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{
  "nbformat": 4,
  "nbformat_minor": 0,
  "metadata": {
    "colab": {
      "name": "ImageAI - Object Detection - Malaria.ipynb",
      "provenance": [],
      "collapsed_sections": [],
      "include_colab_link": true
    },
    "kernelspec": {
      "name": "python3",
      "display_name": "Python 3"
    },
    "accelerator": "GPU"
  },
  "cells": [
    {
      "cell_type": "markdown",
      "metadata": {
        "id": "view-in-github",
        "colab_type": "text"
      },
      "source": [
        "<a href=\"https://colab.research.google.com/github/navanchauhan/Malaria-Detection/blob/master/notebooks/ImageAI_Object_Detection_Malaria.ipynb\" target=\"_parent\"><img src=\"https://colab.research.google.com/assets/colab-badge.svg\" alt=\"Open In Colab\"/></a>"
      ]
    },
    {
      "cell_type": "markdown",
      "metadata": {
        "id": "2zOSN4i_lYIo",
        "colab_type": "text"
      },
      "source": [
        "# Malaria Detection using Object Detection Techinique (FastAI YOLOv3)"
      ]
    },
    {
      "cell_type": "markdown",
      "metadata": {
        "id": "9Y6vpGtJlhLB",
        "colab_type": "text"
      },
      "source": [
        "### Download the Dataset"
      ]
    },
    {
      "cell_type": "code",
      "metadata": {
        "id": "xXaLKSfZlGWS",
        "colab_type": "code",
        "outputId": "3911e5b9-8f0d-45a0-96c6-deee32e4cad6",
        "colab": {
          "base_uri": "https://localhost:8080/",
          "height": 1000
        }
      },
      "source": [
        "!wget http://air.ug/downloads/plasmodium-images.zip\n",
        "!unzip plasmodium-images.zip"
      ],
      "execution_count": 0,
      "outputs": [
        {
          "output_type": "stream",
          "text": [
            "--2019-10-29 08:38:31--  http://air.ug/downloads/plasmodium-images.zip\n",
            "Resolving air.ug (air.ug)... 34.242.164.142\n",
            "Connecting to air.ug (air.ug)|34.242.164.142|:80... connected.\n",
            "HTTP request sent, awaiting response... 200 OK\n",
            "Length: 148185339 (141M) [application/zip]\n",
            "Saving to: ‘plasmodium-images.zip’\n",
            "\n",
            "plasmodium-images.z 100%[===================>] 141.32M  10.4MB/s    in 17s     \n",
            "\n",
            "2019-10-29 08:38:48 (8.38 MB/s) - ‘plasmodium-images.zip’ saved [148185339/148185339]\n",
            "\n",
            "Archive:  plasmodium-images.zip\n",
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          ],
          "name": "stdout"
        }
      ]
    },
    {
      "cell_type": "markdown",
      "metadata": {
        "id": "pFU85Bujljov",
        "colab_type": "text"
      },
      "source": [
        "### Fix Annotations"
      ]
    },
    {
      "cell_type": "code",
      "metadata": {
        "id": "nJEpLerRlQPU",
        "colab_type": "code",
        "outputId": "33deb625-9560-4a3a-e4fa-a72ec1e302df",
        "colab": {
          "base_uri": "https://localhost:8080/",
          "height": 1000
        }
      },
      "source": [
        "import os\n",
        "from xml.etree import ElementTree as ET\n",
        "\n",
        "path = './annotation/'\n",
        "\n",
        "addSize = False\n",
        "replaceString = True\n",
        "addFileName = True\n",
        "\n",
        "def fixIt(XML_File):\n",
        "\ttree = ET.parse(XML_File)\n",
        "\troot = tree.getroot()\n",
        "\n",
        "\tsize = ET.Element(\"size\")\n",
        "\theight = ET.Element(\"height\")\n",
        "\twidth = ET.Element(\"width\")\n",
        "\n",
        "\theight.text = \"750\"\n",
        "\twidth.text = \"750\"\n",
        "\n",
        "\tsize.append(height)\n",
        "\tsize.append(width)\n",
        "\n",
        "\troot.insert(1,size)\n",
        "\n",
        "\ttree.write(XML_File)\n",
        "\n",
        "def addname(file, xml_file):\n",
        "\ttree = ET.parse(xml_file)\n",
        "\troot = tree.getroot()\n",
        "\n",
        "\tf = ET.Element(\"filename\")\n",
        "\n",
        "\tf.text = file\n",
        "\n",
        "\troot.insert(1, f)\n",
        "\n",
        "\ttree.write(xml_file)\n",
        "\n",
        "\n",
        "def replaceIt(filename, old, new):\n",
        "\tf = open(filename,'r')\n",
        "\tfiledata = f.read()\n",
        "\tf.close()\n",
        "\tnewdata = filedata.replace(old,new)\n",
        "\tf = open(filename,'w')\n",
        "\tf.write(newdata)\n",
        "\tf.close()\n",
        "\n",
        "\n",
        "\n",
        "for filename in os.listdir(path):\n",
        "\tif not filename.endswith('.xml'): continue\n",
        "\tfullname = os.path.join(path, filename)\n",
        "\tif addFileName:\n",
        "\t\timagename = filename.replace('xml','jpg')\n",
        "\t\taddname(imagename, fullname)\n",
        "\tif addSize:\n",
        "\t\tfixIt(fullname)\n",
        "\tif replaceString:\n",
        "\t\treplaceIt(fullname, \"person\", \"plasmodium\")\n",
        "\tprint(\"Fixed\", fullname)\n",
        "\n"
      ],
      "execution_count": 0,
      "outputs": [
        {
          "output_type": "stream",
          "text": [
            "Fixed ./annotation/plasmodium-1064.xml\n",
            "Fixed ./annotation/plasmodium-1248.xml\n",
            "Fixed ./annotation/plasmodium-0551.xml\n",
            "Fixed ./annotation/plasmodium-2616.xml\n",
            "Fixed ./annotation/plasmodium-1163.xml\n",
            "Fixed ./annotation/plasmodium-1551.xml\n",
            "Fixed ./annotation/plasmodium-0699.xml\n",
            "Fixed ./annotation/plasmodium-0276.xml\n",
            "Fixed ./annotation/plasmodium-2109.xml\n",
            "Fixed ./annotation/plasmodium-2667.xml\n",
            "Fixed ./annotation/plasmodium-1619.xml\n",
            "Fixed ./annotation/plasmodium-0892.xml\n",
            "Fixed ./annotation/plasmodium-2536.xml\n",
            "Fixed ./annotation/plasmodium-0037.xml\n",
            "Fixed ./annotation/plasmodium-1746.xml\n",
            "Fixed ./annotation/plasmodium-0238.xml\n",
            "Fixed ./annotation/plasmodium-0377.xml\n",
            "Fixed ./annotation/plasmodium-1928.xml\n",
            "Fixed ./annotation/plasmodium-1046.xml\n",
            "Fixed ./annotation/plasmodium-0790.xml\n",
            "Fixed ./annotation/plasmodium-1996.xml\n",
            "Fixed ./annotation/plasmodium-1301.xml\n",
            "Fixed ./annotation/plasmodium-1584.xml\n",
            "Fixed ./annotation/plasmodium-1999.xml\n",
            "Fixed ./annotation/plasmodium-0593.xml\n",
            "Fixed ./annotation/plasmodium-2541.xml\n",
            "Fixed ./annotation/plasmodium-1512.xml\n",
            "Fixed ./annotation/plasmodium-1610.xml\n",
            "Fixed ./annotation/plasmodium-1118.xml\n",
            "Fixed ./annotation/plasmodium-0149.xml\n",
            "Fixed ./annotation/plasmodium-2111.xml\n",
            "Fixed ./annotation/plasmodium-0441.xml\n",
            "Fixed ./annotation/plasmodium-0534.xml\n",
            "Fixed ./annotation/plasmodium-1877.xml\n",
            "Fixed ./annotation/plasmodium-0339.xml\n",
            "Fixed ./annotation/plasmodium-0973.xml\n",
            "Fixed ./annotation/plasmodium-2674.xml\n",
            "Fixed ./annotation/plasmodium-0745.xml\n",
            "Fixed ./annotation/plasmodium-0589.xml\n",
            "Fixed ./annotation/plasmodium-0030.xml\n",
            "Fixed ./annotation/plasmodium-0617.xml\n",
            "Fixed ./annotation/plasmodium-2300.xml\n",
            "Fixed ./annotation/plasmodium-0982.xml\n",
            "Fixed ./annotation/plasmodium-2657.xml\n",
            "Fixed ./annotation/plasmodium-1081.xml\n",
            "Fixed ./annotation/plasmodium-0914.xml\n",
            "Fixed ./annotation/plasmodium-2423.xml\n",
            "Fixed ./annotation/plasmodium-2192.xml\n",
            "Fixed ./annotation/plasmodium-0427.xml\n",
            "Fixed ./annotation/plasmodium-2360.xml\n",
            "Fixed ./annotation/plasmodium-0999.xml\n",
            "Fixed ./annotation/plasmodium-0814.xml\n",
