405.xml\n",
+ "Fixed ./annotation/plasmodium-0903.xml\n",
+ "Fixed ./annotation/plasmodium-2533.xml\n",
+ "Fixed ./annotation/plasmodium-1380.xml\n",
+ "Fixed ./annotation/plasmodium-0205.xml\n",
+ "Fixed ./annotation/plasmodium-1779.xml\n",
+ "Fixed ./annotation/plasmodium-2374.xml\n",
+ "Fixed ./annotation/plasmodium-2373.xml\n",
+ "Fixed ./annotation/plasmodium-2359.xml\n",
+ "Fixed ./annotation/plasmodium-1765.xml\n",
+ "Fixed ./annotation/plasmodium-2298.xml\n",
+ "Fixed ./annotation/plasmodium-0823.xml\n",
+ "Fixed ./annotation/plasmodium-1637.xml\n",
+ "Fixed ./annotation/plasmodium-1975.xml\n",
+ "Fixed ./annotation/plasmodium-1122.xml\n",
+ "Fixed ./annotation/plasmodium-1682.xml\n",
+ "Fixed ./annotation/plasmodium-0061.xml\n",
+ "Fixed ./annotation/plasmodium-1067.xml\n",
+ "Fixed ./annotation/plasmodium-0720.xml\n",
+ "Fixed ./annotation/plasmodium-1843.xml\n",
+ "Fixed ./annotation/plasmodium-0686.xml\n",
+ "Fixed ./annotation/plasmodium-1547.xml\n",
+ "Fixed ./annotation/plasmodium-0598.xml\n",
+ "Fixed ./annotation/plasmodium-0242.xml\n",
+ "Fixed ./annotation/plasmodium-2265.xml\n",
+ "Fixed ./annotation/plasmodium-1120.xml\n",
+ "Fixed ./annotation/plasmodium-0700.xml\n",
+ "Fixed ./annotation/plasmodium-1216.xml\n",
+ "Fixed ./annotation/plasmodium-2137.xml\n",
+ "Fixed ./annotation/plasmodium-0547.xml\n",
+ "Fixed ./annotation/plasmodium-2556.xml\n",
+ "Fixed ./annotation/plasmodium-2555.xml\n",
+ "Fixed ./annotation/plasmodium-0192.xml\n",
+ "Fixed ./annotation/plasmodium-2308.xml\n",
+ "Fixed ./annotation/plasmodium-0922.xml\n",
+ "Fixed ./annotation/plasmodium-1906.xml\n",
+ "Fixed ./annotation/plasmodium-2563.xml\n",
+ "Fixed ./annotation/plasmodium-1008.xml\n",
+ "Fixed ./annotation/plasmodium-0322.xml\n",
+ "Fixed ./annotation/plasmodium-1249.xml\n",
+ "Fixed ./annotation/plasmodium-2609.xml\n",
+ "Fixed ./annotation/plasmodium-2059.xml\n",
+ "Fixed ./annotation/plasmodium-1375.xml\n",
+ "Fixed ./annotation/plasmodium-2158.xml\n",
+ "Fixed ./annotation/plasmodium-0408.xml\n",
+ "Fixed ./annotation/plasmodium-1804.xml\n",
+ "Fixed ./annotation/plasmodium-0702.xml\n",
+ "Fixed ./annotation/plasmodium-1208.xml\n",
+ "Fixed ./annotation/plasmodium-0380.xml\n",
+ "Fixed ./annotation/plasmodium-1144.xml\n",
+ "Fixed ./annotation/plasmodium-0413.xml\n",
+ "Fixed ./annotation/plasmodium-1514.xml\n",
+ "Fixed ./annotation/plasmodium-1447.xml\n",
+ "Fixed ./annotation/plasmodium-2623.xml\n",
+ "Fixed ./annotation/plasmodium-1557.xml\n",
+ "Fixed ./annotation/plasmodium-2687.xml\n",
+ "Fixed ./annotation/plasmodium-2201.xml\n",
+ "Fixed ./annotation/plasmodium-0694.xml\n",
+ "Fixed ./annotation/plasmodium-2510.xml\n",
+ "Fixed ./annotation/plasmodium-1242.xml\n",
+ "Fixed ./annotation/plasmodium-0262.xml\n",
+ "Fixed ./annotation/plasmodium-0920.xml\n",
+ "Fixed ./annotation/plasmodium-2228.xml\n",
+ "Fixed ./annotation/plasmodium-0320.xml\n",
+ "Fixed ./annotation/plasmodium-0607.xml\n",
+ "Fixed ./annotation/plasmodium-0346.xml\n",
+ "Fixed ./annotation/plasmodium-1546.xml\n",
+ "Fixed ./annotation/plasmodium-1877.xml\n",
+ "Fixed ./annotation/plasmodium-2130.xml\n",
+ "Fixed ./annotation/plasmodium-0801.xml\n",
+ "Fixed ./annotation/plasmodium-2313.xml\n",
+ "Fixed ./annotation/plasmodium-1847.xml\n",
+ "Fixed ./annotation/plasmodium-1247.xml\n",
+ "Fixed ./annotation/plasmodium-0597.xml\n",
+ "Fixed ./annotation/plasmodium-0765.xml\n",
+ "Fixed ./annotation/plasmodium-0909.xml\n",
+ "Fixed ./annotation/plasmodium-0956.xml\n",
+ "Fixed ./annotation/plasmodium-2395.xml\n",
+ "Fixed ./annotation/plasmodium-1452.xml\n",
+ "Fixed ./annotation/plasmodium-0680.xml\n",
+ "Fixed ./annotation/plasmodium-2117.xml\n",
+ "Fixed ./annotation/plasmodium-0991.xml\n",
+ "Fixed ./annotation/plasmodium-2292.xml\n",
+ "Fixed ./annotation/plasmodium-0663.xml\n",
+ "Fixed ./annotation/plasmodium-2274.xml\n",
+ "Fixed ./annotation/plasmodium-0954.xml\n",
+ "Fixed ./annotation/plasmodium-0100.xml\n",
+ "Fixed ./annotation/plasmodium-0190.xml\n",
+ "Fixed ./annotation/plasmodium-0012.xml\n",
+ "Fixed ./annotation/plasmodium-2534.xml\n",
+ "Fixed ./annotation/plasmodium-0725.xml\n",
+ "Fixed ./annotation/plasmodium-2571.xml\n",
+ "Fixed ./annotation/plasmodium-1510.xml\n",
+ "Fixed ./annotation/plasmodium-2382.xml\n",
+ "Fixed ./annotation/plasmodium-0937.xml\n",
+ "Fixed ./annotation/plasmodium-1914.xml\n",
+ "Fixed ./annotation/plasmodium-0602.xml\n",
+ "Fixed ./annotation/plasmodium-1261.xml\n",
+ "Fixed ./annotation/plasmodium-1377.xml\n",
+ "Fixed ./annotation/plasmodium-1630.xml\n",
+ "Fixed ./annotation/plasmodium-2196.xml\n",
+ "Fixed ./annotation/plasmodium-1033.xml\n",
+ "Fixed ./annotation/plasmodium-1833.xml\n",
+ "Fixed ./annotation/plasmodium-1445.xml\n",
+ "Fixed ./annotation/plasmodium-2597.xml\n",
+ "Fixed ./annotation/plasmodium-2362.xml\n",
+ "Fixed ./annotation/plasmodium-0972.xml\n",
+ "Fixed ./annotation/plasmodium-0423.xml\n",
+ "Fixed ./annotation/plasmodium-1606.xml\n",
+ "Fixed ./annotation/plasmodium-1700.xml\n",
+ "Fixed ./annotation/plasmodium-2488.xml\n",
+ "Fixed ./annotation/plasmodium-2046.xml\n",
+ "Fixed ./annotation/plasmodium-1090.xml\n",
+ "Fixed ./annotation/plasmodium-2593.xml\n",
+ "Fixed ./annotation/plasmodium-1941.xml\n",
+ "Fixed ./annotation/plasmodium-2375.xml\n",
+ "Fixed ./annotation/plasmodium-1721.xml\n",
+ "Fixed ./annotation/plasmodium-1655.xml\n",
+ "Fixed ./annotation/plasmodium-1214.xml\n",
+ "Fixed ./annotation/plasmodium-2521.xml\n",
+ "Fixed ./annotation/plasmodium-1068.xml\n",
+ "Fixed ./annotation/plasmodium-2345.xml\n",
+ "Fixed ./annotation/plasmodium-0790.xml\n",
+ "Fixed ./annotation/plasmodium-0231.xml\n",
+ "Fixed ./annotation/plasmodium-2070.xml\n",
+ "Fixed ./annotation/plasmodium-1681.xml\n",
+ "Fixed ./annotation/plasmodium-0255.xml\n",
+ "Fixed ./annotation/plasmodium-1342.xml\n",
+ "Fixed ./annotation/plasmodium-2700.xml\n",
+ "Fixed ./annotation/plasmodium-1814.xml\n",
+ "Fixed ./annotation/plasmodium-0752.xml\n",
+ "Fixed ./annotation/plasmodium-1193.xml\n",
+ "Fixed ./annotation/plasmodium-1098.xml\n",
+ "Fixed ./annotation/plasmodium-1718.xml\n",
+ "Fixed ./annotation/plasmodium-1005.xml\n",
+ "Fixed ./annotation/plasmodium-0165.xml\n",
+ "Fixed ./annotation/plasmodium-1684.xml\n",
+ "Fixed ./annotation/plasmodium-1587.xml\n",
+ "Fixed ./annotation/plasmodium-1171.xml\n",
+ "Fixed ./annotation/plasmodium-2506.xml\n",
+ "Fixed ./annotation/plasmodium-0378.xml\n",
+ "Fixed ./annotation/plasmodium-2496.xml\n",
+ "Fixed ./annotation/plasmodium-2668.xml\n",
+ "Fixed ./annotation/plasmodium-0885.xml\n",
+ "Fixed ./annotation/plasmodium-2603.xml\n",
+ "Fixed ./annotation/plasmodium-1133.xml\n",
+ "Fixed ./annotation/plasmodium-1961.xml\n",
+ "Fixed ./annotation/plasmodium-2353.xml\n",
+ "Fixed ./annotation/plasmodium-0516.xml\n",
+ "Fixed ./annotation/plasmodium-0681.xml\n",
+ "Fixed ./annotation/plasmodium-2459.xml\n",
+ "Fixed ./annotation/plasmodium-0608.xml\n",
+ "Fixed ./annotation/plasmodium-1310.xml\n",
+ "Fixed ./annotation/plasmodium-1091.xml\n",
+ "Fixed ./annotation/plasmodium-2264.xml\n",
+ "Fixed ./annotation/plasmodium-2358.xml\n",
+ "Fixed ./annotation/plasmodium-0645.xml\n",
+ "Fixed ./annotation/plasmodium-0330.xml\n",
+ "Fixed ./annotation/plasmodium-0515.xml\n",
+ "Fixed ./annotation/plasmodium-2624.xml\n",
+ "Fixed ./annotation/plasmodium-0142.xml\n",
+ "Fixed ./annotation/plasmodium-0466.xml\n",
+ "Fixed ./annotation/plasmodium-0808.xml\n",
+ "Fixed ./annotation/plasmodium-2305.xml\n",
+ "Fixed ./annotation/plasmodium-1170.xml\n",
+ "Fixed ./annotation/plasmodium-0325.xml\n",
+ "Fixed ./annotation/plasmodium-2487.xml\n",
+ "Fixed ./annotation/plasmodium-2592.xml\n",
+ "Fixed ./annotation/plasmodium-1600.xml\n",
+ "Fixed ./annotation/plasmodium-1482.xml\n",
+ "Fixed ./annotation/plasmodium-0726.xml\n",
+ "Fixed ./annotation/plasmodium-1951.xml\n",
+ "Fixed ./annotation/plasmodium-1253.xml\n",
+ "Fixed ./annotation/plasmodium-1533.xml\n",
+ "Fixed ./annotation/plasmodium-2578.xml\n",
+ "Fixed ./annotation/plasmodium-0871.xml\n",
+ "Fixed ./annotation/plasmodium-0957.xml\n",
+ "Fixed ./annotation/plasmodium-1769.xml\n",
+ "Fixed ./annotation/plasmodium-0471.xml\n",
+ "Fixed ./annotation/plasmodium-0965.xml\n",
+ "Fixed ./annotation/plasmodium-1450.xml\n",
+ "Fixed ./annotation/plasmodium-2327.xml\n",
+ "Fixed ./annotation/plasmodium-2120.xml\n",
+ "Fixed ./annotation/plasmodium-0407.xml\n",
+ "Fixed ./annotation/plasmodium-0097.xml\n",
+ "Fixed ./annotation/plasmodium-1532.xml\n",
+ "Fixed ./annotation/plasmodium-1366.xml\n",
+ "Fixed ./annotation/plasmodium-1327.xml\n",
+ "Fixed ./annotation/plasmodium-2576.xml\n",
+ "Fixed ./annotation/plasmodium-0617.xml\n",
+ "Fixed ./annotation/plasmodium-0206.xml\n",
+ "Fixed ./annotation/plasmodium-0882.xml\n",
+ "Fixed ./annotation/plasmodium-0398.xml\n",
+ "Fixed ./annotation/plasmodium-0120.xml\n",
+ "Fixed ./annotation/plasmodium-0679.xml\n",
+ "Fixed ./annotation/plasmodium-2616.xml\n",
+ "Fixed ./annotation/plasmodium-1601.xml\n",
+ "Fixed ./annotation/plasmodium-1602.xml\n",
+ "Fixed ./annotation/plasmodium-0445.xml\n",
+ "Fixed ./annotation/plasmodium-2193.xml\n",
+ "Fixed ./annotation/plasmodium-0209.xml\n",
+ "Fixed ./annotation/plasmodium-0514.xml\n",
+ "Fixed ./annotation/plasmodium-1148.xml\n",
+ "Fixed ./annotation/plasmodium-2175.xml\n",
+ "Fixed ./annotation/plasmodium-2173.xml\n",
+ "Fixed ./annotation/plasmodium-1608.xml\n",
+ "Fixed ./annotation/plasmodium-0211.xml\n",
+ "Fixed ./annotation/plasmodium-1704.xml\n",
+ "Fixed ./annotation/plasmodium-1903.xml\n",
+ "Fixed ./annotation/plasmodium-1621.xml\n",
+ "Fixed ./annotation/plasmodium-1469.xml\n",