            "Fixed ./annotation/plasmodium-0573.xml\n",
            "Fixed ./annotation/plasmodium-1893.xml\n",
            "Fixed ./annotation/plasmodium-2497.xml\n",
            "Fixed ./annotation/plasmodium-0762.xml\n",
            "Fixed ./annotation/plasmodium-1483.xml\n",
            "Fixed ./annotation/plasmodium-0053.xml\n",
            "Fixed ./annotation/plasmodium-2197.xml\n",
            "Fixed ./annotation/plasmodium-1728.xml\n",
            "Fixed ./annotation/plasmodium-2307.xml\n",
            "Fixed ./annotation/plasmodium-1067.xml\n",
            "Fixed ./annotation/plasmodium-1949.xml\n",
            "Fixed ./annotation/plasmodium-1549.xml\n",
            "Fixed ./annotation/plasmodium-0743.xml\n",
            "Fixed ./annotation/plasmodium-0212.xml\n",
            "Fixed ./annotation/plasmodium-2275.xml\n",
            "Fixed ./annotation/plasmodium-2308.xml\n",
            "Fixed ./annotation/plasmodium-2468.xml\n",
            "Fixed ./annotation/plasmodium-1898.xml\n",
            "Fixed ./annotation/plasmodium-0246.xml\n",
            "Fixed ./annotation/plasmodium-0521.xml\n",
            "Fixed ./annotation/plasmodium-2082.xml\n",
            "Fixed ./annotation/plasmodium-1822.xml\n",
            "Fixed ./annotation/plasmodium-1523.xml\n",
            "Fixed ./annotation/plasmodium-2567.xml\n",
            "Fixed ./annotation/plasmodium-2106.xml\n",
            "Fixed ./annotation/plasmodium-0857.xml\n",
            "Fixed ./annotation/plasmodium-2655.xml\n",
            "Fixed ./annotation/plasmodium-1223.xml\n",
            "Fixed ./annotation/plasmodium-1629.xml\n",
            "Fixed ./annotation/plasmodium-1666.xml\n",
            "Fixed ./annotation/plasmodium-0454.xml\n",
            "Fixed ./annotation/plasmodium-0041.xml\n",
            "Fixed ./annotation/plasmodium-0519.xml\n",
            "Fixed ./annotation/plasmodium-1432.xml\n",
            "Fixed ./annotation/plasmodium-0387.xml\n",
            "Fixed ./annotation/plasmodium-1912.xml\n",
            "Fixed ./annotation/plasmodium-1500.xml\n",
            "Fixed ./annotation/plasmodium-1057.xml\n",
            "Fixed ./annotation/plasmodium-0597.xml\n",
            "Fixed ./annotation/plasmodium-2191.xml\n",
            "Fixed ./annotation/plasmodium-2263.xml\n",
            "Fixed ./annotation/plasmodium-0292.xml\n",
            "Fixed ./annotation/plasmodium-0992.xml\n",
            "Fixed ./annotation/plasmodium-0288.xml\n",
            "Fixed ./annotation/plasmodium-1434.xml\n",
            "Fixed ./annotation/plasmodium-0038.xml\n",
            "Fixed ./annotation/plasmodium-0017.xml\n",
            "Fixed ./annotation/plasmodium-0031.xml\n",
            "Fixed ./annotation/plasmodium-0853.xml\n",
            "Fixed ./annotation/plasmodium-0763.xml\n",
            "Fixed ./annotation/plasmodium-0680.xml\n",
            "Fixed ./annotation/plasmodium-0200.xml\n",
            "Fixed ./annotation/plasmodium-2386.xml\n",
            "Fixed ./annotation/plasmodium-0217.xml\n",
            "Fixed ./annotation/plasmodium-2377.xml\n",
            "Fixed ./annotation/plasmodium-0206.xml\n",
            "Fixed ./annotation/plasmodium-0709.xml\n",
            "Fixed ./annotation/plasmodium-1385.xml\n",
            "Fixed ./annotation/plasmodium-1061.xml\n",
            "Fixed ./annotation/plasmodium-1238.xml\n",
            "Fixed ./annotation/plasmodium-1773.xml\n",
            "Fixed ./annotation/plasmodium-0682.xml\n",
            "Fixed ./annotation/plasmodium-1372.xml\n",
            "Fixed ./annotation/plasmodium-0253.xml\n",
            "Fixed ./annotation/plasmodium-0275.xml\n",
            "Fixed ./annotation/plasmodium-1667.xml\n",
            "Fixed ./annotation/plasmodium-1786.xml\n",
            "Fixed ./annotation/plasmodium-0809.xml\n",
            "Fixed ./annotation/plasmodium-0612.xml\n",
            "Fixed ./annotation/plasmodium-1650.xml\n",
            "Fixed ./annotation/plasmodium-1304.xml\n",
            "Fixed ./annotation/plasmodium-0866.xml\n",
            "Fixed ./annotation/plasmodium-1049.xml\n",
            "Fixed ./annotation/plasmodium-0436.xml\n",
            "Fixed ./annotation/plasmodium-1649.xml\n",
            "Fixed ./annotation/plasmodium-2566.xml\n",
            "Fixed ./annotation/plasmodium-2376.xml\n",
            "Fixed ./annotation/plasmodium-0610.xml\n",
            "Fixed ./annotation/plasmodium-0415.xml\n",
            "Fixed ./annotation/plasmodium-1299.xml\n",
            "Fixed ./annotation/plasmodium-2483.xml\n",
            "Fixed ./annotation/plasmodium-2323.xml\n",
            "Fixed ./annotation/plasmodium-2432.xml\n",
            "Fixed ./annotation/plasmodium-2650.xml\n",
            "Fixed ./annotation/plasmodium-1062.xml\n",
            "Fixed ./annotation/plasmodium-0890.xml\n",
            "Fixed ./annotation/plasmodium-2212.xml\n",
            "Fixed ./annotation/plasmodium-0325.xml\n",
            "Fixed ./annotation/plasmodium-2177.xml\n",
            "Fixed ./annotation/plasmodium-1848.xml\n",
            "Fixed ./annotation/plasmodium-0843.xml\n",
            "Fixed ./annotation/plasmodium-1244.xml\n",
            "Fixed ./annotation/plasmodium-0775.xml\n",
            "Fixed ./annotation/plasmodium-0738.xml\n",
            "Fixed ./annotation/plasmodium-1841.xml\n",
            "Fixed ./annotation/plasmodium-0780.xml\n",
            "Fixed ./annotation/plasmodium-2101.xml\n",
            "Fixed ./annotation/plasmodium-2479.xml\n",
            "Fixed ./annotation/plasmodium-1817.xml\n",
            "Fixed ./annotation/plasmodium-1350.xml\n",
            "Fixed ./annotation/plasmodium-1279.xml\n",
            "Fixed ./annotation/plasmodium-0450.xml\n",
            "Fixed ./annotation/plasmodium-0653.xml\n",
            "Fixed ./annotation/plasmodium-1413.xml\n",
            "Fixed ./annotation/plasmodium-1622.xml\n",
            "Fixed ./annotation/plasmodium-0097.xml\n",
            "Fixed ./annotation/plasmodium-0431.xml\n",
            "Fixed ./annotation/plasmodium-1277.xml\n",
            "Fixed ./annotation/plasmodium-1110.xml\n",
            "Fixed ./annotation/plasmodium-0310.xml\n",
            "Fixed ./annotation/plasmodium-1222.xml\n",
            "Fixed ./annotation/plasmodium-0278.xml\n",
            "Fixed ./annotation/plasmodium-2385.xml\n",
            "Fixed ./annotation/plasmodium-2347.xml\n",
            "Fixed ./annotation/plasmodium-1430.xml\n",
            "Fixed ./annotation/plasmodium-1661.xml\n",
            "Fixed ./annotation/plasmodium-1600.xml\n",
            "Fixed ./annotation/plasmodium-1821.xml\n",
            "Fixed ./annotation/plasmodium-1132.xml\n",
            "Fixed ./annotation/plasmodium-0783.xml\n",
            "Fixed ./annotation/plasmodium-0565.xml\n",
            "Fixed ./annotation/plasmodium-2118.xml\n",
            "Fixed ./annotation/plasmodium-1505.xml\n",
            "Fixed ./annotation/plasmodium-2564.xml\n",
            "Fixed ./annotation/plasmodium-2003.xml\n",
            "Fixed ./annotation/plasmodium-0394.xml\n",
            "Fixed ./annotation/plasmodium-0428.xml\n",
            "Fixed ./annotation/plasmodium-1048.xml\n",
            "Fixed ./annotation/plasmodium-2573.xml\n",
            "Fixed ./annotation/plasmodium-2487.xml\n",
            "Fixed ./annotation/plasmodium-1492.xml\n",
            "Fixed ./annotation/plasmodium-1341.xml\n",
            "Fixed ./annotation/plasmodium-2278.xml\n",
            "Fixed ./annotation/plasmodium-1636.xml\n",
            "Fixed ./annotation/plasmodium-0061.xml\n",
            "Fixed ./annotation/plasmodium-0563.xml\n",
            "Fixed ./annotation/plasmodium-0079.xml\n",
            "Fixed ./annotation/plasmodium-0559.xml\n",
            "Fixed ./annotation/plasmodium-2357.xml\n",
            "Fixed ./annotation/plasmodium-2671.xml\n",
            "Fixed ./annotation/plasmodium-1853.xml\n",
            "Fixed ./annotation/plasmodium-1566.xml\n",
            "Fixed ./annotation/plasmodium-2044.xml\n",
            "Fixed ./annotation/plasmodium-1457.xml\n",
            "Fixed ./annotation/plasmodium-1147.xml\n",
            "Fixed ./annotation/plasmodium-2324.xml\n",
            "Fixed ./annotation/plasmodium-1173.xml\n",
            "Fixed ./annotation/plasmodium-1501.xml\n",
            "Fixed ./annotation/plasmodium-1445.xml\n",
            "Fixed ./annotation/plasmodium-1593.xml\n",
            "Fixed ./annotation/plasmodium-0482.xml\n",
            "Fixed ./annotation/plasmodium-0209.xml\n",
            "Fixed ./annotation/plasmodium-1863.xml\n",
            "Fixed ./annotation/plasmodium-1942.xml\n",
            "Fixed ./annotation/plasmodium-1691.xml\n",
            "Fixed ./annotation/plasmodium-2594.xml\n",
            "Fixed ./annotation/plasmodium-2110.xml\n",
            "Fixed ./annotation/plasmodium-0956.xml\n",
            "Fixed ./annotation/plasmodium-1943.xml\n",
            "Fixed ./annotation/plasmodium-0920.xml\n",
            "Fixed ./annotation/plasmodium-1690.xml\n",
            "Fixed ./annotation/plasmodium-0335.xml\n",
            "Fixed ./annotation/plasmodium-0364.xml\n",
            "Fixed ./annotation/plasmodium-0654.xml\n",
            "Fixed ./annotation/plasmodium-1196.xml\n",
            "Fixed ./annotation/plasmodium-2290.xml\n",
            "Fixed ./annotation/plasmodium-2114.xml\n",
            "Fixed ./annotation/plasmodium-2036.xml\n",
            "Fixed ./annotation/plasmodium-1737.xml\n",
            "Fixed ./annotation/plasmodium-0503.xml\n",
            "Fixed ./annotation/plasmodium-0283.xml\n",
            "Fixed ./annotation/plasmodium-1133.xml\n",
            "Fixed ./annotation/plasmodium-1296.xml\n",
            "Fixed ./annotation/plasmodium-1302.xml\n",
            "Fixed ./annotation/plasmodium-1288.xml\n",
            "Fixed ./annotation/plasmodium-2591.xml\n",
            "Fixed ./annotation/plasmodium-0294.xml\n",
            "Fixed ./annotation/plasmodium-0153.xml\n",
            "Fixed ./annotation/plasmodium-0859.xml\n",
            "Fixed ./annotation/plasmodium-2203.xml\n",
            "Fixed ./annotation/plasmodium-1730.xml\n",
            "Fixed ./annotation/plasmodium-0265.xml\n",
            "Fixed ./annotation/plasmodium-0478.xml\n",
            "Fixed ./annotation/plasmodium-0655.xml\n",
            "Fixed ./annotation/plasmodium-1528.xml\n",
            "Fixed ./annotation/plasmodium-0378.xml\n",
            "Fixed ./annotation/plasmodium-1126.xml\n",
            "Fixed ./annotation/plasmodium-0289.xml\n",
            "Fixed ./annotation/plasmodium-0251.xml\n",
            "Fixed ./annotation/plasmodium-1520.xml\n",
            "Fixed ./annotation/plasmodium-1493.xml\n",
            "Fixed ./annotation/plasmodium-0125.xml\n",
            "Fixed ./annotation/plasmodium-0657.xml\n",
            "Fixed ./annotation/plasmodium-2434.xml\n",
            "Fixed ./annotation/plasmodium-0726.xml\n",
            "Fixed ./annotation/plasmodium-1745.xml\n",
            "Fixed ./annotation/plasmodium-0634.xml\n",
            "Fixed ./annotation/plasmodium-1182.xml\n",
            "Fixed ./annotation/plasmodium-1019.xml\n",
            "Fixed ./annotation/plasmodium-1377.xml\n",
            "Fixed ./annotation/plasmodium-2277.xml\n",
            "Fixed ./annotation/plasmodium-2467.xml\n",
            "Fixed ./annotation/plasmodium-2176.xml\n",
            "Fixed ./annotation/plasmodium-0759.xml\n",
            "Fixed ./annotation/plasmodium-0136.xml\n",
            "Fixed ./annotation/plasmodium-2595.xml\n",
            "Fixed ./annotation/plasmodium-1499.xml\n",
            "Fixed ./annotation/plasmodium-1425.xml\n",
            "Fixed ./annotation/plasmodium-0700.xml\n",
            "Fixed ./annotation/plasmodium-2119.xml\n",
            "Fixed ./annotation/plasmodium-0357.xml\n",
            "Fixed ./annotation/plasmodium-0652.xml\n",
            "Fixed ./annotation/plasmodium-2073.xml\n",
            "Fixed ./annotation/plasmodium-0871.xml\n",
            "Fixed ./annotation/plasmodium-1054.xml\n",
            "Fixed ./annotation/plasmodium-0748.xml\n",
            "Fixed ./annotation/plasmodium-1329.xml\n",
            "Fixed ./annotation/plasmodium-1865.xml\n",
            "Fixed ./annotation/plasmodium-1232.xml\n",
            "Fixed ./annotation/plasmodium-0796.xml\n",
            "Fixed ./annotation/plasmodium-0687.xml\n",
            "Fixed ./annotation/plasmodium-0332.xml\n",
            "Fixed ./annotation/plasmodium-1395.xml\n",
            "Fixed ./annotation/plasmodium-1990.xml\n",
            "Fixed ./annotation/plasmodium-1860.xml\n",
            "Fixed ./annotation/plasmodium-0623.xml\n",
            "Fixed ./annotation/plasmodium-0455.xml\n",
            "Fixed ./annotation/plasmodium-0078.xml\n",
            "Fixed ./annotation/plasmodium-0558.xml\n",
            "Fixed ./annotation/plasmodium-0864.xml\n",
            "Fixed ./annotation/plasmodium-2626.xml\n",
            "Fixed ./annotation/plasmodium-1401.xml\n",
            "Fixed ./annotation/plasmodium-1577.xml\n",
            "Fixed ./annotation/plasmodium-2426.xml\n",
            "Fixed ./annotation/plasmodium-2656.xml\n",
            "Fixed ./annotation/plasmodium-1094.xml\n",
            "Fixed ./annotation/plasmodium-1360.xml\n",
            "Fixed ./annotation/plasmodium-1086.xml\n",
            "Fixed ./annotation/plasmodium-1882.xml\n",
            "Fixed ./annotation/plasmodium-1286.xml\n",
            "Fixed ./annotation/plasmodium-0098.xml\n",
            "Fixed ./annotation/plasmodium-0083.xml\n",
            "Fixed ./annotation/plasmodium-1553.xml\n",
            "Fixed ./annotation/plasmodium-1791.xml\n",
            "Fixed ./annotation/plasmodium-0308.xml\n",
            "Fixed ./annotation/plasmodium-1266.xml\n",
            "Fixed ./annotation/plasmodium-0835.xml\n",
            "Fixed ./annotation/plasmodium-1488.xml\n",
            "Fixed ./annotation/plasmodium-0299.xml\n",
            "Fixed ./annotation/plasmodium-1749.xml\n",
            "Fixed ./annotation/plasmodium-0811.xml\n",
            "Fixed ./annotation/plasmodium-1653.xml\n",
            "Fixed ./annotation/plasmodium-2363.xml\n",
            "Fixed ./annotation/plasmodium-1531.xml\n",
            "Fixed ./annotation/plasmodium-2543.xml\n",
            "Fixed ./annotation/plasmodium-1576.xml\n",
            "Fixed ./annotation/plasmodium-2576.xml\n",
            "Fixed ./annotation/plasmodium-2313.xml\n",
            "Fixed ./annotation/plasmodium-0675.xml\n",
            "Fixed ./annotation/plasmodium-0940.xml\n",
            "Fixed ./annotation/plasmodium-2066.xml\n",
            "Fixed ./annotation/plasmodium-1042.xml\n",
            "Fixed ./annotation/plasmodium-2195.xml\n",
            "Fixed ./annotation/plasmodium-0353.xml\n",
            "Fixed ./annotation/plasmodium-2608.xml\n",
            "Fixed ./annotation/plasmodium-2525.xml\n",
            "Fixed ./annotation/plasmodium-1529.xml\n",
            "Fixed ./annotation/plasmodium-0941.xml\n",
            "Fixed ./annotation/plasmodium-1698.xml\n",
            "Fixed ./annotation/plasmodium-1654.xml\n",
            "Fixed ./annotation/plasmodium-1216.xml\n",
            "Fixed ./annotation/plasmodium-2050.xml\n",
            "Fixed ./annotation/plasmodium-2303.xml\n",
            "Fixed ./annotation/plasmodium-0554.xml\n",
            "Fixed ./annotation/plasmodium-0868.xml\n",
            "Fixed ./annotation/plasmodium-1039.xml\n",
            "Fixed ./annotation/plasmodium-2143.xml\n",
            "Fixed ./annotation/plasmodium-2055.xml\n",
            "Fixed ./annotation/plasmodium-0422.xml\n",
            "Fixed ./annotation/plasmodium-0913.xml\n",
            "Fixed ./annotation/plasmodium-0620.xml\n",
            "Fixed ./annotation/plasmodium-2387.xml\n",
            "Fixed ./annotation/plasmodium-0416.xml\n",
            "Fixed ./annotation/plasmodium-1343.xml\n",
            "Fixed ./annotation/plasmodium-0350.xml\n",
            "Fixed ./annotation/plasmodium-2452.xml\n",
            "Fixed ./annotation/plasmodium-1121.xml\n",
            "Fixed ./annotation/plasmodium-0511.xml\n",
            "Fixed ./annotation/plasmodium-1932.xml\n",