+ "Fixed ./annotation/plasmodium-1228.xml\n",
+ "Fixed ./annotation/plasmodium-1292.xml\n",
+ "Fixed ./annotation/plasmodium-1477.xml\n",
+ "Fixed ./annotation/plasmodium-2542.xml\n",
+ "Fixed ./annotation/plasmodium-2003.xml\n",
+ "Fixed ./annotation/plasmodium-1209.xml\n",
+ "Fixed ./annotation/plasmodium-2466.xml\n",
+ "Fixed ./annotation/plasmodium-1361.xml\n",
+ "Fixed ./annotation/plasmodium-1896.xml\n",
+ "Fixed ./annotation/plasmodium-1182.xml\n",
+ "Fixed ./annotation/plasmodium-1663.xml\n",
+ "Fixed ./annotation/plasmodium-2383.xml\n",
+ "Fixed ./annotation/plasmodium-2628.xml\n",
+ "Fixed ./annotation/plasmodium-2658.xml\n",
+ "Fixed ./annotation/plasmodium-2640.xml\n",
+ "Fixed ./annotation/plasmodium-1841.xml\n",
+ "Fixed ./annotation/plasmodium-2312.xml\n",
+ "Fixed ./annotation/plasmodium-2629.xml\n",
+ "Fixed ./annotation/plasmodium-0856.xml\n",
+ "Fixed ./annotation/plasmodium-2405.xml\n",
+ "Fixed ./annotation/plasmodium-0759.xml\n",
+ "Fixed ./annotation/plasmodium-1371.xml\n",
+ "Fixed ./annotation/plasmodium-0193.xml\n",
+ "Fixed ./annotation/plasmodium-2702.xml\n",
+ "Fixed ./annotation/plasmodium-2051.xml\n",
+ "Fixed ./annotation/plasmodium-0295.xml\n",
+ "Fixed ./annotation/plasmodium-2480.xml\n",
+ "Fixed ./annotation/plasmodium-2222.xml\n",
+ "Fixed ./annotation/plasmodium-1322.xml\n",
+ "Fixed ./annotation/plasmodium-2411.xml\n",
+ "Fixed ./annotation/plasmodium-0949.xml\n",
+ "Fixed ./annotation/plasmodium-0184.xml\n",
+ "Fixed ./annotation/plasmodium-1421.xml\n",
+ "Fixed ./annotation/plasmodium-1423.xml\n",
+ "Fixed ./annotation/plasmodium-0497.xml\n",
+ "Fixed ./annotation/plasmodium-1716.xml\n",
+ "Fixed ./annotation/plasmodium-0198.xml\n",
+ "Fixed ./annotation/plasmodium-1401.xml\n",
+ "Fixed ./annotation/plasmodium-0463.xml\n",
+ "Fixed ./annotation/plasmodium-0999.xml\n",
+ "Fixed ./annotation/plasmodium-0970.xml\n",
+ "Fixed ./annotation/plasmodium-2018.xml\n",
+ "Fixed ./annotation/plasmodium-1982.xml\n",
+ "Fixed ./annotation/plasmodium-0437.xml\n",
+ "Fixed ./annotation/plasmodium-0986.xml\n",
+ "Fixed ./annotation/plasmodium-1921.xml\n",
+ "Fixed ./annotation/plasmodium-0449.xml\n",
+ "Fixed ./annotation/plasmodium-2176.xml\n",
+ "Fixed ./annotation/plasmodium-1396.xml\n",
+ "Fixed ./annotation/plasmodium-0584.xml\n",
+ "Fixed ./annotation/plasmodium-0531.xml\n",
+ "Fixed ./annotation/plasmodium-1695.xml\n",
+ "Fixed ./annotation/plasmodium-2370.xml\n",
+ "Fixed ./annotation/plasmodium-2424.xml\n",
+ "Fixed ./annotation/plasmodium-1426.xml\n",
+ "Fixed ./annotation/plasmodium-0203.xml\n",
+ "Fixed ./annotation/plasmodium-1960.xml\n",
+ "Fixed ./annotation/plasmodium-2508.xml\n",
+ "Fixed ./annotation/plasmodium-0415.xml\n",
+ "Fixed ./annotation/plasmodium-0775.xml\n",
+ "Fixed ./annotation/plasmodium-1807.xml\n",
+ "Fixed ./annotation/plasmodium-2503.xml\n",
+ "Fixed ./annotation/plasmodium-2659.xml\n",
+ "Fixed ./annotation/plasmodium-2634.xml\n",
+ "Fixed ./annotation/plasmodium-2024.xml\n",
+ "Fixed ./annotation/plasmodium-1690.xml\n",
+ "Fixed ./annotation/plasmodium-2348.xml\n",
+ "Fixed ./annotation/plasmodium-2262.xml\n",
+ "Fixed ./annotation/plasmodium-0934.xml\n",
+ "Fixed ./annotation/plasmodium-1056.xml\n",
+ "Fixed ./annotation/plasmodium-0778.xml\n",
+ "Fixed ./annotation/plasmodium-1852.xml\n",
+ "Fixed ./annotation/plasmodium-0583.xml\n",
+ "Fixed ./annotation/plasmodium-2249.xml\n",
+ "Fixed ./annotation/plasmodium-0496.xml\n",
+ "Fixed ./annotation/plasmodium-0670.xml\n",
+ "Fixed ./annotation/plasmodium-0368.xml\n",
+ "Fixed ./annotation/plasmodium-2076.xml\n",
+ "Fixed ./annotation/plasmodium-0187.xml\n",
+ "Fixed ./annotation/plasmodium-0784.xml\n",
+ "Fixed ./annotation/plasmodium-0314.xml\n",
+ "Fixed ./annotation/plasmodium-0074.xml\n",
+ "Fixed ./annotation/plasmodium-1912.xml\n",
+ "Fixed ./annotation/plasmodium-1354.xml\n",
+ "Fixed ./annotation/plasmodium-1603.xml\n",
+ "Fixed ./annotation/plasmodium-0313.xml\n",
+ "Fixed ./annotation/plasmodium-1683.xml\n",
+ "Fixed ./annotation/plasmodium-2256.xml\n",
+ "Fixed ./annotation/plasmodium-1812.xml\n",
+ "Fixed ./annotation/plasmodium-0589.xml\n",
+ "Fixed ./annotation/plasmodium-0347.xml\n",
+ "Fixed ./annotation/plasmodium-0866.xml\n",
+ "Fixed ./annotation/plasmodium-2591.xml\n",
+ "Fixed ./annotation/plasmodium-0569.xml\n",
+ "Fixed ./annotation/plasmodium-2347.xml\n",
+ "Fixed ./annotation/plasmodium-0788.xml\n",
+ "Fixed ./annotation/plasmodium-1365.xml\n",
+ "Fixed ./annotation/plasmodium-2270.xml\n",
+ "Fixed ./annotation/plasmodium-2357.xml\n",
+ "Fixed ./annotation/plasmodium-0600.xml\n",
+ "Fixed ./annotation/plasmodium-0050.xml\n",
+ "Fixed ./annotation/plasmodium-0746.xml\n",
+ "Fixed ./annotation/plasmodium-2607.xml\n",
+ "Fixed ./annotation/plasmodium-2231.xml\n",
+ "Fixed ./annotation/plasmodium-0779.xml\n",
+ "Fixed ./annotation/plasmodium-0285.xml\n",
+ "Fixed ./annotation/plasmodium-0595.xml\n",
+ "Fixed ./annotation/plasmodium-0181.xml\n",
+ "Fixed ./annotation/plasmodium-2697.xml\n",
+ "Fixed ./annotation/plasmodium-0017.xml\n",
+ "Fixed ./annotation/plasmodium-2471.xml\n",
+ "Fixed ./annotation/plasmodium-0820.xml\n",
+ "Fixed ./annotation/plasmodium-0429.xml\n",
+ "Fixed ./annotation/plasmodium-0541.xml\n",
+ "Fixed ./annotation/plasmodium-1962.xml\n",
+ "Fixed ./annotation/plasmodium-1522.xml\n",
+ "Fixed ./annotation/plasmodium-0088.xml\n",
+ "Fixed ./annotation/plasmodium-2646.xml\n",
+ "Fixed ./annotation/plasmodium-2053.xml\n",
+ "Fixed ./annotation/plasmodium-1539.xml\n",
+ "Fixed ./annotation/plasmodium-1013.xml\n",
+ "Fixed ./annotation/plasmodium-0060.xml\n",
+ "Fixed ./annotation/plasmodium-0075.xml\n",
+ "Fixed ./annotation/plasmodium-0138.xml\n",
+ "Fixed ./annotation/plasmodium-2156.xml\n",
+ "Fixed ./annotation/plasmodium-0925.xml\n",
+ "Fixed ./annotation/plasmodium-2472.xml\n",
+ "Fixed ./annotation/plasmodium-0137.xml\n",
+ "Fixed ./annotation/plasmodium-0323.xml\n",
+ "Fixed ./annotation/plasmodium-2418.xml\n",
+ "Fixed ./annotation/plasmodium-1382.xml\n",
+ "Fixed ./annotation/plasmodium-1345.xml\n",
+ "Fixed ./annotation/plasmodium-0304.xml\n",
+ "Fixed ./annotation/plasmodium-2044.xml\n",
+ "Fixed ./annotation/plasmodium-0840.xml\n",
+ "Fixed ./annotation/plasmodium-1440.xml\n",
+ "Fixed ./annotation/plasmodium-0928.xml\n",
+ "Fixed ./annotation/plasmodium-1929.xml\n",
+ "Fixed ./annotation/plasmodium-2518.xml\n",
+ "Fixed ./annotation/plasmodium-2654.xml\n",
+ "Fixed ./annotation/plasmodium-2062.xml\n",
+ "Fixed ./annotation/plasmodium-1521.xml\n",
+ "Fixed ./annotation/plasmodium-1433.xml\n",
+ "Fixed ./annotation/plasmodium-1489.xml\n",
+ "Fixed ./annotation/plasmodium-1363.xml\n",
+ "Fixed ./annotation/plasmodium-0967.xml\n",
+ "Fixed ./annotation/plasmodium-0613.xml\n",
+ "Fixed ./annotation/plasmodium-1567.xml\n",
+ "Fixed ./annotation/plasmodium-0983.xml\n",
+ "Fixed ./annotation/plasmodium-2142.xml\n",
+ "Fixed ./annotation/plasmodium-1789.xml\n",
+ "Fixed ./annotation/plasmodium-1155.xml\n",
+ "Fixed ./annotation/plasmodium-1254.xml\n",
+ "Fixed ./annotation/plasmodium-2435.xml\n",
+ "Fixed ./annotation/plasmodium-1468.xml\n",
+ "Fixed ./annotation/plasmodium-2476.xml\n",
+ "Fixed ./annotation/plasmodium-1508.xml\n",
+ "Fixed ./annotation/plasmodium-2240.xml\n",
+ "Fixed ./annotation/plasmodium-0821.xml\n",
+ "Fixed ./annotation/plasmodium-1225.xml\n",
+ "Fixed ./annotation/plasmodium-1066.xml\n",
+ "Fixed ./annotation/plasmodium-0150.xml\n",
+ "Fixed ./annotation/plasmodium-2026.xml\n",
+ "Fixed ./annotation/plasmodium-2268.xml\n",
+ "Fixed ./annotation/plasmodium-0036.xml\n",
+ "Fixed ./annotation/plasmodium-0611.xml\n",
+ "Fixed ./annotation/plasmodium-1711.xml\n",
+ "Fixed ./annotation/plasmodium-2613.xml\n",
+ "Fixed ./annotation/plasmodium-0977.xml\n",
+ "Fixed ./annotation/plasmodium-1391.xml\n",
+ "Fixed ./annotation/plasmodium-1286.xml\n",
+ "Fixed ./annotation/plasmodium-1499.xml\n",
+ "Fixed ./annotation/plasmodium-1181.xml\n",
+ "Fixed ./annotation/plasmodium-1237.xml\n",
+ "Fixed ./annotation/plasmodium-1797.xml\n",
+ "Fixed ./annotation/plasmodium-0994.xml\n",
+ "Fixed ./annotation/plasmodium-1329.xml\n",
+ "Fixed ./annotation/plasmodium-1702.xml\n",
+ "Fixed ./annotation/plasmodium-1652.xml\n",
+ "Fixed ./annotation/plasmodium-0000.xml\n",
+ "Fixed ./annotation/plasmodium-2545.xml\n",
+ "Fixed ./annotation/plasmodium-0874.xml\n",
+ "Fixed ./annotation/plasmodium-0164.xml\n",
+ "Fixed ./annotation/plasmodium-1201.xml\n",
+ "Fixed ./annotation/plasmodium-2652.xml\n",
+ "Fixed ./annotation/plasmodium-1185.xml\n",
+ "Fixed ./annotation/plasmodium-0678.xml\n",
+ "Fixed ./annotation/plasmodium-1145.xml\n",
+ "Fixed ./annotation/plasmodium-2212.xml\n",
+ "Fixed ./annotation/plasmodium-0188.xml\n",
+ "Fixed ./annotation/plasmodium-0245.xml\n",
+ "Fixed ./annotation/plasmodium-1388.xml\n",
+ "Fixed ./annotation/plasmodium-2181.xml\n",
+ "Fixed ./annotation/plasmodium-2338.xml\n",
+ "Fixed ./annotation/plasmodium-1114.xml\n",
+ "Fixed ./annotation/plasmodium-2138.xml\n",
+ "Fixed ./annotation/plasmodium-0273.xml\n",
+ "Fixed ./annotation/plasmodium-1308.xml\n",
+ "Fixed ./annotation/plasmodium-1959.xml\n",
+ "Fixed ./annotation/plasmodium-2136.xml\n",
+ "Fixed ./annotation/plasmodium-0018.xml\n",
+ "Fixed ./annotation/plasmodium-0555.xml\n",
+ "Fixed ./annotation/plasmodium-0337.xml\n",
+ "Fixed ./annotation/plasmodium-2224.xml\n",
+ "Fixed ./annotation/plasmodium-2393.xml\n",
+ "Fixed ./annotation/plasmodium-0596.xml\n",
+ "Fixed ./annotation/plasmodium-1359.xml\n",
+ "Fixed ./annotation/plasmodium-0367.xml\n",
+ "Fixed ./annotation/plasmodium-2166.xml\n",