            "Fixed ./annotation/plasmodium-1692.xml\n",
            "Fixed ./annotation/plasmodium-2504.xml\n",
            "Fixed ./annotation/plasmodium-2582.xml\n",
            "Fixed ./annotation/plasmodium-2425.xml\n",
            "Fixed ./annotation/plasmodium-2058.xml\n",
            "Fixed ./annotation/plasmodium-0886.xml\n",
            "Fixed ./annotation/plasmodium-0464.xml\n",
            "Fixed ./annotation/plasmodium-1955.xml\n",
            "Fixed ./annotation/plasmodium-0018.xml\n",
            "Fixed ./annotation/plasmodium-0599.xml\n",
            "Fixed ./annotation/plasmodium-1995.xml\n",
            "Fixed ./annotation/plasmodium-0630.xml\n",
            "Fixed ./annotation/plasmodium-2402.xml\n",
            "Fixed ./annotation/plasmodium-2456.xml\n",
            "Fixed ./annotation/plasmodium-0449.xml\n",
            "Fixed ./annotation/plasmodium-2538.xml\n",
            "Fixed ./annotation/plasmodium-0906.xml\n",
            "Fixed ./annotation/plasmodium-1145.xml\n",
            "Fixed ./annotation/plasmodium-2166.xml\n",
            "Fixed ./annotation/plasmodium-0087.xml\n",
            "Fixed ./annotation/plasmodium-0997.xml\n",
            "Fixed ./annotation/plasmodium-2401.xml\n",
            "Fixed ./annotation/plasmodium-0877.xml\n",
            "Fixed ./annotation/plasmodium-1937.xml\n",
            "Fixed ./annotation/plasmodium-0505.xml\n",
            "Fixed ./annotation/plasmodium-2282.xml\n",
            "Fixed ./annotation/plasmodium-1804.xml\n",
            "Fixed ./annotation/plasmodium-0664.xml\n",
            "Fixed ./annotation/plasmodium-1652.xml\n",
            "Fixed ./annotation/plasmodium-0336.xml\n",
            "Fixed ./annotation/plasmodium-2489.xml\n",
            "Fixed ./annotation/plasmodium-1986.xml\n",
            "Fixed ./annotation/plasmodium-2091.xml\n",
            "Fixed ./annotation/plasmodium-2562.xml\n",
            "Fixed ./annotation/plasmodium-2140.xml\n",
            "Fixed ./annotation/plasmodium-1214.xml\n",
            "Fixed ./annotation/plasmodium-1564.xml\n",
            "Fixed ./annotation/plasmodium-0240.xml\n",
            "Fixed ./annotation/plasmodium-2405.xml\n",
            "Fixed ./annotation/plasmodium-0720.xml\n",
            "Fixed ./annotation/plasmodium-1966.xml\n",
            "Fixed ./annotation/plasmodium-2079.xml\n",
            "Fixed ./annotation/plasmodium-0407.xml\n",
            "Fixed ./annotation/plasmodium-2035.xml\n",
            "Fixed ./annotation/plasmodium-2330.xml\n",
            "Fixed ./annotation/plasmodium-0256.xml\n",
            "Fixed ./annotation/plasmodium-1713.xml\n",
            "Fixed ./annotation/plasmodium-0584.xml\n",
            "Fixed ./annotation/plasmodium-1284.xml\n",
            "Fixed ./annotation/plasmodium-0048.xml\n",
            "Fixed ./annotation/plasmodium-0380.xml\n",
            "Fixed ./annotation/plasmodium-1099.xml\n",
            "Fixed ./annotation/plasmodium-1639.xml\n",
            "Fixed ./annotation/plasmodium-1293.xml\n",
            "Fixed ./annotation/plasmodium-0374.xml\n",
            "Fixed ./annotation/plasmodium-1513.xml\n",
            "Fixed ./annotation/plasmodium-0562.xml\n",
            "Fixed ./annotation/plasmodium-1168.xml\n",
            "Fixed ./annotation/plasmodium-1271.xml\n",
            "Fixed ./annotation/plasmodium-2537.xml\n",
            "Fixed ./annotation/plasmodium-2437.xml\n",
            "Fixed ./annotation/plasmodium-1160.xml\n",
            "Fixed ./annotation/plasmodium-0897.xml\n",
            "Fixed ./annotation/plasmodium-0628.xml\n",
            "Fixed ./annotation/plasmodium-1555.xml\n",
            "Fixed ./annotation/plasmodium-0144.xml\n",
            "Fixed ./annotation/plasmodium-2544.xml\n",
            "Fixed ./annotation/plasmodium-1367.xml\n",
            "Fixed ./annotation/plasmodium-0177.xml\n",
            "Fixed ./annotation/plasmodium-0226.xml\n",
            "Fixed ./annotation/plasmodium-0005.xml\n",
            "Fixed ./annotation/plasmodium-1777.xml\n",
            "Fixed ./annotation/plasmodium-0020.xml\n",
            "Fixed ./annotation/plasmodium-1637.xml\n",
            "Fixed ./annotation/plasmodium-0580.xml\n",
            "Fixed ./annotation/plasmodium-0742.xml\n",
            "Fixed ./annotation/plasmodium-1264.xml\n",
            "Fixed ./annotation/plasmodium-0911.xml\n",
            "Fixed ./annotation/plasmodium-2593.xml\n",
            "Fixed ./annotation/plasmodium-1424.xml\n",
            "Fixed ./annotation/plasmodium-0137.xml\n",
            "Fixed ./annotation/plasmodium-1414.xml\n",
            "Fixed ./annotation/plasmodium-2052.xml\n",
            "Fixed ./annotation/plasmodium-1754.xml\n",
            "Fixed ./annotation/plasmodium-0500.xml\n",
            "Fixed ./annotation/plasmodium-0848.xml\n",
            "Fixed ./annotation/plasmodium-2317.xml\n",
            "Fixed ./annotation/plasmodium-0677.xml\n",
            "Fixed ./annotation/plasmodium-1663.xml\n",
            "Fixed ./annotation/plasmodium-1511.xml\n",
            "Fixed ./annotation/plasmodium-0397.xml\n",
            "Fixed ./annotation/plasmodium-0126.xml\n",
            "Fixed ./annotation/plasmodium-0691.xml\n",
            "Fixed ./annotation/plasmodium-0268.xml\n",
            "Fixed ./annotation/plasmodium-1613.xml\n",
            "Fixed ./annotation/plasmodium-0191.xml\n",
            "Fixed ./annotation/plasmodium-1112.xml\n",
            "Fixed ./annotation/plasmodium-0764.xml\n",
            "Fixed ./annotation/plasmodium-1715.xml\n",
            "Fixed ./annotation/plasmodium-2320.xml\n",
            "Fixed ./annotation/plasmodium-1542.xml\n",
            "Fixed ./annotation/plasmodium-1953.xml\n",
            "Fixed ./annotation/plasmodium-2075.xml\n",
            "Fixed ./annotation/plasmodium-1824.xml\n",
            "Fixed ./annotation/plasmodium-1852.xml\n",
            "Fixed ./annotation/plasmodium-1915.xml\n",
            "Fixed ./annotation/plasmodium-1043.xml\n",
            "Fixed ./annotation/plasmodium-2575.xml\n",
            "Fixed ./annotation/plasmodium-0537.xml\n",
            "Fixed ./annotation/plasmodium-2642.xml\n",
            "Fixed ./annotation/plasmodium-2391.xml\n",
            "Fixed ./annotation/plasmodium-0499.xml\n",
            "Fixed ./annotation/plasmodium-2293.xml\n",
            "Fixed ./annotation/plasmodium-0540.xml\n",
            "Fixed ./annotation/plasmodium-1516.xml\n",
            "Fixed ./annotation/plasmodium-2527.xml\n",
            "Fixed ./annotation/plasmodium-2099.xml\n",
            "Fixed ./annotation/plasmodium-0367.xml\n",
            "Fixed ./annotation/plasmodium-1471.xml\n",
            "Fixed ./annotation/plasmodium-2128.xml\n",
            "Fixed ./annotation/plasmodium-0344.xml\n",
            "Fixed ./annotation/plasmodium-1166.xml\n",
            "Fixed ./annotation/plasmodium-0583.xml\n",
            "Fixed ./annotation/plasmodium-0715.xml\n",
            "Fixed ./annotation/plasmodium-0202.xml\n",
            "Fixed ./annotation/plasmodium-0841.xml\n",
            "Fixed ./annotation/plasmodium-1318.xml\n",
            "Fixed ./annotation/plasmodium-2245.xml\n",
            "Fixed ./annotation/plasmodium-2299.xml\n",
            "Fixed ./annotation/plasmodium-0987.xml\n",
            "Fixed ./annotation/plasmodium-2184.xml\n",
            "Fixed ./annotation/plasmodium-1885.xml\n",
            "Fixed ./annotation/plasmodium-0838.xml\n",
            "Fixed ./annotation/plasmodium-1685.xml\n",
            "Fixed ./annotation/plasmodium-0281.xml\n",
            "Fixed ./annotation/plasmodium-1998.xml\n",
            "Fixed ./annotation/plasmodium-1267.xml\n",
            "Fixed ./annotation/plasmodium-1030.xml\n",
            "Fixed ./annotation/plasmodium-1896.xml\n",
            "Fixed ./annotation/plasmodium-0631.xml\n",
            "Fixed ./annotation/plasmodium-1213.xml\n",
            "Fixed ./annotation/plasmodium-0314.xml\n",
            "Fixed ./annotation/plasmodium-1748.xml\n",
            "Fixed ./annotation/plasmodium-2210.xml\n",
            "Fixed ./annotation/plasmodium-0545.xml\n",
            "Fixed ./annotation/plasmodium-0784.xml\n",
            "Fixed ./annotation/plasmodium-1703.xml\n",
            "Fixed ./annotation/plasmodium-0108.xml\n",
            "Fixed ./annotation/plasmodium-0903.xml\n",
            "Fixed ./annotation/plasmodium-2550.xml\n",
            "Fixed ./annotation/plasmodium-0355.xml\n",
            "Fixed ./annotation/plasmodium-1408.xml\n",
            "Fixed ./annotation/plasmodium-1571.xml\n",
            "Fixed ./annotation/plasmodium-2080.xml\n",
            "Fixed ./annotation/plasmodium-0228.xml\n",
            "Fixed ./annotation/plasmodium-2129.xml\n",
            "Fixed ./annotation/plasmodium-2542.xml\n",
            "Fixed ./annotation/plasmodium-1605.xml\n",
            "Fixed ./annotation/plasmodium-1922.xml\n",
            "Fixed ./annotation/plasmodium-2059.xml\n",
            "Fixed ./annotation/plasmodium-1811.xml\n",
            "Fixed ./annotation/plasmodium-1889.xml\n",
            "Fixed ./annotation/plasmodium-2335.xml\n",
            "Fixed ./annotation/plasmodium-2329.xml\n",
            "Fixed ./annotation/plasmodium-1363.xml\n",
            "Fixed ./annotation/plasmodium-1383.xml\n",
            "Fixed ./annotation/plasmodium-1258.xml\n",
            "Fixed ./annotation/plasmodium-1178.xml\n",
            "Fixed ./annotation/plasmodium-1646.xml\n",
            "Fixed ./annotation/plasmodium-0470.xml\n",
            "Fixed ./annotation/plasmodium-1162.xml\n",
            "Fixed ./annotation/plasmodium-0833.xml\n",
            "Fixed ./annotation/plasmodium-2198.xml\n",
            "Fixed ./annotation/plasmodium-0736.xml\n",
            "Fixed ./annotation/plasmodium-2612.xml\n",
            "Fixed ./annotation/plasmodium-1536.xml\n",
            "Fixed ./annotation/plasmodium-0313.xml\n",
            "Fixed ./annotation/plasmodium-1697.xml\n",
            "Fixed ./annotation/plasmodium-0934.xml\n",
            "Fixed ./annotation/plasmodium-1718.xml\n",
            "Fixed ./annotation/plasmodium-0717.xml\n",
            "Fixed ./annotation/plasmodium-1974.xml\n",
            "Fixed ./annotation/plasmodium-0474.xml\n",
            "Fixed ./annotation/plasmodium-2028.xml\n",
            "Fixed ./annotation/plasmodium-0596.xml\n",
            "Fixed ./annotation/plasmodium-0319.xml\n",
            "Fixed ./annotation/plasmodium-0947.xml\n",
            "Fixed ./annotation/plasmodium-0794.xml\n",
            "Fixed ./annotation/plasmodium-0576.xml\n",
            "Fixed ./annotation/plasmodium-0850.xml\n",
            "Fixed ./annotation/plasmodium-1186.xml\n",
            "Fixed ./annotation/plasmodium-2235.xml\n",
            "Fixed ./annotation/plasmodium-0797.xml\n",
            "Fixed ./annotation/plasmodium-0959.xml\n",
            "Fixed ./annotation/plasmodium-2213.xml\n",
            "Fixed ./annotation/plasmodium-2627.xml\n",
            "Fixed ./annotation/plasmodium-1539.xml\n",
            "Fixed ./annotation/plasmodium-0998.xml\n",
            "Fixed ./annotation/plasmodium-0204.xml\n",
            "Fixed ./annotation/plasmodium-0058.xml\n",
            "Fixed ./annotation/plasmodium-0239.xml\n",
            "Fixed ./annotation/plasmodium-2291.xml\n",
            "Fixed ./annotation/plasmodium-0231.xml\n",
            "Fixed ./annotation/plasmodium-2149.xml\n",
            "Fixed ./annotation/plasmodium-1240.xml\n",
            "Fixed ./annotation/plasmodium-2412.xml\n",
            "Fixed ./annotation/plasmodium-2532.xml\n",
            "Fixed ./annotation/plasmodium-2390.xml\n",
            "Fixed ./annotation/plasmodium-1864.xml\n",
            "Fixed ./annotation/plasmodium-0102.xml\n",
            "Fixed ./annotation/plasmodium-0931.xml\n",
            "Fixed ./annotation/plasmodium-1203.xml\n",
            "Fixed ./annotation/plasmodium-1262.xml\n",
            "Fixed ./annotation/plasmodium-0614.xml\n",
            "Fixed ./annotation/plasmodium-1701.xml\n",
            "Fixed ./annotation/plasmodium-1866.xml\n",
            "Fixed ./annotation/plasmodium-2672.xml\n",
            "Fixed ./annotation/plasmodium-2380.xml\n",
            "Fixed ./annotation/plasmodium-2459.xml\n",
            "Fixed ./annotation/plasmodium-2158.xml\n",
            "Fixed ./annotation/plasmodium-0802.xml\n",
            "Fixed ./annotation/plasmodium-1124.xml\n",
            "Fixed ./annotation/plasmodium-1453.xml\n",
            "Fixed ./annotation/plasmodium-1828.xml\n",
            "Fixed ./annotation/plasmodium-1324.xml\n",
            "Fixed ./annotation/plasmodium-1353.xml\n",
            "Fixed ./annotation/plasmodium-0054.xml\n",
            "Fixed ./annotation/plasmodium-1956.xml\n",
            "Fixed ./annotation/plasmodium-2062.xml\n",
            "Fixed ./annotation/plasmodium-2499.xml\n",
            "Fixed ./annotation/plasmodium-1578.xml\n",
            "Fixed ./annotation/plasmodium-2547.xml\n",
            "Fixed ./annotation/plasmodium-1167.xml\n",
            "Fixed ./annotation/plasmodium-1527.xml\n",
            "Fixed ./annotation/plasmodium-2207.xml\n",
            "Fixed ./annotation/plasmodium-1361.xml\n",
            "Fixed ./annotation/plasmodium-2607.xml\n",
            "Fixed ./annotation/plasmodium-0957.xml\n",
            "Fixed ./annotation/plasmodium-2685.xml\n",
            "Fixed ./annotation/plasmodium-0287.xml\n",
            "Fixed ./annotation/plasmodium-1589.xml\n",
            "Fixed ./annotation/plasmodium-1931.xml\n",
            "Fixed ./annotation/plasmodium-0426.xml\n",
            "Fixed ./annotation/plasmodium-0493.xml\n",
            "Fixed ./annotation/plasmodium-1648.xml\n",
            "Fixed ./annotation/plasmodium-0766.xml\n",
            "Fixed ./annotation/plasmodium-1257.xml\n",
            "Fixed ./annotation/plasmodium-1330.xml\n",
            "Fixed ./annotation/plasmodium-0787.xml\n",
            "Fixed ./annotation/plasmodium-2640.xml\n",
            "Fixed ./annotation/plasmodium-1609.xml\n",
            "Fixed ./annotation/plasmodium-2378.xml\n",
            "Fixed ./annotation/plasmodium-0769.xml\n",
            "Fixed ./annotation/plasmodium-2510.xml\n",
            "Fixed ./annotation/plasmodium-0347.xml\n",
            "Fixed ./annotation/plasmodium-2676.xml\n",
            "Fixed ./annotation/plasmodium-0627.xml\n",
            "Fixed ./annotation/plasmodium-0012.xml\n",
            "Fixed ./annotation/plasmodium-0788.xml\n",
            "Fixed ./annotation/plasmodium-0216.xml\n",
            "Fixed ./annotation/plasmodium-1819.xml\n",
            "Fixed ./annotation/plasmodium-1849.xml\n",
            "Fixed ./annotation/plasmodium-1497.xml\n",
            "Fixed ./annotation/plasmodium-1278.xml\n",
            "Fixed ./annotation/plasmodium-1386.xml\n",
            "Fixed ./annotation/plasmodium-0333.xml\n",
            "Fixed ./annotation/plasmodium-2359.xml\n",
            "Fixed ./annotation/plasmodium-0732.xml\n",
            "Fixed ./annotation/plasmodium-1910.xml\n",
            "Fixed ./annotation/plasmodium-1707.xml\n",
            "Fixed ./annotation/plasmodium-2150.xml\n",
            "Fixed ./annotation/plasmodium-1678.xml\n",
            "Fixed ./annotation/plasmodium-2116.xml\n",
            "Fixed ./annotation/plasmodium-2283.xml\n",
            "Fixed ./annotation/plasmodium-1802.xml\n",
            "Fixed ./annotation/plasmodium-0134.xml\n",
            "Fixed ./annotation/plasmodium-1229.xml\n",
            "Fixed ./annotation/plasmodium-2205.xml\n",
            "Fixed ./annotation/plasmodium-0055.xml\n",
            "Fixed ./annotation/plasmodium-0943.xml\n",
            "Fixed ./annotation/plasmodium-0208.xml\n",
            "Fixed ./annotation/plasmodium-1419.xml\n",
            "Fixed ./annotation/plasmodium-1665.xml\n",
            "Fixed ./annotation/plasmodium-1630.xml\n",
            "Fixed ./annotation/plasmodium-2257.xml\n",
            "Fixed ./annotation/plasmodium-1959.xml\n",
            "Fixed ./annotation/plasmodium-1127.xml\n",
            "Fixed ./annotation/plasmodium-1287.xml\n",
            "Fixed ./annotation/plasmodium-1076.xml\n",
            "Fixed ./annotation/plasmodium-2354.xml\n",