+ "Fixed ./annotation/plasmodium-1936.xml\n",
+ "Fixed ./annotation/plasmodium-0118.xml\n",
+ "Fixed ./annotation/plasmodium-1745.xml\n",
+ "Fixed ./annotation/plasmodium-1199.xml\n",
+ "Fixed ./annotation/plasmodium-1511.xml\n",
+ "Fixed ./annotation/plasmodium-2494.xml\n",
+ "Fixed ./annotation/plasmodium-2678.xml\n",
+ "Fixed ./annotation/plasmodium-1671.xml\n",
+ "Fixed ./annotation/plasmodium-2606.xml\n",
+ "Fixed ./annotation/plasmodium-1830.xml\n",
+ "Fixed ./annotation/plasmodium-1871.xml\n",
+ "Fixed ./annotation/plasmodium-2178.xml\n",
+ "Fixed ./annotation/plasmodium-0455.xml\n",
+ "Fixed ./annotation/plasmodium-0163.xml\n",
+ "Fixed ./annotation/plasmodium-1784.xml\n",
+ "Fixed ./annotation/plasmodium-2202.xml\n",
+ "Fixed ./annotation/plasmodium-2079.xml\n",
+ "Fixed ./annotation/plasmodium-0581.xml\n",
+ "Fixed ./annotation/plasmodium-2693.xml\n",
+ "Fixed ./annotation/plasmodium-0842.xml\n",
+ "Fixed ./annotation/plasmodium-2679.xml\n",
+ "Fixed ./annotation/plasmodium-0523.xml\n",
+ "Fixed ./annotation/plasmodium-2388.xml\n",
+ "Fixed ./annotation/plasmodium-1314.xml\n",
+ "Fixed ./annotation/plasmodium-0013.xml\n",
+ "Fixed ./annotation/plasmodium-1178.xml\n",
+ "Fixed ./annotation/plasmodium-1999.xml\n",
+ "Fixed ./annotation/plasmodium-0804.xml\n",
+ "Fixed ./annotation/plasmodium-2489.xml\n",
+ "Fixed ./annotation/plasmodium-1568.xml\n",
+ "Fixed ./annotation/plasmodium-1894.xml\n",
+ "Fixed ./annotation/plasmodium-0519.xml\n",
+ "Fixed ./annotation/plasmodium-1715.xml\n",
+ "Fixed ./annotation/plasmodium-0763.xml\n",
+ "Fixed ./annotation/plasmodium-1821.xml\n",
+ "Fixed ./annotation/plasmodium-0023.xml\n",
+ "Fixed ./annotation/plasmodium-2504.xml\n",
+ "Fixed ./annotation/plasmodium-0737.xml\n",
+ "Fixed ./annotation/plasmodium-1506.xml\n",
+ "Fixed ./annotation/plasmodium-1768.xml\n",
+ "Fixed ./annotation/plasmodium-2114.xml\n",
+ "Fixed ./annotation/plasmodium-0373.xml\n",
+ "Fixed ./annotation/plasmodium-0440.xml\n",
+ "Fixed ./annotation/plasmodium-2526.xml\n",
+ "Fixed ./annotation/plasmodium-0444.xml\n",
+ "Fixed ./annotation/plasmodium-0287.xml\n",
+ "Fixed ./annotation/plasmodium-2468.xml\n",
+ "Fixed ./annotation/plasmodium-1414.xml\n",
+ "Fixed ./annotation/plasmodium-1139.xml\n",
+ "Fixed ./annotation/plasmodium-1955.xml\n",
+ "Fixed ./annotation/plasmodium-2211.xml\n",
+ "Fixed ./annotation/plasmodium-1296.xml\n",
+ "Fixed ./annotation/plasmodium-2163.xml\n",
+ "Fixed ./annotation/plasmodium-1822.xml\n",
+ "Fixed ./annotation/plasmodium-2315.xml\n",
+ "Fixed ./annotation/plasmodium-2371.xml\n",
+ "Fixed ./annotation/plasmodium-0533.xml\n",
+ "Fixed ./annotation/plasmodium-0975.xml\n",
+ "Fixed ./annotation/plasmodium-1022.xml\n",
+ "Fixed ./annotation/plasmodium-1119.xml\n",
+ "Fixed ./annotation/plasmodium-2167.xml\n",
+ "Fixed ./annotation/plasmodium-2343.xml\n",
+ "Fixed ./annotation/plasmodium-1493.xml\n",
+ "Fixed ./annotation/plasmodium-0651.xml\n",
+ "Fixed ./annotation/plasmodium-0537.xml\n",
+ "Fixed ./annotation/plasmodium-1910.xml\n",
+ "Fixed ./annotation/plasmodium-1616.xml\n",
+ "Fixed ./annotation/plasmodium-0865.xml\n",
+ "Fixed ./annotation/plasmodium-2237.xml\n",
+ "Fixed ./annotation/plasmodium-0992.xml\n",
+ "Fixed ./annotation/plasmodium-1723.xml\n",
+ "Fixed ./annotation/plasmodium-0151.xml\n",
+ "Fixed ./annotation/plasmodium-2349.xml\n",
+ "Fixed ./annotation/plasmodium-1527.xml\n",
+ "Fixed ./annotation/plasmodium-0807.xml\n",
+ "Fixed ./annotation/plasmodium-1095.xml\n",
+ "Fixed ./annotation/plasmodium-1412.xml\n",
+ "Fixed ./annotation/plasmodium-0978.xml\n",
+ "Fixed ./annotation/plasmodium-0350.xml\n",
+ "Fixed ./annotation/plasmodium-2184.xml\n",
+ "Fixed ./annotation/plasmodium-1856.xml\n",
+ "Fixed ./annotation/plasmodium-1848.xml\n",
+ "Fixed ./annotation/plasmodium-1295.xml\n",
+ "Fixed ./annotation/plasmodium-1021.xml\n",
+ "Fixed ./annotation/plasmodium-2133.xml\n",
+ "Fixed ./annotation/plasmodium-0238.xml\n",
+ "Fixed ./annotation/plasmodium-0143.xml\n",
+ "Fixed ./annotation/plasmodium-0760.xml\n",
+ "Fixed ./annotation/plasmodium-2566.xml\n",
+ "Fixed ./annotation/plasmodium-0873.xml\n",
+ "Fixed ./annotation/plasmodium-0869.xml\n",
+ "Fixed ./annotation/plasmodium-1355.xml\n",
+ "Fixed ./annotation/plasmodium-2104.xml\n",
+ "Fixed ./annotation/plasmodium-1552.xml\n",
+ "Fixed ./annotation/plasmodium-1187.xml\n",
+ "Fixed ./annotation/plasmodium-1010.xml\n",
+ "Fixed ./annotation/plasmodium-1786.xml\n",
+ "Fixed ./annotation/plasmodium-1689.xml\n",
+ "Fixed ./annotation/plasmodium-0719.xml\n",
+ "Fixed ./annotation/plasmodium-0535.xml\n",
+ "Fixed ./annotation/plasmodium-0976.xml\n",
+ "Fixed ./annotation/plasmodium-2263.xml\n",
+ "Fixed ./annotation/plasmodium-2008.xml\n",
+ "Fixed ./annotation/plasmodium-1395.xml\n",
+ "Fixed ./annotation/plasmodium-0490.xml\n",
+ "Fixed ./annotation/plasmodium-0876.xml\n",
+ "Fixed ./annotation/plasmodium-0122.xml\n",
+ "Fixed ./annotation/plasmodium-0391.xml\n",
+ "Fixed ./annotation/plasmodium-1272.xml\n",
+ "Fixed ./annotation/plasmodium-1676.xml\n",
+ "Fixed ./annotation/plasmodium-0839.xml\n",
+ "Fixed ./annotation/plasmodium-1297.xml\n",
+ "Fixed ./annotation/plasmodium-1103.xml\n",
+ "Fixed ./annotation/plasmodium-0383.xml\n",
+ "Fixed ./annotation/plasmodium-2461.xml\n",
+ "Fixed ./annotation/plasmodium-1966.xml\n",
+ "Fixed ./annotation/plasmodium-2493.xml\n",
+ "Fixed ./annotation/plasmodium-0652.xml\n",
+ "Fixed ./annotation/plasmodium-0744.xml\n",
+ "Fixed ./annotation/plasmodium-0028.xml\n",
+ "Fixed ./annotation/plasmodium-2379.xml\n",
+ "Fixed ./annotation/plasmodium-0111.xml\n",
+ "Fixed ./annotation/plasmodium-0667.xml\n",
+ "Fixed ./annotation/plasmodium-1622.xml\n",
+ "Fixed ./annotation/plasmodium-1724.xml\n",
+ "Fixed ./annotation/plasmodium-0622.xml\n",
+ "Fixed ./annotation/plasmodium-2215.xml\n",
+ "Fixed ./annotation/plasmodium-0926.xml\n",
+ "Fixed ./annotation/plasmodium-0039.xml\n",
+ "Fixed ./annotation/plasmodium-0008.xml\n",
+ "Fixed ./annotation/plasmodium-1958.xml\n",
+ "Fixed ./annotation/plasmodium-0132.xml\n",
+ "Fixed ./annotation/plasmodium-1541.xml\n",
+ "Fixed ./annotation/plasmodium-1264.xml\n",
+ "Fixed ./annotation/plasmodium-0521.xml\n",
+ "Fixed ./annotation/plasmodium-2336.xml\n",
+ "Fixed ./annotation/plasmodium-0204.xml\n",
+ "Fixed ./annotation/plasmodium-0283.xml\n",
+ "Fixed ./annotation/plasmodium-2299.xml\n",
+ "Fixed ./annotation/plasmodium-1019.xml\n",
+ "Fixed ./annotation/plasmodium-2329.xml\n",
+ "Fixed ./annotation/plasmodium-0525.xml\n",
+ "Fixed ./annotation/plasmodium-2677.xml\n",
+ "Fixed ./annotation/plasmodium-1167.xml\n",
+ "Fixed ./annotation/plasmodium-1993.xml\n",
+ "Fixed ./annotation/plasmodium-1117.xml\n",
+ "Fixed ./annotation/plasmodium-0518.xml\n",
+ "Fixed ./annotation/plasmodium-0772.xml\n",
+ "Fixed ./annotation/plasmodium-1658.xml\n",
+ "Fixed ./annotation/plasmodium-2667.xml\n",
+ "Fixed ./annotation/plasmodium-0371.xml\n",
+ "Fixed ./annotation/plasmodium-1336.xml\n",
+ "Fixed ./annotation/plasmodium-0374.xml\n",
+ "Fixed ./annotation/plasmodium-1591.xml\n",
+ "Fixed ./annotation/plasmodium-2398.xml\n",
+ "Fixed ./annotation/plasmodium-1356.xml\n",
+ "Fixed ./annotation/plasmodium-1406.xml\n",
+ "Fixed ./annotation/plasmodium-1470.xml\n",
+ "Fixed ./annotation/plasmodium-2378.xml\n",
+ "Fixed ./annotation/plasmodium-1623.xml\n",
+ "Fixed ./annotation/plasmodium-2266.xml\n",
+ "Fixed ./annotation/plasmodium-1202.xml\n",
+ "Fixed ./annotation/plasmodium-0002.xml\n",
+ "Fixed ./annotation/plasmodium-0280.xml\n",
+ "Fixed ./annotation/plasmodium-0522.xml\n",
+ "Fixed ./annotation/plasmodium-1582.xml\n",
+ "Fixed ./annotation/plasmodium-0264.xml\n",
+ "Fixed ./annotation/plasmodium-1483.xml\n",
+ "Fixed ./annotation/plasmodium-1558.xml\n",
+ "Fixed ./annotation/plasmodium-0864.xml\n",
+ "Fixed ./annotation/plasmodium-0722.xml\n",
+ "Fixed ./annotation/plasmodium-0026.xml\n",
+ "Fixed ./annotation/plasmodium-2326.xml\n",
+ "Fixed ./annotation/plasmodium-0392.xml\n",
+ "Fixed ./annotation/plasmodium-2337.xml\n",
+ "Fixed ./annotation/plasmodium-2233.xml\n",
+ "Fixed ./annotation/plasmodium-1672.xml\n",
+ "Fixed ./annotation/plasmodium-1311.xml\n",
+ "Fixed ./annotation/plasmodium-0914.xml\n",
+ "Fixed ./annotation/plasmodium-0843.xml\n",
+ "Fixed ./annotation/plasmodium-1080.xml\n",
+ "Fixed ./annotation/plasmodium-0573.xml\n",
+ "Fixed ./annotation/plasmodium-1223.xml\n",
+ "Fixed ./annotation/plasmodium-2463.xml\n",
+ "Fixed ./annotation/plasmodium-1413.xml\n",
+ "Fixed ./annotation/plasmodium-1845.xml\n",
+ "Fixed ./annotation/plasmodium-0883.xml\n",
+ "Fixed ./annotation/plasmodium-2109.xml\n",
+ "Fixed ./annotation/plasmodium-0968.xml\n",
+ "Fixed ./annotation/plasmodium-1473.xml\n",
+ "Fixed ./annotation/plasmodium-1661.xml\n",
+ "Fixed ./annotation/plasmodium-1788.xml\n",
+ "Fixed ./annotation/plasmodium-1437.xml\n",
+ "Fixed ./annotation/plasmodium-1530.xml\n",
+ "Fixed ./annotation/plasmodium-0483.xml\n",
+ "Fixed ./annotation/plasmodium-1101.xml\n",
+ "Fixed ./annotation/plasmodium-0335.xml\n",
+ "Fixed ./annotation/plasmodium-0110.xml\n",
+ "Fixed ./annotation/plasmodium-0055.xml\n",
+ "Fixed ./annotation/plasmodium-1824.xml\n",
+ "Fixed ./annotation/plasmodium-1032.xml\n",
+ "Fixed ./annotation/plasmodium-1049.xml\n",
+ "Fixed ./annotation/plasmodium-2365.xml\n",
+ "Fixed ./annotation/plasmodium-2507.xml\n",
+ "Fixed ./annotation/plasmodium-1610.xml\n",
+ "Fixed ./annotation/plasmodium-0831.xml\n",
+ "Fixed ./annotation/plasmodium-1757.xml\n",
+ "Fixed ./annotation/plasmodium-1306.xml\n",
+ "Fixed ./annotation/plasmodium-1881.xml\n",
+ "Fixed ./annotation/plasmodium-2004.xml\n",
+ "Fixed ./annotation/plasmodium-1344.xml\n",
+ "Fixed ./annotation/plasmodium-2205.xml\n",
+ "Fixed ./annotation/plasmodium-1831.xml\n",
+ "Fixed ./annotation/plasmodium-0969.xml\n",
+ "Fixed ./annotation/plasmodium-2115.xml\n",
+ "Fixed ./annotation/plasmodium-1086.xml\n",
+ "Fixed ./annotation/plasmodium-2582.xml\n",
+ "Fixed ./annotation/plasmodium-2598.xml\n",
+ "Fixed ./annotation/plasmodium-2307.xml\n",
+ "Fixed ./annotation/plasmodium-1362.xml\n",
+ "Fixed ./annotation/plasmodium-0716.xml\n",
+ "Fixed ./annotation/plasmodium-1938.xml\n",
+ "Fixed ./annotation/plasmodium-0435.xml\n",
+ "Fixed ./annotation/plasmodium-0932.xml\n",
+ "Fixed ./annotation/plasmodium-1990.xml\n",
+ "Fixed ./annotation/plasmodium-1935.xml\n",
+ "Fixed ./annotation/plasmodium-1844.xml\n",
+ "Fixed ./annotation/plasmodium-0923.xml\n",
+ "Fixed ./annotation/plasmodium-1891.xml\n",
+ "Fixed ./annotation/plasmodium-2290.xml\n",
+ "Fixed ./annotation/plasmodium-0177.xml\n",
+ "Fixed ./annotation/plasmodium-0256.xml\n",
+ "Fixed ./annotation/plasmodium-0176.xml\n",
+ "Fixed ./annotation/plasmodium-0872.xml\n",
+ "Fixed ./annotation/plasmodium-0563.xml\n",
+ "Fixed ./annotation/plasmodium-2376.xml\n",
+ "Fixed ./annotation/plasmodium-0281.xml\n",
+ "Fixed ./annotation/plasmodium-1324.xml\n",
+ "Fixed ./annotation/plasmodium-2433.xml\n",
+ "Fixed ./annotation/plasmodium-1771.xml\n",
+ "Fixed ./annotation/plasmodium-1675.xml\n",
+ "Fixed ./annotation/plasmodium-1184.xml\n",
+ "Fixed ./annotation/plasmodium-0197.xml\n",
+ "Fixed ./annotation/plasmodium-0915.xml\n",
+ "Fixed ./annotation/plasmodium-0512.xml\n",
+ "Fixed ./annotation/plasmodium-0196.xml\n",
+ "Fixed ./annotation/plasmodium-1099.xml\n",
+ "Fixed ./annotation/plasmodium-1038.xml\n",
+ "Fixed ./annotation/plasmodium-1461.xml\n",
+ "Fixed ./annotation/plasmodium-1472.xml\n",
+ "Fixed ./annotation/plasmodium-0300.xml\n",
+ "Fixed ./annotation/plasmodium-0641.xml\n",
+ "Fixed ./annotation/plasmodium-0612.xml\n",
+ "Fixed ./annotation/plasmodium-0218.xml\n",
+ "Fixed ./annotation/plasmodium-0214.xml\n",
+ "Fixed ./annotation/plasmodium-2602.xml\n",
+ "Fixed ./annotation/plasmodium-2150.xml\n",
+ "Fixed ./annotation/plasmodium-0222.xml\n",
+ "Fixed ./annotation/plasmodium-1226.xml\n",
+ "Fixed ./annotation/plasmodium-1157.xml\n",
+ "Fixed ./annotation/plasmodium-2306.xml\n",
+ "Fixed ./annotation/plasmodium-0064.xml\n",
+ "Fixed ./annotation/plasmodium-0457.xml\n",
+ "Fixed ./annotation/plasmodium-2316.xml\n",
+ "Fixed ./annotation/plasmodium-0985.xml\n",
+ "Fixed ./annotation/plasmodium-1190.xml\n",
+ "Fixed ./annotation/plasmodium-0249.xml\n",
+ "Fixed ./annotation/plasmodium-1471.xml\n",
+ "Fixed ./annotation/plasmodium-2356.xml\n",
+ "Fixed ./annotation/plasmodium-0580.xml\n",
+ "Fixed ./annotation/plasmodium-2500.xml\n",
+ "Fixed ./annotation/plasmodium-0048.xml\n",
+ "Fixed ./annotation/plasmodium-2280.xml\n",
+ "Fixed ./annotation/plasmodium-0493.xml\n",
+ "Fixed ./annotation/plasmodium-0160.xml\n",
+ "Fixed ./annotation/plasmodium-1911.xml\n",
+ "Fixed ./annotation/plasmodium-2596.xml\n",
+ "Fixed ./annotation/plasmodium-2128.xml\n",
+ "Fixed ./annotation/plasmodium-0662.xml\n",
+ "Fixed ./annotation/plasmodium-0377.xml\n",
+ "Fixed ./annotation/plasmodium-1673.xml\n",
+ "Fixed ./annotation/plasmodium-0083.xml\n",
+ "Fixed ./annotation/plasmodium-0116.xml\n",
+ "Fixed ./annotation/plasmodium-0277.xml\n",
+ "Fixed ./annotation/plasmodium-1640.xml\n",
+ "Fixed ./annotation/plasmodium-2351.xml\n",
+ "Fixed ./annotation/plasmodium-0460.xml\n",
+ "Fixed ./annotation/plasmodium-2281.xml\n",
+ "Fixed ./annotation/plasmodium-1360.xml\n",
+ "Fixed ./annotation/plasmodium-0387.xml\n",
+ "Fixed ./annotation/plasmodium-0095.xml\n",
+ "Fixed ./annotation/plasmodium-1475.xml\n",
+ "Fixed ./annotation/plasmodium-2664.xml\n",
+ "Fixed ./annotation/plasmodium-2320.xml\n",
+ "Fixed ./annotation/plasmodium-0824.xml\n",
+ "Fixed ./annotation/plasmodium-0146.xml\n",
+ "Fixed ./annotation/plasmodium-0621.xml\n",
+ "Fixed ./annotation/plasmodium-0202.xml\n",
+ "Fixed ./annotation/plasmodium-2656.xml\n",
+ "Fixed ./annotation/plasmodium-1058.xml\n",
+ "Fixed ./annotation/plasmodium-2186.xml\n",
+ "Fixed ./annotation/plasmodium-1085.xml\n",
+ "Fixed ./annotation/plasmodium-1605.xml\n",
+ "Fixed ./annotation/plasmodium-1092.xml\n",
+ "Fixed ./annotation/plasmodium-1132.xml\n",
+ "Fixed ./annotation/plasmodium-1796.xml\n",
+ "Fixed ./annotation/plasmodium-1488.xml\n",
+ "Fixed ./annotation/plasmodium-2361.xml\n",
+ "Fixed ./annotation/plasmodium-0103.xml\n",
+ "Fixed ./annotation/plasmodium-2162.xml\n",
+ "Fixed ./annotation/plasmodium-0699.xml\n",
+ "Fixed ./annotation/plasmodium-1638.xml\n",
+ "Fixed ./annotation/plasmodium-0062.xml\n",
+ "Fixed ./annotation/plasmodium-1072.xml\n",
+ "Fixed ./annotation/plasmodium-0468.xml\n",
+ "Fixed ./annotation/plasmodium-1501.xml\n",
+ "Fixed ./annotation/plasmodium-0318.xml\n",
+ "Fixed ./annotation/plasmodium-0015.xml\n",
+ "Fixed ./annotation/plasmodium-1179.xml\n",
+ "Fixed ./annotation/plasmodium-2067.xml\n",
+ "Fixed ./annotation/plasmodium-1411.xml\n",
+ "Fixed ./annotation/plasmodium-2615.xml\n",
+ "Fixed ./annotation/plasmodium-2434.xml\n",
+ "Fixed ./annotation/plasmodium-0125.xml\n",
+ "Fixed ./annotation/plasmodium-1446.xml\n",
+ "Fixed ./annotation/plasmodium-1177.xml\n",
+ "Fixed ./annotation/plasmodium-2339.xml\n",
+ "Fixed ./annotation/plasmodium-1747.xml\n",
+ "Fixed ./annotation/plasmodium-0549.xml\n",
+ "Fixed ./annotation/plasmodium-0698.xml\n",
+ "Fixed ./annotation/plasmodium-2340.xml\n",
+ "Fixed ./annotation/plasmodium-1389.xml\n",
+ "Fixed ./annotation/plasmodium-2441.xml\n",
+ "Fixed ./annotation/plasmodium-2297.xml\n",
+ "Fixed ./annotation/plasmodium-1233.xml\n",
+ "Fixed ./annotation/plasmodium-0787.xml\n",
+ "Fixed ./annotation/plasmodium-1267.xml\n",
+ "Fixed ./annotation/plasmodium-1884.xml\n",
+ "Fixed ./annotation/plasmodium-2660.xml\n",
+ "Fixed ./annotation/plasmodium-0886.xml\n",
+ "Fixed ./annotation/plasmodium-1349.xml\n",
+ "Fixed ./annotation/plasmodium-1677.xml\n",
+ "Fixed ./annotation/plasmodium-0235.xml\n",
+ "Fixed ./annotation/plasmodium-0855.xml\n",
+ "Fixed ./annotation/plasmodium-0826.xml\n",
+ "Fixed ./annotation/plasmodium-2619.xml\n",
+ "Fixed ./annotation/plasmodium-2010.xml\n",
+ "Fixed ./annotation/plasmodium-1303.xml\n",
+ "Fixed ./annotation/plasmodium-0620.xml\n",
+ "Fixed ./annotation/plasmodium-0819.xml\n",
+ "Fixed ./annotation/plasmodium-1485.xml\n",
+ "Fixed ./annotation/plasmodium-0901.xml\n",
+ "Fixed ./annotation/plasmodium-0551.xml\n",
+ "Fixed ./annotation/plasmodium-2575.xml\n",
+ "Fixed ./annotation/plasmodium-0948.xml\n",
+ "Fixed ./annotation/plasmodium-1566.xml\n",
+ "Fixed ./annotation/plasmodium-0179.xml\n",
+ "Fixed ./annotation/plasmodium-2036.xml\n",
+ "Fixed ./annotation/plasmodium-2354.xml\n",
+ "Fixed ./annotation/plasmodium-2209.xml\n",
+ "Fixed ./annotation/plasmodium-2452.xml\n",
+ "Fixed ./annotation/plasmodium-2269.xml\n",
+ "Fixed ./annotation/plasmodium-0477.xml\n",
+ "Fixed ./annotation/plasmodium-0200.xml\n",
+ "Fixed ./annotation/plasmodium-1837.xml\n",
+ "Fixed ./annotation/plasmodium-0315.xml\n",
+ "Fixed ./annotation/plasmodium-0979.xml\n",
+ "Fixed ./annotation/plasmodium-0288.xml\n",
+ "Fixed ./annotation/plasmodium-1370.xml\n",
+ "Fixed ./annotation/plasmodium-2208.xml\n",
+ "Fixed ./annotation/plasmodium-0562.xml\n",
+ "Fixed ./annotation/plasmodium-1384.xml\n",
+ "Fixed ./annotation/plasmodium-2491.xml\n",
+ "Fixed ./annotation/plasmodium-0750.xml\n",
+ "Fixed ./annotation/plasmodium-0827.xml\n",
+ "Fixed ./annotation/plasmodium-0624.xml\n",
+ "Fixed ./annotation/plasmodium-2154.xml\n",
+ "Fixed ./annotation/plasmodium-0748.xml\n",
+ "Fixed ./annotation/plasmodium-2278.xml\n",
+ "Fixed ./annotation/plasmodium-0893.xml\n",
+ "Fixed ./annotation/plasmodium-2688.xml\n",
+ "Fixed ./annotation/plasmodium-1515.xml\n",
+ "Fixed ./annotation/plasmodium-2057.xml\n",
+ "Fixed ./annotation/plasmodium-1285.xml\n",
+ "Fixed ./annotation/plasmodium-1782.xml\n",
+ "Fixed ./annotation/plasmodium-1657.xml\n",
+ "Fixed ./annotation/plasmodium-1763.xml\n",
+ "Fixed ./annotation/plasmodium-0984.xml\n",
+ "Fixed ./annotation/plasmodium-2100.xml\n",
+ "Fixed ./annotation/plasmodium-1431.xml\n",
+ "Fixed ./annotation/plasmodium-2207.xml\n",
+ "Fixed ./annotation/plasmodium-0263.xml\n",
+ "Fixed ./annotation/plasmodium-0751.xml\n",
+ "Fixed ./annotation/plasmodium-1592.xml\n",
+ "Fixed ./annotation/plasmodium-0381.xml\n",
+ "Fixed ./annotation/plasmodium-1443.xml\n",
+ "Fixed ./annotation/plasmodium-2666.xml\n",
+ "Fixed ./annotation/plasmodium-1531.xml\n",
+ "Fixed ./annotation/plasmodium-1141.xml\n",
+ "Fixed ./annotation/plasmodium-1121.xml\n",
+ "Fixed ./annotation/plasmodium-2324.xml\n",
+ "Fixed ./annotation/plasmodium-0762.xml\n",
+ "Fixed ./annotation/plasmodium-1397.xml\n",
+ "Fixed ./annotation/plasmodium-0140.xml\n",
+ "Fixed ./annotation/plasmodium-1500.xml\n",
+ "Fixed ./annotation/plasmodium-0520.xml\n",
+ "Fixed ./annotation/plasmodium-1062.xml\n",
+ "Fixed ./annotation/plasmodium-0833.xml\n",
+ "Fixed ./annotation/plasmodium-0539.xml\n",
+ "Fixed ./annotation/plasmodium-0410.xml\n",
+ "Fixed ./annotation/plasmodium-2082.xml\n",
+ "Fixed ./annotation/plasmodium-1880.xml\n",
+ "Fixed ./annotation/plasmodium-1079.xml\n",
+ "Fixed ./annotation/plasmodium-0052.xml\n",
+ "Fixed ./annotation/plasmodium-0126.xml\n",
+ "Fixed ./annotation/plasmodium-0939.xml\n",
+ "Fixed ./annotation/plasmodium-0173.xml\n",
+ "Fixed ./annotation/plasmodium-0458.xml\n",
+ "Fixed ./annotation/plasmodium-1011.xml\n",
+ "Fixed ./annotation/plasmodium-0243.xml\n",