            "Fixed ./annotation/plasmodium-0672.xml\n",
            "Fixed ./annotation/plasmodium-0633.xml\n",
            "Fixed ./annotation/plasmodium-0297.xml\n",
            "Fixed ./annotation/plasmodium-2598.xml\n",
            "Fixed ./annotation/plasmodium-1303.xml\n",
            "Fixed ./annotation/plasmodium-2622.xml\n",
            "Fixed ./annotation/plasmodium-0588.xml\n",
            "Fixed ./annotation/plasmodium-0320.xml\n",
            "Fixed ./annotation/plasmodium-2305.xml\n",
            "Fixed ./annotation/plasmodium-0821.xml\n",
            "Fixed ./annotation/plasmodium-1462.xml\n",
            "Fixed ./annotation/plasmodium-2349.xml\n",
            "Fixed ./annotation/plasmodium-2202.xml\n",
            "Fixed ./annotation/plasmodium-2678.xml\n",
            "Fixed ./annotation/plasmodium-0305.xml\n",
            "Fixed ./annotation/plasmodium-2304.xml\n",
            "Fixed ./annotation/plasmodium-0260.xml\n",
            "Fixed ./annotation/plasmodium-2215.xml\n",
            "Fixed ./annotation/plasmodium-1337.xml\n",
            "Fixed ./annotation/plasmodium-0044.xml\n",
            "Fixed ./annotation/plasmodium-1739.xml\n",
            "Fixed ./annotation/plasmodium-2690.xml\n",
            "Fixed ./annotation/plasmodium-0923.xml\n",
            "Fixed ./annotation/plasmodium-2115.xml\n",
            "Fixed ./annotation/plasmodium-1733.xml\n",
            "Fixed ./annotation/plasmodium-2603.xml\n",
            "Fixed ./annotation/plasmodium-2186.xml\n",
            "Fixed ./annotation/plasmodium-1716.xml\n",
            "Fixed ./annotation/plasmodium-0366.xml\n",
            "Fixed ./annotation/plasmodium-2145.xml\n",
            "Fixed ./annotation/plasmodium-2529.xml\n",
            "Fixed ./annotation/plasmodium-1152.xml\n",
            "Fixed ./annotation/plasmodium-2281.xml\n",
            "Fixed ./annotation/plasmodium-0145.xml\n",
            "Fixed ./annotation/plasmodium-0815.xml\n",
            "Fixed ./annotation/plasmodium-1406.xml\n",
            "Fixed ./annotation/plasmodium-1642.xml\n",
            "Fixed ./annotation/plasmodium-0361.xml\n",
            "Fixed ./annotation/plasmodium-0520.xml\n",
            "Fixed ./annotation/plasmodium-1859.xml\n",
            "Fixed ./annotation/plasmodium-1680.xml\n",
            "Fixed ./annotation/plasmodium-0756.xml\n",
            "Fixed ./annotation/plasmodium-2012.xml\n",
            "Fixed ./annotation/plasmodium-2043.xml\n",
            "Fixed ./annotation/plasmodium-2484.xml\n",
            "Fixed ./annotation/plasmodium-2288.xml\n",
            "Fixed ./annotation/plasmodium-1855.xml\n",
            "Fixed ./annotation/plasmodium-2464.xml\n",
            "Fixed ./annotation/plasmodium-1242.xml\n",
            "Fixed ./annotation/plasmodium-1490.xml\n",
            "Fixed ./annotation/plasmodium-0962.xml\n",
            "Fixed ./annotation/plasmodium-0463.xml\n",
            "Fixed ./annotation/plasmodium-2371.xml\n",
            "Fixed ./annotation/plasmodium-0389.xml\n",
            "Fixed ./annotation/plasmodium-0438.xml\n",
            "Fixed ./annotation/plasmodium-2054.xml\n",
            "Fixed ./annotation/plasmodium-1985.xml\n",
            "Fixed ./annotation/plasmodium-2285.xml\n",
            "Fixed ./annotation/plasmodium-1892.xml\n",
            "Fixed ./annotation/plasmodium-0721.xml\n",
            "Fixed ./annotation/plasmodium-0242.xml\n",
            "Fixed ./annotation/plasmodium-0094.xml\n",
            "Fixed ./annotation/plasmodium-2684.xml\n",
            "Fixed ./annotation/plasmodium-1306.xml\n",
            "Fixed ./annotation/plasmodium-1816.xml\n",
            "Fixed ./annotation/plasmodium-1673.xml\n",
            "Fixed ./annotation/plasmodium-1574.xml\n",
            "Fixed ./annotation/plasmodium-1362.xml\n",
            "Fixed ./annotation/plasmodium-2664.xml\n",
            "Fixed ./annotation/plasmodium-0417.xml\n",
            "Fixed ./annotation/plasmodium-1790.xml\n",
            "Fixed ./annotation/plasmodium-0846.xml\n",
            "Fixed ./annotation/plasmodium-1919.xml\n",
            "Fixed ./annotation/plasmodium-2229.xml\n",
            "Fixed ./annotation/plasmodium-1908.xml\n",
            "Fixed ./annotation/plasmodium-1702.xml\n",
            "Fixed ./annotation/plasmodium-0236.xml\n",
            "Fixed ./annotation/plasmodium-0512.xml\n",
            "Fixed ./annotation/plasmodium-2679.xml\n",
            "Fixed ./annotation/plasmodium-1983.xml\n",
            "Fixed ./annotation/plasmodium-0579.xml\n",
            "Fixed ./annotation/plasmodium-1687.xml\n",
            "Fixed ./annotation/plasmodium-2152.xml\n",
            "Fixed ./annotation/plasmodium-2606.xml\n",
            "Fixed ./annotation/plasmodium-1803.xml\n",
            "Fixed ./annotation/plasmodium-0405.xml\n",
            "Fixed ./annotation/plasmodium-1486.xml\n",
            "Fixed ./annotation/plasmodium-1761.xml\n",
            "Fixed ./annotation/plasmodium-0647.xml\n",
            "Fixed ./annotation/plasmodium-2430.xml\n",
            "Fixed ./annotation/plasmodium-1806.xml\n",
            "Fixed ./annotation/plasmodium-2629.xml\n",
            "Fixed ./annotation/plasmodium-1059.xml\n",
            "Fixed ./annotation/plasmodium-1518.xml\n",
            "Fixed ./annotation/plasmodium-1298.xml\n",
            "Fixed ./annotation/plasmodium-1275.xml\n",
            "Fixed ./annotation/plasmodium-2319.xml\n",
            "Fixed ./annotation/plasmodium-2506.xml\n",
            "Fixed ./annotation/plasmodium-1587.xml\n",
            "Fixed ./annotation/plasmodium-0164.xml\n",
            "Fixed ./annotation/plasmodium-1156.xml\n",
            "Fixed ./annotation/plasmodium-0818.xml\n",
            "Fixed ./annotation/plasmodium-0985.xml\n",
            "Fixed ./annotation/plasmodium-0076.xml\n",
            "Fixed ./annotation/plasmodium-1805.xml\n",
            "Fixed ./annotation/plasmodium-0574.xml\n",
            "Fixed ./annotation/plasmodium-2539.xml\n",
            "Fixed ./annotation/plasmodium-1247.xml\n",
            "Fixed ./annotation/plasmodium-2265.xml\n",
            "Fixed ./annotation/plasmodium-0744.xml\n",
            "Fixed ./annotation/plasmodium-0869.xml\n",
            "Fixed ./annotation/plasmodium-1596.xml\n",
            "Fixed ./annotation/plasmodium-0928.xml\n",
            "Fixed ./annotation/plasmodium-2292.xml\n",
            "Fixed ./annotation/plasmodium-1072.xml\n",
            "Fixed ./annotation/plasmodium-1347.xml\n",
            "Fixed ./annotation/plasmodium-2662.xml\n",
            "Fixed ./annotation/plasmodium-1096.xml\n",
            "Fixed ./annotation/plasmodium-2579.xml\n",
            "Fixed ./annotation/plasmodium-2220.xml\n",
            "Fixed ./annotation/plasmodium-2507.xml\n",
            "Fixed ./annotation/plasmodium-2389.xml\n",
            "Fixed ./annotation/plasmodium-1506.xml\n",
            "Fixed ./annotation/plasmodium-1850.xml\n",
            "Fixed ./annotation/plasmodium-1991.xml\n",
            "Fixed ./annotation/plasmodium-1627.xml\n",
            "Fixed ./annotation/plasmodium-1960.xml\n",
            "Fixed ./annotation/plasmodium-1206.xml\n",
            "Fixed ./annotation/plasmodium-0190.xml\n",
            "Fixed ./annotation/plasmodium-1398.xml\n",
            "Fixed ./annotation/plasmodium-0066.xml\n",
            "Fixed ./annotation/plasmodium-1938.xml\n",
            "Fixed ./annotation/plasmodium-1658.xml\n",
            "Fixed ./annotation/plasmodium-1246.xml\n",
            "Fixed ./annotation/plasmodium-0252.xml\n",
            "Fixed ./annotation/plasmodium-1968.xml\n",
            "Fixed ./annotation/plasmodium-2071.xml\n",
            "Fixed ./annotation/plasmodium-2691.xml\n",
            "Fixed ./annotation/plasmodium-0413.xml\n",
            "Fixed ./annotation/plasmodium-1205.xml\n",
            "Fixed ./annotation/plasmodium-1696.xml\n",
            "Fixed ./annotation/plasmodium-1231.xml\n",
            "Fixed ./annotation/plasmodium-1621.xml\n",
            "Fixed ./annotation/plasmodium-1565.xml\n",
            "Fixed ./annotation/plasmodium-0296.xml\n",