+ "Fixed ./annotation/plasmodium-1927.xml\n",
+ "Fixed ./annotation/plasmodium-2218.xml\n",
+ "Fixed ./annotation/plasmodium-0488.xml\n",
+ "Fixed ./annotation/plasmodium-0749.xml\n",
+ "Fixed ./annotation/plasmodium-1737.xml\n",
+ "Fixed ./annotation/plasmodium-2225.xml\n",
+ "Fixed ./annotation/plasmodium-0677.xml\n",
+ "Fixed ./annotation/plasmodium-1641.xml\n",
+ "Fixed ./annotation/plasmodium-2132.xml\n",
+ "Fixed ./annotation/plasmodium-1526.xml\n",
+ "Fixed ./annotation/plasmodium-0237.xml\n",
+ "Fixed ./annotation/plasmodium-2605.xml\n",
+ "Fixed ./annotation/plasmodium-0735.xml\n",
+ "Fixed ./annotation/plasmodium-0115.xml\n",
+ "Fixed ./annotation/plasmodium-0857.xml\n",
+ "Fixed ./annotation/plasmodium-2314.xml\n",
+ "Fixed ./annotation/plasmodium-0924.xml\n",
+ "Fixed ./annotation/plasmodium-0906.xml\n",
+ "Fixed ./annotation/plasmodium-1343.xml\n",
+ "Fixed ./annotation/plasmodium-0136.xml\n",
+ "Fixed ./annotation/plasmodium-1540.xml\n",
+ "Fixed ./annotation/plasmodium-0191.xml\n",
+ "Fixed ./annotation/plasmodium-1183.xml\n",
+ "Fixed ./annotation/plasmodium-2187.xml\n",
+ "Fixed ./annotation/plasmodium-1402.xml\n",
+ "Fixed ./annotation/plasmodium-0297.xml\n",
+ "Fixed ./annotation/plasmodium-1598.xml\n",
+ "Fixed ./annotation/plasmodium-1612.xml\n",
+ "Fixed ./annotation/plasmodium-1441.xml\n",
+ "Fixed ./annotation/plasmodium-2512.xml\n",
+ "Fixed ./annotation/plasmodium-1279.xml\n",
+ "Fixed ./annotation/plasmodium-0837.xml\n",
+ "Fixed ./annotation/plasmodium-0253.xml\n",
+ "Fixed ./annotation/plasmodium-1674.xml\n",
+ "Fixed ./annotation/plasmodium-0959.xml\n",
+ "Fixed ./annotation/plasmodium-1581.xml\n",
+ "Fixed ./annotation/plasmodium-0147.xml\n",
+ "Fixed ./annotation/plasmodium-2655.xml\n",
+ "Fixed ./annotation/plasmodium-2139.xml\n",
+ "Fixed ./annotation/plasmodium-0119.xml\n",
+ "Fixed ./annotation/plasmodium-2590.xml\n",
+ "Fixed ./annotation/plasmodium-1752.xml\n",
+ "Fixed ./annotation/plasmodium-0912.xml\n",
+ "Fixed ./annotation/plasmodium-0220.xml\n",
+ "Fixed ./annotation/plasmodium-1301.xml\n",
+ "Fixed ./annotation/plasmodium-2035.xml\n",
+ "Fixed ./annotation/plasmodium-0534.xml\n",
+ "Fixed ./annotation/plasmodium-0545.xml\n",
+ "Fixed ./annotation/plasmodium-2330.xml\n",
+ "Fixed ./annotation/plasmodium-0130.xml\n",
+ "Fixed ./annotation/plasmodium-2311.xml\n",
+ "Fixed ./annotation/plasmodium-1333.xml\n",
+ "Fixed ./annotation/plasmodium-0366.xml\n",
+ "Fixed ./annotation/plasmodium-0586.xml\n",
+ "Fixed ./annotation/plasmodium-2445.xml\n",
+ "Fixed ./annotation/plasmodium-1232.xml\n",
+ "Fixed ./annotation/plasmodium-0128.xml\n",
+ "Fixed ./annotation/plasmodium-1634.xml\n",
+ "Fixed ./annotation/plasmodium-1650.xml\n",
+ "Fixed ./annotation/plasmodium-1918.xml\n",
+ "Fixed ./annotation/plasmodium-2690.xml\n",
+ "Fixed ./annotation/plasmodium-2600.xml\n",
+ "Fixed ./annotation/plasmodium-1429.xml\n",
+ "Fixed ./annotation/plasmodium-2439.xml\n",
+ "Fixed ./annotation/plasmodium-2213.xml\n",
+ "Fixed ./annotation/plasmodium-2323.xml\n",
+ "Fixed ./annotation/plasmodium-2043.xml\n",
+ "Fixed ./annotation/plasmodium-1153.xml\n",
+ "Fixed ./annotation/plasmodium-1878.xml\n",
+ "Fixed ./annotation/plasmodium-2118.xml\n",
+ "Fixed ./annotation/plasmodium-1293.xml\n",
+ "Fixed ./annotation/plasmodium-2501.xml\n",
+ "Fixed ./annotation/plasmodium-0409.xml\n",
+ "Fixed ./annotation/plasmodium-1820.xml\n",
+ "Fixed ./annotation/plasmodium-1367.xml\n",
+ "Fixed ./annotation/plasmodium-2216.xml\n",
+ "Fixed ./annotation/plasmodium-0829.xml\n",
+ "Fixed ./annotation/plasmodium-0451.xml\n",
+ "Fixed ./annotation/plasmodium-1908.xml\n",
+ "Fixed ./annotation/plasmodium-0791.xml\n",
+ "Fixed ./annotation/plasmodium-1772.xml\n",
+ "Fixed ./annotation/plasmodium-2013.xml\n",
+ "Fixed ./annotation/plasmodium-1703.xml\n",
+ "Fixed ./annotation/plasmodium-1138.xml\n",
+ "Fixed ./annotation/plasmodium-0486.xml\n",
+ "Fixed ./annotation/plasmodium-1597.xml\n",
+ "Fixed ./annotation/plasmodium-1864.xml\n",
+ "Fixed ./annotation/plasmodium-2572.xml\n",
+ "Fixed ./annotation/plasmodium-0974.xml\n",
+ "Fixed ./annotation/plasmodium-1803.xml\n",
+ "Fixed ./annotation/plasmodium-2538.xml\n",
+ "Fixed ./annotation/plasmodium-2041.xml\n",
+ "Fixed ./annotation/plasmodium-0096.xml\n",
+ "Fixed ./annotation/plasmodium-1466.xml\n",
+ "Fixed ./annotation/plasmodium-0688.xml\n",
+ "Fixed ./annotation/plasmodium-1299.xml\n",
+ "Fixed ./annotation/plasmodium-2037.xml\n",
+ "Fixed ./annotation/plasmodium-2092.xml\n",
+ "Fixed ./annotation/plasmodium-1017.xml\n",
+ "Fixed ./annotation/plasmodium-0859.xml\n",
+ "Fixed ./annotation/plasmodium-0279.xml\n",
+ "Fixed ./annotation/plasmodium-0472.xml\n",
+ "Fixed ./annotation/plasmodium-0019.xml\n",
+ "Fixed ./annotation/plasmodium-2473.xml\n",
+ "Fixed ./annotation/plasmodium-0448.xml\n",
+ "Fixed ./annotation/plasmodium-1562.xml\n",
+ "Fixed ./annotation/plasmodium-1691.xml\n",
+ "Fixed ./annotation/plasmodium-2164.xml\n",
+ "Fixed ./annotation/plasmodium-0342.xml\n",
+ "Fixed ./annotation/plasmodium-0588.xml\n",
+ "Fixed ./annotation/plasmodium-1083.xml\n",
+ "Fixed ./annotation/plasmodium-2638.xml\n",
+ "Fixed ./annotation/plasmodium-1656.xml\n",
+ "Fixed ./annotation/plasmodium-0298.xml\n",
+ "Fixed ./annotation/plasmodium-2219.xml\n",
+ "Fixed ./annotation/plasmodium-0642.xml\n",
+ "Fixed ./annotation/plasmodium-1479.xml\n",
+ "Fixed ./annotation/plasmodium-1780.xml\n",
+ "Fixed ./annotation/plasmodium-2276.xml\n",
+ "Fixed ./annotation/plasmodium-0025.xml\n",
+ "Fixed ./annotation/plasmodium-2620.xml\n",
+ "Fixed ./annotation/plasmodium-1919.xml\n",
+ "Fixed ./annotation/plasmodium-2014.xml\n",
+ "Fixed ./annotation/plasmodium-2635.xml\n",
+ "Fixed ./annotation/plasmodium-0945.xml\n",
+ "Fixed ./annotation/plasmodium-0908.xml\n",
+ "Fixed ./annotation/plasmodium-2535.xml\n",
+ "Fixed ./annotation/plasmodium-2639.xml\n",
+ "Fixed ./annotation/plasmodium-0004.xml\n",
+ "Fixed ./annotation/plasmodium-1305.xml\n",
+ "Fixed ./annotation/plasmodium-0362.xml\n",
+ "Fixed ./annotation/plasmodium-2143.xml\n",
+ "Fixed ./annotation/plasmodium-1754.xml\n",
+ "Fixed ./annotation/plasmodium-0785.xml\n",
+ "Fixed ./annotation/plasmodium-1379.xml\n",
+ "Fixed ./annotation/plasmodium-1100.xml\n",
+ "Fixed ./annotation/plasmodium-0035.xml\n",
+ "Fixed ./annotation/plasmodium-0433.xml\n",
+ "Fixed ./annotation/plasmodium-2565.xml\n",
+ "Fixed ./annotation/plasmodium-1270.xml\n",
+ "Fixed ./annotation/plasmodium-1753.xml\n",
+ "Fixed ./annotation/plasmodium-0244.xml\n",
+ "Fixed ./annotation/plasmodium-2696.xml\n",
+ "Fixed ./annotation/plasmodium-1744.xml\n",
+ "Fixed ./annotation/plasmodium-1766.xml\n",
+ "Fixed ./annotation/plasmodium-0227.xml\n",
+ "Fixed ./annotation/plasmodium-0646.xml\n",
+ "Fixed ./annotation/plasmodium-0357.xml\n",
+ "Fixed ./annotation/plasmodium-1129.xml\n",
+ "Fixed ./annotation/plasmodium-0419.xml\n",
+ "Fixed ./annotation/plasmodium-0766.xml\n",
+ "Fixed ./annotation/plasmodium-0481.xml\n",
+ "Fixed ./annotation/plasmodium-1220.xml\n",
+ "Fixed ./annotation/plasmodium-0643.xml\n",
+ "Fixed ./annotation/plasmodium-2637.xml\n",
+ "Fixed ./annotation/plasmodium-1897.xml\n",
+ "Fixed ./annotation/plasmodium-1859.xml\n",
+ "Fixed ./annotation/plasmodium-1300.xml\n",
+ "Fixed ./annotation/plasmodium-1128.xml\n",
+ "Fixed ./annotation/plasmodium-0560.xml\n",
+ "Fixed ./annotation/plasmodium-1096.xml\n",
+ "Fixed ./annotation/plasmodium-2377.xml\n",
+ "Fixed ./annotation/plasmodium-0432.xml\n",
+ "Fixed ./annotation/plasmodium-1077.xml\n",
+ "Fixed ./annotation/plasmodium-1626.xml\n",
+ "Fixed ./annotation/plasmodium-2514.xml\n",
+ "Fixed ./annotation/plasmodium-0950.xml\n",
+ "Fixed ./annotation/plasmodium-1028.xml\n",
+ "Fixed ./annotation/plasmodium-2684.xml\n",
+ "Fixed ./annotation/plasmodium-1793.xml\n",
+ "Fixed ./annotation/plasmodium-2369.xml\n",
+ "Fixed ./annotation/plasmodium-0591.xml\n",
+ "Fixed ./annotation/plasmodium-2034.xml\n",
+ "Fixed ./annotation/plasmodium-1035.xml\n",
+ "Fixed ./annotation/plasmodium-1705.xml\n",
+ "Fixed ./annotation/plasmodium-0404.xml\n",
+ "Fixed ./annotation/plasmodium-1883.xml\n",
+ "Fixed ./annotation/plasmodium-1065.xml\n",
+ "Fixed ./annotation/plasmodium-1708.xml\n",
+ "Fixed ./annotation/plasmodium-0265.xml\n",
+ "Fixed ./annotation/plasmodium-0491.xml\n",
+ "Fixed ./annotation/plasmodium-0382.xml\n",
+ "Fixed ./annotation/plasmodium-1996.xml\n",
+ "Fixed ./annotation/plasmodium-1486.xml\n",
+ "Fixed ./annotation/plasmodium-2084.xml\n",
+ "Fixed ./annotation/plasmodium-1302.xml\n",
+ "Fixed ./annotation/plasmodium-1572.xml\n",
+ "Fixed ./annotation/plasmodium-1609.xml\n",
+ "Fixed ./annotation/plasmodium-0676.xml\n",
+ "Fixed ./annotation/plasmodium-1140.xml\n",
+ "Fixed ./annotation/plasmodium-1931.xml\n",
+ "Fixed ./annotation/plasmodium-1240.xml\n",
+ "Fixed ./annotation/plasmodium-0540.xml\n",
+ "Fixed ./annotation/plasmodium-0963.xml\n",
+ "Fixed ./annotation/plasmodium-0630.xml\n",
+ "Fixed ./annotation/plasmodium-1004.xml\n",
+ "Fixed ./annotation/plasmodium-1104.xml\n",
+ "Fixed ./annotation/plasmodium-0796.xml\n",
+ "Fixed ./annotation/plasmodium-1933.xml\n",
+ "Fixed ./annotation/plasmodium-0129.xml\n",
+ "Fixed ./annotation/plasmodium-2579.xml\n",
+ "Fixed ./annotation/plasmodium-1805.xml\n",
+ "Fixed ./annotation/plasmodium-0478.xml\n",
+ "Fixed ./annotation/plasmodium-2694.xml\n",
+ "Fixed ./annotation/plasmodium-0329.xml\n",
+ "Fixed ./annotation/plasmodium-2674.xml\n",
+ "Fixed ./annotation/plasmodium-0037.xml\n",
+ "Fixed ./annotation/plasmodium-1350.xml\n",
+ "Fixed ./annotation/plasmodium-0594.xml\n",
+ "Fixed ./annotation/plasmodium-0369.xml\n",
+ "Fixed ./annotation/plasmodium-2475.xml\n",
+ "Fixed ./annotation/plasmodium-2448.xml\n",
+ "Fixed ./annotation/plasmodium-0665.xml\n",
+ "Fixed ./annotation/plasmodium-0854.xml\n",
+ "Fixed ./annotation/plasmodium-0014.xml\n",
+ "Fixed ./annotation/plasmodium-1110.xml\n",
+ "Fixed ./annotation/plasmodium-1764.xml\n",
+ "Fixed ./annotation/plasmodium-2227.xml\n",
+ "Fixed ./annotation/plasmodium-2464.xml\n",
+ "Fixed ./annotation/plasmodium-0890.xml\n",
+ "Fixed ./annotation/plasmodium-1180.xml\n",
+ "Fixed ./annotation/plasmodium-1495.xml\n",
+ "Fixed ./annotation/plasmodium-1513.xml\n",
+ "Fixed ./annotation/plasmodium-1492.xml\n",
+ "Fixed ./annotation/plasmodium-0359.xml\n",
+ "Fixed ./annotation/plasmodium-0802.xml\n",
+ "Fixed ./annotation/plasmodium-2397.xml\n",
+ "Fixed ./annotation/plasmodium-2423.xml\n",
+ "Fixed ./annotation/plasmodium-1168.xml\n",
+ "Fixed ./annotation/plasmodium-0805.xml\n",
+ "Fixed ./annotation/plasmodium-0070.xml\n",
+ "Fixed ./annotation/plasmodium-1451.xml\n",
+ "Fixed ./annotation/plasmodium-0428.xml\n",
+ "Fixed ./annotation/plasmodium-1403.xml\n",
+ "Fixed ./annotation/plasmodium-1649.xml\n",
+ "Fixed ./annotation/plasmodium-2177.xml\n",
+ "Fixed ./annotation/plasmodium-0795.xml\n",
+ "Fixed ./annotation/plasmodium-1164.xml\n",
+ "Fixed ./annotation/plasmodium-2554.xml\n",
+ "Fixed ./annotation/plasmodium-2072.xml\n",
+ "Fixed ./annotation/plasmodium-1813.xml\n",
+ "Fixed ./annotation/plasmodium-2586.xml\n",
+ "Fixed ./annotation/plasmodium-1016.xml\n",
+ "Fixed ./annotation/plasmodium-1748.xml\n",
+ "Fixed ./annotation/plasmodium-0988.xml\n",
+ "Fixed ./annotation/plasmodium-1869.xml\n",
+ "Fixed ./annotation/plasmodium-0553.xml\n",
+ "Fixed ./annotation/plasmodium-0582.xml\n",
+ "Fixed ./annotation/plasmodium-0711.xml\n",
+ "Fixed ./annotation/plasmodium-2344.xml\n",
+ "Fixed ./annotation/plasmodium-2121.xml\n",
+ "Fixed ./annotation/plasmodium-2618.xml\n",
+ "Fixed ./annotation/plasmodium-0201.xml\n",
+ "Fixed ./annotation/plasmodium-1490.xml\n",
+ "Fixed ./annotation/plasmodium-0073.xml\n",
+ "Fixed ./annotation/plasmodium-2495.xml\n",
+ "Fixed ./annotation/plasmodium-0215.xml\n",
+ "Fixed ./annotation/plasmodium-1746.xml\n",
+ "Fixed ./annotation/plasmodium-1839.xml\n",
+ "Fixed ./annotation/plasmodium-1287.xml\n",
+ "Fixed ./annotation/plasmodium-1519.xml\n",
+ "Fixed ./annotation/plasmodium-2689.xml\n",
+ "Fixed ./annotation/plasmodium-0174.xml\n",
+ "Fixed ./annotation/plasmodium-0629.xml\n",
+ "Fixed ./annotation/plasmodium-1895.xml\n",
+ "Fixed ./annotation/plasmodium-2093.xml\n",
+ "Fixed ./annotation/plasmodium-1553.xml\n",
+ "Fixed ./annotation/plasmodium-2604.xml\n",
+ "Fixed ./annotation/plasmodium-1317.xml\n",
+ "Fixed ./annotation/plasmodium-1313.xml\n",
+ "Fixed ./annotation/plasmodium-2309.xml\n",
+ "Fixed ./annotation/plasmodium-0806.xml\n",
+ "Fixed ./annotation/plasmodium-2665.xml\n",
+ "Fixed ./annotation/plasmodium-0067.xml\n",
+ "Fixed ./annotation/plasmodium-1229.xml\n",
+ "Fixed ./annotation/plasmodium-2626.xml\n",
+ "Fixed ./annotation/plasmodium-0416.xml\n",
+ "Fixed ./annotation/plasmodium-1725.xml\n",
+ "Fixed ./annotation/plasmodium-2021.xml\n",
+ "Fixed ./annotation/plasmodium-2017.xml\n",
+ "Fixed ./annotation/plasmodium-2346.xml\n",
+ "Fixed ./annotation/plasmodium-0031.xml\n",
+ "Fixed ./annotation/plasmodium-1699.xml\n",
+ "Fixed ./annotation/plasmodium-0271.xml\n",
+ "Fixed ./annotation/plasmodium-0797.xml\n",
+ "Fixed ./annotation/plasmodium-0650.xml\n",
+ "Fixed ./annotation/plasmodium-2698.xml\n",
+ "Fixed ./annotation/plasmodium-2189.xml\n",
+ "Fixed ./annotation/plasmodium-1449.xml\n",
+ "Fixed ./annotation/plasmodium-0877.xml\n",
+ "Fixed ./annotation/plasmodium-2612.xml\n",
+ "Fixed ./annotation/plasmodium-1866.xml\n",
+ "Fixed ./annotation/plasmodium-0403.xml\n",
+ "Fixed ./annotation/plasmodium-1082.xml\n",
+ "Fixed ./annotation/plasmodium-2071.xml\n",
+ "Fixed ./annotation/plasmodium-1736.xml\n",
+ "Fixed ./annotation/plasmodium-0332.xml\n",
+ "Fixed ./annotation/plasmodium-2214.xml\n",
+ "Fixed ./annotation/plasmodium-2522.xml\n",
+ "Fixed ./annotation/plasmodium-1195.xml\n",
+ "Fixed ./annotation/plasmodium-1169.xml\n",
+ "Fixed ./annotation/plasmodium-0739.xml\n",
+ "Fixed ./annotation/plasmodium-2060.xml\n",
+ "Fixed ./annotation/plasmodium-0139.xml\n",
+ "Fixed ./annotation/plasmodium-1851.xml\n",
+ "Fixed ./annotation/plasmodium-1696.xml\n",
+ "Fixed ./annotation/plasmodium-0633.xml\n",
+ "Fixed ./annotation/plasmodium-2129.xml\n",
+ "Fixed ./annotation/plasmodium-1338.xml\n",
+ "Fixed ./annotation/plasmodium-1236.xml\n",
+ "Fixed ./annotation/plasmodium-1358.xml\n",
+ "Fixed ./annotation/plasmodium-1014.xml\n",
+ "Fixed ./annotation/plasmodium-0430.xml\n",
+ "Fixed ./annotation/plasmodium-1758.xml\n",
+ "Fixed ./annotation/plasmodium-1334.xml\n"
+ ],
+ "name": "stdout"
+ }
+ ]
+ },
+ {
+ "cell_type": "markdown",
+ "metadata": {
+ "id": "2u872ZKKeZ8h",
+ "colab_type": "text"
+ },
+ "source": [
+ "### 5) Download pregenerated csv file\n",
+ "\n",
+ "The annotations.csv file was created using RectLabel"
+ ]
+ },
+ {
+ "cell_type": "code",
+ "metadata": {
+ "id": "EpFSdUGALaop",
+ "colab_type": "code",
+ "outputId": "92726632-bae5-41e5-873d-397a9e47a4cc",
+ "colab": {
+ "base_uri": "https://localhost:8080/",
+ "height": 235
+ }
+ },
+ "source": [
+ "!wget https://gist.githubusercontent.com/navanchauhan/dd91c089c743217868a00d68c9b7d3fe/raw/1b61cbc39d8a7406f2fbb2d687d34820aa063054/annotations.csv"
+ ],
+ "execution_count": 0,
+ "outputs": [
+ {
+ "output_type": "stream",
+ "text": [
+ "--2019-11-05 00:45:49-- https://gist.githubusercontent.com/navanchauhan/dd91c089c743217868a00d68c9b7d3fe/raw/1b61cbc39d8a7406f2fbb2d687d34820aa063054/annotations.csv\n",
+ "Resolving gist.githubusercontent.com (gist.githubusercontent.com)... 151.101.0.133, 151.101.64.133, 151.101.128.133, ...\n",
+ "Connecting to gist.githubusercontent.com (gist.githubusercontent.com)|151.101.0.133|:443... connected.\n",
+ "HTTP request sent, awaiting response... 200 OK\n",
+ "Length: 5091493 (4.9M) [text/plain]\n",
+ "Saving to: ‘annotations.csv’\n",
+ "\n",
+ "\rannotations.csv 0%[ ] 0 --.-KB/s \rannotations.csv 100%[===================>] 4.86M --.-KB/s in 0.04s \n",
+ "\n",
+ "2019-11-05 00:45:49 (137 MB/s) - ‘annotations.csv’ saved [5091493/5091493]\n",
+ "\n"
+ ],
+ "name": "stdout"
+ }
+ ]
+ },
+ {
+ "cell_type": "markdown",
+ "metadata": {
+ "id": "Qem0xslven3Y",
+ "colab_type": "text"
+ },
+ "source": [
+ "### 6) Change Absolute Path to Relative Path"
+ ]
+ },
+ {
+ "cell_type": "code",
+ "metadata": {
+ "id": "TWPJ8zVsMoEP",
+ "colab_type": "code",
+ "colab": {}
+ },
+ "source": [
+ "def replaceIt(filename, old, new):\n",
+ "\tf = open(filename,'r')\n",
+ "\tfiledata = f.read()\n",
+ "\tf.close()\n",
+ "\tnewdata = filedata.replace(old,new)\n",
+ "\tf = open(filename,'w')\n",
+ "\tf.write(newdata)\n",
+ "\tf.close()\n",
+ "\n",
+ "replaceIt(\"./annotations.csv\",\"/Users/navanchauhan/Downloads/malaria-data-object/plasmodium-images/images\",\"./images\")\n"
+ ],
+ "execution_count": 0,
+ "outputs": []
+ },
+ {
+ "cell_type": "markdown",
+ "metadata": {
+ "id": "7bfuY1ISeuFN",
+ "colab_type": "text"
+ },
+ "source": [
+ "### 7) Train Model"
+ ]
+ },
+ {
+ "cell_type": "code",
+ "metadata": {
+ "id": "RLSloYzNMrQG",
+ "colab_type": "code",
+ "outputId": "2c0b2088-8da7-43a3-c01e-3f7b856f7f62",
+ "colab": {
+ "base_uri": "https://localhost:8080/",
+ "height": 1000
+ }
+ },
+ "source": [
+ "import turicreate as tc\n",
+ "import sys\n",
+ "import os\n",
+ "\n",
+ "tc.config.set_num_gpus(-1)\n",
+ "\n",
+ "csv_file = './annotations.csv'\n",
+ "csv = tc.SFrame(csv_file)\n",
+ "\n",
+ "image_path = csv['path'][0]\n",
+ "image_folder = str(os.path.split(image_path)[0])\n",
+ "\n",
+ "data = tc.image_analysis.load_images(image_folder, recursive=False)\n",
+ "data = data.join(csv)\n",
+ "\n",
+ "train, val = data.random_split(0.8)\n",
+ "\n",
+ "model = tc.object_detector.create(train, max_iterations=10000)\n",
+ "\n",
+ "\n",
+ "model.save('plasmodium.model')\n",
+ "model.export_coreml('plasmodium.mlmodel')\n",
+ "\n",
+ "scores = model.evaluate(val)\n",
+ "print(scores)\n"
+ ],
+ "execution_count": 0,
+ "outputs": [
+ {
+ "output_type": "display_data",
+ "data": {
+ "text/html": [
+ "<pre>Finished parsing file /content/annotations.csv</pre>"
+ ],
+ "text/plain": [
+ "Finished parsing file /content/annotations.csv"
+ ]
+ },
+ "metadata": {
+ "tags": []
+ }
+ },
+ {
+ "output_type": "display_data",
+ "data": {
+ "text/html": [
+ "<pre>Parsing completed. Parsed 100 lines in 0.24289 secs.</pre>"
+ ],
+ "text/plain": [
+ "Parsing completed. Parsed 100 lines in 0.24289 secs."
+ ]
+ },
+ "metadata": {
+ "tags": []
+ }
+ },
+ {
+ "output_type": "stream",
+ "text": [
+ "------------------------------------------------------\n",
+ "Inferred types from first 100 line(s) of file as \n",
+ "column_type_hints=[str,list]\n",
+ "If parsing fails due to incorrect types, you can correct\n",
+ "the inferred type list above and pass it to read_csv in\n",
+ "the column_type_hints argument\n",
+ "------------------------------------------------------\n"
+ ],
+ "name": "stdout"
+ },
+ {
+ "output_type": "display_data",
+ "data": {
+ "text/html": [
+ "<pre>Finished parsing file /content/annotations.csv</pre>"
+ ],
+ "text/plain": [
+ "Finished parsing file /content/annotations.csv"
+ ]
+ },
+ "metadata": {
+ "tags": []
+ }
+ },
+ {
+ "output_type": "display_data",
+ "data": {
+ "text/html": [
+ "<pre>Parsing completed. Parsed 2703 lines in 0.24236 secs.</pre>"
+ ],
+ "text/plain": [
+ "Parsing completed. Parsed 2703 lines in 0.24236 secs."