            "Fixed ./annotation/plasmodium-0523.xml\n",
            "Fixed ./annotation/plasmodium-0457.xml\n",
            "Fixed ./annotation/plasmodium-1402.xml\n",
            "Fixed ./annotation/plasmodium-1388.xml\n",
            "Fixed ./annotation/plasmodium-2653.xml\n",
            "Fixed ./annotation/plasmodium-0128.xml\n",
            "Fixed ./annotation/plasmodium-1139.xml\n",
            "Fixed ./annotation/plasmodium-1235.xml\n",
            "Fixed ./annotation/plasmodium-1615.xml\n",
            "Fixed ./annotation/plasmodium-2009.xml\n",
            "Fixed ./annotation/plasmodium-1540.xml\n",
            "Fixed ./annotation/plasmodium-1140.xml\n",
            "Fixed ./annotation/plasmodium-0168.xml\n",
            "Fixed ./annotation/plasmodium-1736.xml\n",
            "Fixed ./annotation/plasmodium-2698.xml\n",
            "Fixed ./annotation/plasmodium-2296.xml\n",
            "Fixed ./annotation/plasmodium-1342.xml\n",
            "Fixed ./annotation/plasmodium-0740.xml\n",
            "Fixed ./annotation/plasmodium-2030.xml\n",
            "Fixed ./annotation/plasmodium-2469.xml\n",
            "Fixed ./annotation/plasmodium-0290.xml\n",
            "Fixed ./annotation/plasmodium-1259.xml\n",
            "Fixed ./annotation/plasmodium-0749.xml\n",
            "Fixed ./annotation/plasmodium-1992.xml\n",
            "Fixed ./annotation/plasmodium-0082.xml\n",
            "Fixed ./annotation/plasmodium-0483.xml\n",
            "Fixed ./annotation/plasmodium-2398.xml\n",
            "Fixed ./annotation/plasmodium-2601.xml\n",
            "Fixed ./annotation/plasmodium-0881.xml\n",
            "Fixed ./annotation/plasmodium-0233.xml\n",
            "Fixed ./annotation/plasmodium-0946.xml\n",
            "Fixed ./annotation/plasmodium-1868.xml\n",
            "Fixed ./annotation/plasmodium-0569.xml\n",
            "Fixed ./annotation/plasmodium-0404.xml\n",
            "Fixed ./annotation/plasmodium-2252.xml\n",
            "Fixed ./annotation/plasmodium-1834.xml\n",
            "Fixed ./annotation/plasmodium-0541.xml\n",
            "Fixed ./annotation/plasmodium-2545.xml\n",
            "Fixed ./annotation/plasmodium-1146.xml\n",
            "Fixed ./annotation/plasmodium-0369.xml\n",
            "Fixed ./annotation/plasmodium-1335.xml\n",
            "Fixed ./annotation/plasmodium-0182.xml\n",
            "Fixed ./annotation/plasmodium-0909.xml\n",
            "Fixed ./annotation/plasmodium-1538.xml\n",
            "Fixed ./annotation/plasmodium-1243.xml\n",
            "Fixed ./annotation/plasmodium-2658.xml\n",
            "Fixed ./annotation/plasmodium-0714.xml\n",
            "Fixed ./annotation/plasmodium-0529.xml\n",
            "Fixed ./annotation/plasmodium-1683.xml\n",
            "Fixed ./annotation/plasmodium-0179.xml\n",
            "Fixed ./annotation/plasmodium-0484.xml\n",
            "Fixed ./annotation/plasmodium-1905.xml\n",
            "Fixed ./annotation/plasmodium-0266.xml\n",
            "Fixed ./annotation/plasmodium-0166.xml\n",
            "Fixed ./annotation/plasmodium-2025.xml\n",
            "Fixed ./annotation/plasmodium-0972.xml\n",
            "Fixed ./annotation/plasmodium-1089.xml\n",
            "Fixed ./annotation/plasmodium-1115.xml\n",
            "Fixed ./annotation/plasmodium-2559.xml\n",
            "Fixed ./annotation/plasmodium-2286.xml\n",
            "Fixed ./annotation/plasmodium-2574.xml\n",
            "Fixed ./annotation/plasmodium-0393.xml\n",
            "Fixed ./annotation/plasmodium-1357.xml\n",
            "Fixed ./annotation/plasmodium-1925.xml\n",
            "Fixed ./annotation/plasmodium-2486.xml\n",
            "Fixed ./annotation/plasmodium-1159.xml\n",
            "Fixed ./annotation/plasmodium-2350.xml\n",
            "Fixed ./annotation/plasmodium-1655.xml\n",
            "Fixed ./annotation/plasmodium-1423.xml\n",
            "Fixed ./annotation/plasmodium-0919.xml\n",
            "Fixed ./annotation/plasmodium-2644.xml\n",
            "Fixed ./annotation/plasmodium-1890.xml\n",
            "Fixed ./annotation/plasmodium-2183.xml\n",
            "Fixed ./annotation/plasmodium-1345.xml\n",
            "Fixed ./annotation/plasmodium-0401.xml\n",
            "Fixed ./annotation/plasmodium-2409.xml\n",
            "Fixed ./annotation/plasmodium-0524.xml\n",
            "Fixed ./annotation/plasmodium-0692.xml\n",
            "Fixed ./annotation/plasmodium-1083.xml\n",
            "Fixed ./annotation/plasmodium-0671.xml\n",
            "Fixed ./annotation/plasmodium-0683.xml\n",
            "Fixed ./annotation/plasmodium-2633.xml\n",
            "Fixed ./annotation/plasmodium-0870.xml\n",
            "Fixed ./annotation/plasmodium-2417.xml\n",
            "Fixed ./annotation/plasmodium-0616.xml\n",
            "Fixed ./annotation/plasmodium-1757.xml\n",
            "Fixed ./annotation/plasmodium-0981.xml\n",
            "Fixed ./annotation/plasmodium-2070.xml\n",
            "Fixed ./annotation/plasmodium-2238.xml\n",
            "Fixed ./annotation/plasmodium-1272.xml\n",
            "Fixed ./annotation/plasmodium-2078.xml\n",
            "Fixed ./annotation/plasmodium-2396.xml\n",
            "Fixed ./annotation/plasmodium-0636.xml\n",
            "Fixed ./annotation/plasmodium-0040.xml\n",
            "Fixed ./annotation/plasmodium-1904.xml\n",
            "Fixed ./annotation/plasmodium-0770.xml\n",
            "Fixed ./annotation/plasmodium-0958.xml\n",
            "Fixed ./annotation/plasmodium-1935.xml\n",
            "Fixed ./annotation/plasmodium-2065.xml\n",
            "Fixed ./annotation/plasmodium-0341.xml\n",
            "Fixed ./annotation/plasmodium-0713.xml\n",
            "Fixed ./annotation/plasmodium-1743.xml\n",
            "Fixed ./annotation/plasmodium-2625.xml\n",
            "Fixed ./annotation/plasmodium-0948.xml\n",
            "Fixed ./annotation/plasmodium-2087.xml\n",
            "Fixed ./annotation/plasmodium-0800.xml\n",
            "Fixed ./annotation/plasmodium-0988.xml\n",
            "Fixed ./annotation/plasmodium-1066.xml\n",
            "Fixed ./annotation/plasmodium-0822.xml\n",
            "Fixed ./annotation/plasmodium-1441.xml\n",
            "Fixed ./annotation/plasmodium-1858.xml\n",
            "Fixed ./annotation/plasmodium-0337.xml\n",
            "Fixed ./annotation/plasmodium-0842.xml\n",
            "Fixed ./annotation/plasmodium-2271.xml\n",
            "Fixed ./annotation/plasmodium-0670.xml\n",
            "Fixed ./annotation/plasmodium-2227.xml\n",
            "Fixed ./annotation/plasmodium-1322.xml\n",
            "Fixed ./annotation/plasmodium-2439.xml\n",
            "Fixed ./annotation/plasmodium-0004.xml\n",
            "Fixed ./annotation/plasmodium-1170.xml\n",
            "Fixed ./annotation/plasmodium-1947.xml\n",
            "Fixed ./annotation/plasmodium-0014.xml\n",
            "Fixed ./annotation/plasmodium-0181.xml\n",
            "Fixed ./annotation/plasmodium-0131.xml\n",
            "Fixed ./annotation/plasmodium-2701.xml\n",
            "Fixed ./annotation/plasmodium-1260.xml\n",
            "Fixed ./annotation/plasmodium-1467.xml\n",
            "Fixed ./annotation/plasmodium-1770.xml\n",
            "Fixed ./annotation/plasmodium-0606.xml\n",
            "Fixed ./annotation/plasmodium-0091.xml\n",
            "Fixed ./annotation/plasmodium-1808.xml\n",
            "Fixed ./annotation/plasmodium-0059.xml\n",
            "Fixed ./annotation/plasmodium-0516.xml\n",
            "Fixed ./annotation/plasmodium-2096.xml\n",
            "Fixed ./annotation/plasmodium-0033.xml\n",
            "Fixed ./annotation/plasmodium-1784.xml\n",
            "Fixed ./annotation/plasmodium-2374.xml\n",
            "Fixed ./annotation/plasmodium-1028.xml\n",
            "Fixed ./annotation/plasmodium-1664.xml\n",
            "Fixed ./annotation/plasmodium-2211.xml\n",
            "Fixed ./annotation/plasmodium-0161.xml\n",
            "Fixed ./annotation/plasmodium-0424.xml\n",
            "Fixed ./annotation/plasmodium-1980.xml\n",
            "Fixed ./annotation/plasmodium-1640.xml\n",
            "Fixed ./annotation/plasmodium-0936.xml\n",