+ ]
+ },
+ "metadata": {
+ "tags": []
+ }
+ },
+ {
+ "output_type": "stream",
+ "text": [
+ "WARNING: You are using MXNet 1.4.0 which may result in breaking behavior.\n",
+ " To fix this, please install the currently recommended version:\n",
+ "\n",
+ " pip uninstall -y mxnet && pip install mxnet==1.1.0\n",
+ "\n",
+ " If you want to use a CUDA GPU, then change 'mxnet' to 'mxnet-cu90' (adjust 'cu90' depending on your CUDA version):\n",
+ "\n",
+ "Using 'image' as feature column\n",
+ "Using 'annotations' as annotations column\n",
+ "Downloading https://docs-assets.developer.apple.com/turicreate/models/darknet.params\n",
+ "Download completed: /var/tmp/model_cache/darknet.params\n",
+ "Setting 'batch_size' to 32\n",
+ "Using GPU to create model (Tesla P100-PCIE-16GB)\n",
+ "+--------------+--------------+--------------+\n",
+ "| Iteration | Loss | Elapsed Time |\n",
+ "+--------------+--------------+--------------+\n",
+ "| 1 | 11.321 | 14.5 |\n",
+ "| 6 | 11.964 | 26.9 |\n",
+ "| 11 | 11.867 | 39.4 |\n",
+ "| 15 | 11.222 | 49.7 |\n",
+ "| 19 | 11.003 | 60.2 |\n",
+ "| 23 | 10.262 | 70.4 |\n",
+ "| 28 | 9.847 | 82.6 |\n",
+ "| 32 | 9.412 | 92.8 |\n",
+ "| 37 | 8.674 | 104.9 |\n",
+ "| 42 | 8.017 | 117.1 |\n",
+ "| 47 | 7.422 | 129.5 |\n",
+ "| 51 | 7.114 | 139.6 |\n",
+ "| 56 | 6.843 | 152.0 |\n",
+ "| 61 | 6.808 | 164.1 |\n",
+ "| 65 | 6.436 | 174.2 |\n",
+ "| 69 | 6.504 | 184.8 |\n",
+ "| 74 | 6.282 | 197.0 |\n",
+ "| 79 | 6.067 | 209.3 |\n",
+ "| 83 | 5.963 | 219.5 |\n",
+ "| 88 | 6.025 | 231.9 |\n",
+ "| 93 | 6.185 | 244.0 |\n",
+ "| 98 | 6.007 | 256.5 |\n",
+ "| 103 | 5.922 | 268.7 |\n",
+ "| 108 | 5.832 | 281.1 |\n",
+ "| 113 | 5.542 | 293.2 |\n",
+ "| 117 | 5.619 | 303.2 |\n",
+ "| 122 | 5.946 | 315.3 |\n",
+ "| 127 | 5.938 | 327.5 |\n",
+ "| 132 | 5.881 | 339.9 |\n",
+ "| 137 | 5.716 | 352.7 |\n",
+ "| 141 | 5.286 | 362.8 |\n",
+ "| 146 | 5.581 | 374.8 |\n",
+ "| 151 | 5.496 | 387.2 |\n",
+ "| 156 | 5.624 | 399.5 |\n",
+ "| 161 | 5.667 | 411.6 |\n",
+ "| 166 | 5.578 | 423.8 |\n",
+ "| 171 | 5.675 | 436.3 |\n",
+ "| 176 | 5.682 | 448.3 |\n",
+ "| 181 | 5.621 | 460.4 |\n",
+ "| 186 | 5.520 | 472.6 |\n",
+ "| 191 | 5.539 | 484.8 |\n",
+ "| 195 | 5.635 | 494.9 |\n",
+ "| 200 | 5.518 | 507.1 |\n",
+ "| 205 | 5.383 | 519.9 |\n",
+ "| 210 | 5.394 | 532.2 |\n",
+ "| 214 | 5.661 | 542.3 |\n",
+ "| 218 | 5.843 | 552.3 |\n",
+ "| 223 | 5.539 | 564.4 |\n",
+ "| 228 | 5.513 | 576.7 |\n",
+ "| 233 | 5.377 | 589.1 |\n",
+ "| 238 | 5.409 | 601.4 |\n",
+ "| 243 | 5.086 | 613.5 |\n",
+ "| 248 | 5.315 | 625.8 |\n",
+ "| 253 | 5.525 | 638.0 |\n",
+ "| 258 | 5.241 | 650.1 |\n",
+ "| 263 | 5.364 | 662.2 |\n",
+ "| 268 | 5.414 | 674.1 |\n",
+ "| 273 | 5.359 | 686.5 |\n",
+ "| 278 | 5.366 | 698.6 |\n",
+ "| 283 | 5.019 | 710.8 |\n",
+ "| 288 | 5.301 | 722.9 |\n",
+ "| 293 | 5.207 | 734.8 |\n",
+ "| 298 | 4.881 | 746.9 |\n",
+ "| 303 | 5.331 | 759.2 |\n",
+ "| 308 | 5.575 | 771.5 |\n",
+ "| 313 | 5.477 | 783.7 |\n",
+ "| 318 | 5.481 | 796.0 |\n",
+ "| 323 | 5.288 | 807.9 |\n",
+ "| 328 | 5.290 | 820.0 |\n",
+ "| 333 | 5.211 | 832.2 |\n",
+ "| 338 | 5.416 | 844.3 |\n",
+ "| 342 | 5.432 | 854.7 |\n",
+ "| 347 | 5.150 | 866.8 |\n",
+ "| 352 | 5.276 | 878.9 |\n",
+ "| 357 | 5.267 | 891.2 |\n",
+ "| 362 | 5.101 | 903.6 |\n",
+ "| 367 | 5.168 | 915.6 |\n",
+ "| 371 | 5.182 | 925.9 |\n",
+ "| 376 | 5.069 | 938.0 |\n",
+ "| 381 | 5.345 | 950.2 |\n",
+ "| 386 | 5.367 | 962.1 |\n",
+ "| 391 | 4.857 | 974.4 |\n",
+ "| 396 | 5.069 | 986.6 |\n",
+ "| 401 | 5.216 | 999.0 |\n",
+ "| 406 | 5.087 | 1011.3 |\n",
+ "| 410 | 5.050 | 1021.9 |\n",
+ "| 415 | 5.280 | 1034.1 |\n",
+ "| 420 | 5.347 | 1046.4 |\n",
+ "| 424 | 5.162 | 1056.5 |\n",
+ "| 429 | 5.069 | 1068.5 |\n",
+ "| 434 | 4.889 | 1080.8 |\n",
+ "| 439 | 5.035 | 1092.9 |\n",
+ "| 444 | 5.011 | 1105.3 |\n",
+ "| 448 | 4.905 | 1115.4 |\n",
+ "| 453 | 5.238 | 1127.6 |\n",
+ "| 458 | 5.259 | 1139.8 |\n",
+ "| 462 | 5.240 | 1149.9 |\n",
+ "| 467 | 5.046 | 1161.8 |\n",
+ "| 472 | 5.191 | 1174.0 |\n",
+ "| 477 | 5.103 | 1186.2 |\n",
+ "| 481 | 4.822 | 1196.3 |\n",
+ "| 486 | 5.067 | 1208.3 |\n",
+ "| 490 | 5.055 | 1218.4 |\n",
+ "| 495 | 5.016 | 1230.5 |\n",
+ "| 500 | 5.178 | 1242.7 |\n",
+ "| 505 | 5.261 | 1254.7 |\n",
+ "| 510 | 5.027 | 1267.0 |\n",
+ "| 515 | 5.014 | 1279.1 |\n",
+ "| 520 | 4.766 | 1291.4 |\n",
+ "| 525 | 4.762 | 1303.5 |\n",
+ "| 529 | 4.912 | 1313.6 |\n",
+ "| 534 | 5.349 | 1325.6 |\n",
+ "| 539 | 5.245 | 1338.0 |\n",
+ "| 544 | 5.019 | 1350.1 |\n",
+ "| 548 | 4.808 | 1360.7 |\n",
+ "| 553 | 4.693 | 1372.8 |\n",
+ "| 558 | 4.756 | 1384.9 |\n",
+ "| 563 | 4.790 | 1397.0 |\n",
+ "| 568 | 4.923 | 1409.3 |\n",
+ "| 573 | 5.030 | 1421.5 |\n",
+ "| 578 | 5.034 | 1433.8 |\n",
+ "| 583 | 5.111 | 1445.8 |\n",
+ "| 588 | 4.899 | 1458.1 |\n",
+ "| 593 | 5.177 | 1470.3 |\n",
+ "| 598 | 5.081 | 1482.5 |\n",
+ "| 603 | 4.922 | 1494.8 |\n",
+ "| 607 | 5.204 | 1504.8 |\n",
+ "| 611 | 5.070 | 1514.9 |\n",
+ "| 615 | 4.923 | 1525.2 |\n",
+ "| 620 | 4.796 | 1536.9 |\n",
+ "| 625 | 5.003 | 1549.1 |\n",
+ "| 630 | 4.980 | 1561.3 |\n",
+ "| 635 | 5.279 | 1573.6 |\n",
+ "| 640 | 5.200 | 1585.8 |\n",
+ "| 645 | 5.158 | 1598.0 |\n",
+ "| 650 | 5.233 | 1610.1 |\n",
+ "| 654 | 5.037 | 1620.3 |\n",
+ "| 659 | 5.218 | 1632.6 |\n",
+ "| 664 | 5.001 | 1644.8 |\n",
+ "| 669 | 4.818 | 1657.0 |\n",
+ "| 673 | 4.809 | 1667.1 |\n",
+ "| 678 | 4.772 | 1679.4 |\n",
+ "| 683 | 4.500 | 1691.8 |\n",
+ "| 688 | 4.648 | 1703.9 |\n",
+ "| 693 | 4.749 | 1716.2 |\n",
+ "| 698 | 4.911 | 1728.0 |\n",
+ "| 703 | 4.874 | 1740.1 |\n",
+ "| 708 | 5.062 | 1752.2 |\n",
+ "| 713 | 4.879 | 1764.5 |\n",
+ "| 718 | 4.925 | 1776.5 |\n",
+ "| 722 | 4.643 | 1786.6 |\n",
+ "| 727 | 4.587 | 1798.6 |\n",
+ "| 732 | 4.445 | 1811.0 |\n",
+ "| 737 | 4.766 | 1823.4 |\n",
+ "| 742 | 5.220 | 1835.7 |\n",
+ "| 747 | 5.237 | 1847.8 |\n",
+ "| 751 | 5.133 | 1857.8 |\n",
+ "| 756 | 5.017 | 1870.1 |\n",
+ "| 761 | 4.931 | 1882.4 |\n",
+ "| 766 | 4.942 | 1894.7 |\n",
+ "| 771 | 4.786 | 1906.9 |\n",
+ "| 776 | 4.912 | 1918.9 |\n",
+ "| 781 | 4.803 | 1931.2 |\n",
+ "| 786 | 4.612 | 1943.2 |\n",
+ "| 791 | 4.755 | 1955.5 |\n",
+ "| 796 | 4.678 | 1967.5 |\n",
+ "| 801 | 4.834 | 1979.5 |\n",
+ "| 806 | 4.875 | 1991.8 |\n",
+ "| 811 | 4.904 | 2003.8 |\n",
+ "| 816 | 4.807 | 2015.8 |\n",
+ "| 820 | 4.649 | 2026.1 |\n",
+ "| 825 | 4.935 | 2038.6 |\n",
+ "| 830 | 4.691 | 2050.5 |\n",
+ "| 835 | 4.697 | 2062.9 |\n",
+ "| 840 | 4.892 | 2075.2 |\n",
+ "| 845 | 4.974 | 2087.3 |\n",
+ "| 850 | 4.884 | 2099.6 |\n",
+ "| 855 | 4.801 | 2111.4 |\n",
+ "| 860 | 4.678 | 2123.6 |\n",
+ "| 865 | 4.883 | 2135.4 |\n",
+ "| 870 | 4.709 | 2147.7 |\n",
+ "| 875 | 4.780 | 2159.9 |\n",
+ "| 880 | 4.737 | 2172.2 |\n",
+ "| 885 | 4.724 | 2184.6 |\n",
+ "| 889 | 4.744 | 2194.9 |\n",
+ "| 894 | 4.909 | 2206.7 |\n",
+ "| 899 | 4.993 | 2218.9 |\n",
+ "| 904 | 4.972 | 2231.0 |\n",
+ "| 909 | 4.614 | 2242.8 |\n",
+ "| 914 | 4.739 | 2254.9 |\n",
+ "| 919 | 4.720 | 2267.0 |\n",
+ "| 924 | 4.630 | 2279.0 |\n",
+ "| 928 | 4.713 | 2289.0 |\n",
+ "| 933 | 4.643 | 2300.8 |\n",
+ "| 937 | 4.903 | 2310.8 |\n",
+ "| 942 | 4.635 | 2322.9 |\n",
+ "| 947 | 5.138 | 2335.0 |\n",
+ "| 952 | 4.815 | 2347.0 |\n",
+ "| 956 | 4.762 | 2357.3 |\n",
+ "| 960 | 4.958 | 2367.3 |\n",
+ "| 965 | 4.756 | 2379.4 |\n",
+ "| 969 | 4.838 | 2389.5 |\n",
+ "| 974 | 4.943 | 2401.5 |\n",
+ "| 979 | 4.934 | 2413.9 |\n",
+ "| 983 | 4.818 | 2423.9 |\n",
+ "| 988 | 5.022 | 2436.0 |\n",
+ "| 993 | 4.716 | 2448.1 |\n",
+ "| 998 | 4.665 | 2460.1 |\n",
+ "| 1002 | 4.661 | 2470.1 |\n",
+ "| 1007 | 4.538 | 2482.3 |\n",
+ "| 1012 | 4.757 | 2494.2 |\n",
+ "| 1017 | 4.946 | 2506.1 |\n",
+ "| 1022 | 5.060 | 2518.4 |\n",
+ "| 1026 | 4.975 | 2528.7 |\n",
+ "| 1031 | 4.871 | 2540.5 |\n",
+ "| 1035 | 5.013 | 2550.5 |\n",
+ "| 1040 | 4.897 | 2562.8 |\n",
+ "| 1044 | 4.760 | 2572.8 |\n",
+ "| 1049 | 4.754 | 2584.9 |\n",
+ "| 1054 | 4.918 | 2597.1 |\n",
+ "| 1059 | 4.900 | 2609.2 |\n",
+ "| 1064 | 5.072 | 2621.3 |\n",
+ "| 1068 | 4.952 | 2631.4 |\n",
+ "| 1072 | 4.926 | 2641.4 |\n",
+ "| 1077 | 4.511 | 2653.6 |\n",
+ "| 1082 | 4.663 | 2665.6 |\n",
+ "| 1087 | 4.735 | 2677.8 |\n",
+ "| 1092 | 4.630 | 2690.1 |\n",
+ "| 1097 | 4.851 | 2702.4 |\n",
+ "| 1102 | 4.832 | 2714.8 |\n",
+ "| 1107 | 4.656 | 2726.6 |\n",
+ "| 1112 | 4.582 | 2739.2 |\n",
+ "| 1117 | 4.452 | 2751.6 |\n",
+ "| 1121 | 4.568 | 2761.6 |\n",
+ "| 1126 | 4.520 | 2773.9 |\n",
+ "| 1131 | 4.515 | 2786.1 |\n",
+ "| 1136 | 4.426 | 2798.0 |\n",
+ "| 1141 | 4.651 | 2810.2 |\n",
+ "| 1146 | 4.853 | 2822.0 |\n",
+ "| 1151 | 4.807 | 2834.2 |\n",
+ "| 1156 | 4.840 | 2846.4 |\n",
+ "| 1160 | 4.956 | 2856.7 |\n",
+ "| 1165 | 4.866 | 2868.9 |\n",
+ "| 1170 | 4.729 | 2881.4 |\n",
+ "| 1175 | 4.589 | 2893.5 |\n",
+ "| 1180 | 4.726 | 2905.7 |\n",
+ "| 1185 | 4.637 | 2917.5 |\n",
+ "| 1190 | 4.751 | 2929.6 |\n",
+ "| 1195 | 4.707 | 2941.6 |\n",
+ "| 1200 | 4.894 | 2954.1 |\n",
+ "| 1205 | 4.926 | 2966.5 |\n",
+ "| 1210 | 4.880 | 2978.7 |\n",
+ "| 1215 | 4.857 | 2990.8 |\n",
+ "| 1220 | 4.917 | 3003.0 |\n",
+ "| 1225 | 4.593 | 3014.9 |\n",
+ "| 1229 | 4.788 | 3025.2 |\n",
+ "| 1234 | 4.897 | 3037.4 |\n",
+ "| 1239 | 4.940 | 3049.7 |\n",
+ "| 1244 | 4.822 | 3061.8 |\n",
+ "| 1249 | 4.610 | 3074.1 |\n",
+ "| 1254 | 4.669 | 3086.4 |\n",
+ "| 1259 | 4.834 | 3098.7 |\n",
+ "| 1264 | 4.753 | 3110.8 |\n",
+ "| 1268 | 4.724 | 3120.9 |\n",
+ "| 1273 | 4.989 | 3132.9 |\n",
+ "| 1278 | 4.754 | 3145.1 |\n",
+ "| 1283 | 4.451 | 3157.0 |\n",
+ "| 1288 | 4.617 | 3169.1 |\n",
+ "| 1293 | 4.431 | 3181.1 |\n",
+ "| 1297 | 4.393 | 3191.4 |\n",
+ "| 1302 | 4.542 | 3203.8 |\n",
+ "| 1307 | 4.581 | 3215.9 |\n",
+ "| 1312 | 4.599 | 3228.0 |\n",
+ "| 1317 | 4.912 | 3240.0 |\n",
+ "| 1322 | 4.569 | 3252.1 |\n",
+ "| 1327 | 4.539 | 3264.2 |\n",
+ "| 1332 | 4.609 | 3276.2 |\n",
+ "| 1337 | 4.573 | 3288.3 |\n",
+ "| 1342 | 4.695 | 3300.0 |\n",
+ "| 1347 | 4.993 | 3312.2 |\n",
+ "| 1351 | 4.789 | 3322.4 |\n",
+ "| 1356 | 4.552 | 3334.5 |\n",
+ "| 1361 | 4.445 | 3346.8 |\n",
+ "| 1365 | 4.303 | 3357.0 |\n",
+ "| 1370 | 4.837 | 3369.2 |\n",
+ "| 1374 | 4.752 | 3379.2 |\n",
+ "| 1378 | 4.631 | 3389.3 |\n",
+ "| 1383 | 4.732 | 3401.5 |\n",
+ "| 1388 | 4.764 | 3413.7 |\n",
+ "| 1393 | 4.848 | 3425.7 |\n",
+ "| 1398 | 4.764 | 3437.9 |\n",
+ "| 1403 | 4.706 | 3449.9 |\n",
+ "| 1408 | 4.625 | 3462.0 |\n",
+ "| 1413 | 4.633 | 3473.8 |\n",
+ "| 1418 | 4.642 | 3485.7 |\n",
+ "| 1423 | 4.807 | 3497.6 |\n",
+ "| 1428 | 4.748 | 3509.7 |\n",
+ "| 1433 | 4.634 | 3522.4 |\n",
+ "| 1438 | 4.506 | 3534.3 |\n",
+ "| 1443 | 4.458 | 3546.5 |\n",
+ "| 1448 | 4.467 | 3558.6 |\n",
+ "| 1453 | 4.534 | 3570.8 |\n",
+ "| 1458 | 4.512 | 3583.1 |\n",
+ "| 1463 | 4.847 | 3595.3 |\n",
+ "| 1468 | 4.934 | 3607.2 |\n",
+ "| 1473 | 4.617 | 3619.3 |\n",
+ "| 1478 | 4.558 | 3631.4 |\n",
+ "| 1483 | 4.370 | 3643.3 |\n",
+ "| 1488 | 4.513 | 3655.6 |\n",
+ "| 1493 | 4.741 | 3667.8 |\n",
+ "| 1498 | 4.770 | 3679.8 |\n",
+ "| 1502 | 4.922 | 3690.2 |\n",
+ "| 1507 | 4.840 | 3702.2 |\n",
+ "| 1512 | 4.630 | 3714.6 |\n",
+ "| 1517 | 4.745 | 3726.4 |\n",
+ "| 1522 | 4.882 | 3738.8 |\n",
+ "| 1527 | 4.777 | 3750.8 |\n",
+ "| 1532 | 4.806 | 3763.1 |\n",
+ "| 1537 | 4.762 | 3775.2 |\n",
+ "| 1542 | 4.943 | 3787.3 |\n",
+ "| 1547 | 4.868 | 3799.2 |\n",
+ "| 1552 | 4.714 | 3811.4 |\n",
+ "| 1557 | 4.779 | 3823.6 |\n",
+ "| 1562 | 4.724 | 3835.6 |\n",
+ "| 1567 | 4.729 | 3847.7 |\n",
+ "| 1571 | 4.696 | 3857.8 |\n",
+ "| 1576 | 4.756 | 3869.7 |\n",
+ "| 1581 | 4.466 | 3881.7 |\n",
+ "| 1586 | 4.553 | 3893.8 |\n",
+ "| 1591 | 4.893 | 3906.0 |\n",
+ "| 1595 | 4.924 | 3916.1 |\n",
+ "| 1600 | 4.813 | 3928.3 |\n",
+ "| 1605 | 4.638 | 3940.5 |\n",
+ "| 1609 | 4.594 | 3950.5 |\n",
+ "| 1614 | 4.558 | 3962.5 |\n",
+ "| 1619 | 4.752 | 3974.9 |\n",
+ "| 1624 | 4.715 | 3987.2 |\n",
+ "| 1628 | 4.813 | 3997.3 |\n",
+ "| 1633 | 4.696 | 4009.6 |\n",
+ "| 1638 | 4.782 | 4022.5 |\n",
+ "| 1643 | 4.556 | 4034.5 |\n",
+ "| 1648 | 4.567 | 4046.9 |\n",
+ "| 1653 | 4.696 | 4059.1 |\n"
+ ],
+ "name": "stdout"
+ }
+ ]
+ },
+ {
+ "cell_type": "markdown",
+ "metadata": {
+ "id": "_FV4qUCDfr77",
+ "colab_type": "text"
+ },
+ "source": [
+ "### 8) Exporting Model for Conversion\n",
+ "\n",
+ "ONNX currently does not support non maximum suppression "
+ ]
+ },
+ {
+ "cell_type": "code",
+ "metadata": {
+ "id": "Prxsg2pdQ0AT",
+ "colab_type": "code",
+ "colab": {}
+ },
+ "source": [
+ "model.export_coreml('plasmodium-for-onnx.mlmodel', include_non_maximum_suppression=False)"
+ ],
+ "execution_count": 0,
+ "outputs": []
+ },
+ {
+ "cell_type": "markdown",
+ "metadata": {
+ "id": "VTNCsGwegDeP",
+ "colab_type": "text"
+ },
+ "source": [
+ "### 9) Save to Google Drive\n"
+ ]
+ },
+ {
+ "cell_type": "code",
+ "metadata": {
+ "id": "M3zccxx6fVt4",
+ "colab_type": "code",
+ "colab": {}
+ },
+ "source": [
+ "!cp \"./plasmodium-for-onnx.mlmodel\" \"/content/gdrive/My Drive/.\""
+ ],
+ "execution_count": 0,
+ "outputs": []
+ },
+ {
+ "cell_type": "markdown",
+ "metadata": {
+ "id": "dCy_Y5ZLh3O2",
+ "colab_type": "text"
+ },
+ "source": [
+ "### 10) Installing ONNX and converting model"
+ ]
+ },
+ {
+ "cell_type": "code",
+ "metadata": {
+ "id": "I9gf1C11yo93",
+ "colab_type": "code",
+ "outputId": "5c562a2d-c920-4fed-a04a-31c24705654c",
+ "colab": {
+ "base_uri": "https://localhost:8080/",
+ "height": 415
+ }
+ },
+ "source": [
+ "!pip install onnx coremltools onnxmltools"
+ ],
+ "execution_count": 0,
+ "outputs": [
+ {
+ "output_type": "stream",
+ "text": [
+ "Requirement already satisfied: onnx in /usr/local/lib/python3.6/dist-packages (1.6.0)\n",
+ "Requirement already satisfied: coremltools in /usr/local/lib/python3.6/dist-packages (3.0b3)\n",
+ "Requirement already satisfied: onnxmltools in /usr/local/lib/python3.6/dist-packages (1.5.1)\n",
+ "Requirement already satisfied: typing-extensions>=3.6.2.1 in /usr/local/lib/python3.6/dist-packages (from onnx) (3.6.6)\n",
+ "Requirement already satisfied: numpy in /usr/local/lib/python3.6/dist-packages (from onnx) (1.14.6)\n",
+ "Requirement already satisfied: six in /usr/local/lib/python3.6/dist-packages (from onnx) (1.12.0)\n",
+ "Requirement already satisfied: protobuf in /usr/local/lib/python3.6/dist-packages (from onnx) (3.10.0)\n",
+ "Requirement already satisfied: keras2onnx in /usr/local/lib/python3.6/dist-packages (from onnxmltools) (1.6.0)\n",
+ "Requirement already satisfied: skl2onnx in /usr/local/lib/python3.6/dist-packages (from onnxmltools) (1.5.2)\n",
+ "Requirement already satisfied: onnxconverter-common>=1.5.0 in /usr/local/lib/python3.6/dist-packages (from onnxmltools) (1.6.0)\n",
+ "Requirement already satisfied: setuptools in /usr/local/lib/python3.6/dist-packages (from protobuf->onnx) (41.4.0)\n",
+ "Requirement already satisfied: fire in /usr/local/lib/python3.6/dist-packages (from keras2onnx->onnxmltools) (0.2.1)\n",
+ "Requirement already satisfied: requests in /usr/local/lib/python3.6/dist-packages (from keras2onnx->onnxmltools) (2.21.0)\n",
+ "Requirement already satisfied: scikit-learn>=0.19 in /usr/local/lib/python3.6/dist-packages (from skl2onnx->onnxmltools) (0.21.3)\n",
+ "Requirement already satisfied: termcolor in /usr/local/lib/python3.6/dist-packages (from fire->keras2onnx->onnxmltools) (1.1.0)\n",
+ "Requirement already satisfied: certifi>=2017.4.17 in /usr/local/lib/python3.6/dist-packages (from requests->keras2onnx->onnxmltools) (2019.9.11)\n",
+ "Requirement already satisfied: chardet<3.1.0,>=3.0.2 in /usr/local/lib/python3.6/dist-packages (from requests->keras2onnx->onnxmltools) (3.0.4)\n",
+ "Requirement already satisfied: idna<2.9,>=2.5 in /usr/local/lib/python3.6/dist-packages (from requests->keras2onnx->onnxmltools) (2.8)\n",
+ "Requirement already satisfied: urllib3<1.25,>=1.21.1 in /usr/local/lib/python3.6/dist-packages (from requests->keras2onnx->onnxmltools) (1.24.3)\n",
+ "Requirement already satisfied: joblib>=0.11 in /usr/local/lib/python3.6/dist-packages (from scikit-learn>=0.19->skl2onnx->onnxmltools) (0.14.0)\n",
+ "Requirement already satisfied: scipy>=0.17.0 in /usr/local/lib/python3.6/dist-packages (from scikit-learn>=0.19->skl2onnx->onnxmltools) (1.3.1)\n"
+ ],
+ "name": "stdout"
+ }
+ ]
+ },
+ {
+ "cell_type": "code",
+ "metadata": {
+ "id": "HfqmoxaJ1sau",
+ "colab_type": "code",
+ "outputId": "98e95191-d67c-4f3b-fcd0-fa0f1f374fba",
+ "colab": {
+ "base_uri": "https://localhost:8080/",
+ "height": 171
+ }
+ },
+ "source": [
+ "import onnxmltools\n",
+ "import coremltools"
+ ],
+ "execution_count": 0,
+ "outputs": [
+ {
+ "output_type": "display_data",
+ "data": {
+ "text/html": [
+ "<p style=\"color: red;\">\n",
+ "The default version of TensorFlow in Colab will soon switch to TensorFlow 2.x.<br>\n",
+ "We recommend you <a href=\"https://www.tensorflow.org/guide/migrate\" target=\"_blank\">upgrade</a> now \n",
+ "or ensure your notebook will continue to use TensorFlow 1.x via the <code>%tensorflow_version 1.x</code> magic:\n",
+ "<a href=\"https://colab.research.google.com/notebooks/tensorflow_version.ipynb\" target=\"_blank\">more info</a>.</p>\n"
+ ],
+ "text/plain": [
+ "<IPython.core.display.HTML object>"
+ ]
+ },
+ "metadata": {
+ "tags": []
+ }
+ },
+ {
+ "output_type": "stream",
+ "text": [
+ "WARNING:root:TensorFlow version 1.15.0 detected. Last version known to be fully compatible is 1.13.1 .\n",
+ "WARNING:root:Keras version 2.2.5 detected. Last version known to be fully compatible of Keras is 2.2.4 .\n"
+ ],
+ "name": "stderr"
+ }
+ ]
+ },
+ {
+ "cell_type": "code",
+ "metadata": {
+ "id": "rKX4J5Ig17w8",
+ "colab_type": "code",
+ "colab": {}
+ },
+ "source": [
+ "input_coreml_model = 'plasmodium-for-onnx.mlmodel'\n",
+ "output_onnx_model = 'model.onnx'"
+ ],
+ "execution_count": 0,
+ "outputs": []
+ },
+ {
+ "cell_type": "code",
+ "metadata": {
+ "id": "oOAjubc92BHt",
+ "colab_type": "code",
+ "colab": {}
+ },
+ "source": [
+ "coreml_model = coremltools.utils.load_spec(input_coreml_model)\n",
+ "onnx_model = onnxmltools.convert_coreml(coreml_model)\n",
+ "onnxmltools.utils.save_model(onnx_model, output_onnx_model)\n",
+ "\n",
+ "!cp ./model.onnx \"/content/gdrive/My Drive/.\""
+ ],
+ "execution_count": 0,
+ "outputs": []
+ }
+ ]
+} \ No newline at end of file
generated by cgit v1.2.3 (git 2.25.1) at 2024-11-24 12:22:50 +0000