            "Fixed ./annotation/plasmodium-1672.xml\n",
            "Fixed ./annotation/plasmodium-0398.xml\n",
            "Fixed ./annotation/plasmodium-2700.xml\n",
            "Fixed ./annotation/plasmodium-1731.xml\n",
            "Fixed ./annotation/plasmodium-2102.xml\n",
            "Fixed ./annotation/plasmodium-0727.xml\n",
            "Fixed ./annotation/plasmodium-2309.xml\n",
            "Fixed ./annotation/plasmodium-0690.xml\n",
            "Fixed ./annotation/plasmodium-2268.xml\n",
            "Fixed ./annotation/plasmodium-1117.xml\n",
            "Fixed ./annotation/plasmodium-0198.xml\n",
            "Fixed ./annotation/plasmodium-0113.xml\n",
            "Fixed ./annotation/plasmodium-0046.xml\n",
            "Fixed ./annotation/plasmodium-0135.xml\n",
            "Fixed ./annotation/plasmodium-0156.xml\n",
            "Fixed ./annotation/plasmodium-0698.xml\n",
            "Fixed ./annotation/plasmodium-1676.xml\n",
            "Fixed ./annotation/plasmodium-1961.xml\n",
            "Fixed ./annotation/plasmodium-1719.xml\n",
            "Fixed ./annotation/plasmodium-1742.xml\n",
            "Fixed ./annotation/plasmodium-2570.xml\n",
            "Fixed ./annotation/plasmodium-2206.xml\n",
            "Fixed ./annotation/plasmodium-1923.xml\n",
            "Fixed ./annotation/plasmodium-2553.xml\n",
            "Fixed ./annotation/plasmodium-0485.xml\n",
            "Fixed ./annotation/plasmodium-2568.xml\n",
            "Fixed ./annotation/plasmodium-1729.xml\n",
            "Fixed ./annotation/plasmodium-0120.xml\n",
            "Fixed ./annotation/plasmodium-1899.xml\n",
            "Fixed ./annotation/plasmodium-1464.xml\n",
            "Fixed ./annotation/plasmodium-0027.xml\n",
            "Fixed ./annotation/plasmodium-2645.xml\n",
            "Fixed ./annotation/plasmodium-1051.xml\n",
            "Fixed ./annotation/plasmodium-0139.xml\n",
            "Fixed ./annotation/plasmodium-2356.xml\n",
            "Fixed ./annotation/plasmodium-1477.xml\n",
            "Fixed ./annotation/plasmodium-0995.xml\n",
            "Fixed ./annotation/plasmodium-0951.xml\n",
            "Fixed ./annotation/plasmodium-0140.xml\n",
            "Fixed ./annotation/plasmodium-1093.xml\n",
            "Fixed ./annotation/plasmodium-1689.xml\n",
            "Fixed ./annotation/plasmodium-1723.xml\n",
            "Fixed ./annotation/plasmodium-1546.xml\n",
            "Fixed ./annotation/plasmodium-1129.xml\n",
            "Fixed ./annotation/plasmodium-0193.xml\n",
            "Fixed ./annotation/plasmodium-1446.xml\n",
            "Fixed ./annotation/plasmodium-1840.xml\n",
            "Fixed ./annotation/plasmodium-1052.xml\n",
            "Fixed ./annotation/plasmodium-1131.xml\n",
            "Fixed ./annotation/plasmodium-2273.xml\n",
            "Fixed ./annotation/plasmodium-2002.xml\n",
            "Fixed ./annotation/plasmodium-1297.xml\n",
            "Fixed ./annotation/plasmodium-0625.xml\n",
            "Fixed ./annotation/plasmodium-2171.xml\n",
            "Fixed ./annotation/plasmodium-1454.xml\n",
            "Fixed ./annotation/plasmodium-1193.xml\n",
            "Fixed ./annotation/plasmodium-0414.xml\n",
            "Fixed ./annotation/plasmodium-0644.xml\n",
            "Fixed ./annotation/plasmodium-1525.xml\n",
            "Fixed ./annotation/plasmodium-0435.xml\n",
            "Fixed ./annotation/plasmodium-0852.xml\n",
            "Fixed ./annotation/plasmodium-2436.xml\n",
            "Fixed ./annotation/plasmodium-0311.xml\n",
            "Fixed ./annotation/plasmodium-1420.xml\n",
            "Fixed ./annotation/plasmodium-1153.xml\n",
            "Fixed ./annotation/plasmodium-2231.xml\n",
            "Fixed ./annotation/plasmodium-1150.xml\n",
            "Fixed ./annotation/plasmodium-2580.xml\n",
            "Fixed ./annotation/plasmodium-2551.xml\n",
            "Fixed ./annotation/plasmodium-1597.xml\n",
            "Fixed ./annotation/plasmodium-2113.xml\n",
            "Fixed ./annotation/plasmodium-0772.xml\n",
            "Fixed ./annotation/plasmodium-1456.xml\n",
            "Fixed ./annotation/plasmodium-2315.xml\n",
            "Fixed ./annotation/plasmodium-2491.xml\n",
            "Fixed ./annotation/plasmodium-2063.xml\n",
            "Fixed ./annotation/plasmodium-0849.xml\n",
            "Fixed ./annotation/plasmodium-0915.xml\n",
            "Fixed ./annotation/plasmodium-1901.xml\n",
            "Fixed ./annotation/plasmodium-0009.xml\n",
            "Fixed ./annotation/plasmodium-2337.xml\n",
            "Fixed ./annotation/plasmodium-2164.xml\n",
            "Fixed ./annotation/plasmodium-1827.xml\n",
            "Fixed ./annotation/plasmodium-2000.xml\n",
            "Fixed ./annotation/plasmodium-1092.xml\n",
            "Fixed ./annotation/plasmodium-2368.xml\n",
            "Fixed ./annotation/plasmodium-2053.xml\n",
            "Fixed ./annotation/plasmodium-2141.xml\n",
            "Fixed ./annotation/plasmodium-1768.xml\n",
            "Fixed ./annotation/plasmodium-0546.xml\n",
            "Fixed ./annotation/plasmodium-0643.xml\n",
            "Fixed ./annotation/plasmodium-2494.xml\n",
            "Fixed ./annotation/plasmodium-0245.xml\n",
            "Fixed ./annotation/plasmodium-1779.xml\n",
            "Fixed ./annotation/plasmodium-2236.xml\n",
            "Fixed ./annotation/plasmodium-0003.xml\n",
            "Fixed ./annotation/plasmodium-2406.xml\n",
            "Fixed ./annotation/plasmodium-0549.xml\n",
            "Fixed ./annotation/plasmodium-0898.xml\n",
            "Fixed ./annotation/plasmodium-1292.xml\n",
            "Fixed ./annotation/plasmodium-1381.xml\n",
            "Fixed ./annotation/plasmodium-0758.xml\n",
            "Fixed ./annotation/plasmodium-2178.xml\n",
            "Fixed ./annotation/plasmodium-2259.xml\n",
            "Fixed ./annotation/plasmodium-2175.xml\n",
            "Fixed ./annotation/plasmodium-1390.xml\n",
            "Fixed ./annotation/plasmodium-1767.xml\n",
            "Fixed ./annotation/plasmodium-0851.xml\n",
            "Fixed ./annotation/plasmodium-1941.xml\n",
            "Fixed ./annotation/plasmodium-2240.xml\n",
            "Fixed ./annotation/plasmodium-0930.xml\n",
            "Fixed ./annotation/plasmodium-1179.xml\n",
            "Fixed ./annotation/plasmodium-1891.xml\n",
            "Fixed ./annotation/plasmodium-1582.xml\n",
            "Fixed ./annotation/plasmodium-1008.xml\n",
            "Fixed ./annotation/plasmodium-0092.xml\n",
            "Fixed ./annotation/plasmodium-0138.xml\n",
            "Fixed ./annotation/plasmodium-0129.xml\n",
            "Fixed ./annotation/plasmodium-1326.xml\n",
            "Fixed ./annotation/plasmodium-1684.xml\n",
            "Fixed ./annotation/plasmodium-2520.xml\n",
            "Fixed ./annotation/plasmodium-2060.xml\n",
            "Fixed ./annotation/plasmodium-0263.xml\n",
            "Fixed ./annotation/plasmodium-1651.xml\n",
            "Fixed ./annotation/plasmodium-1090.xml\n",
            "Fixed ./annotation/plasmodium-0798.xml\n",
            "Fixed ./annotation/plasmodium-1256.xml\n",
            "Fixed ./annotation/plasmodium-0011.xml\n",
            "Fixed ./annotation/plasmodium-1544.xml\n",
            "Fixed ./annotation/plasmodium-2272.xml\n",
            "Fixed ./annotation/plasmodium-0316.xml\n",
            "Fixed ./annotation/plasmodium-1111.xml\n",
            "Fixed ./annotation/plasmodium-2126.xml\n",
            "Fixed ./annotation/plasmodium-0900.xml\n",
            "Fixed ./annotation/plasmodium-0731.xml\n",
            "Fixed ./annotation/plasmodium-0793.xml\n",
            "Fixed ./annotation/plasmodium-0575.xml\n",
            "Fixed ./annotation/plasmodium-0477.xml\n",
            "Fixed ./annotation/plasmodium-0250.xml\n",
            "Fixed ./annotation/plasmodium-0603.xml\n",
            "Fixed ./annotation/plasmodium-1535.xml\n",
            "Fixed ./annotation/plasmodium-0817.xml\n",
            "Fixed ./annotation/plasmodium-0307.xml\n",
            "Fixed ./annotation/plasmodium-0684.xml\n",
            "Fixed ./annotation/plasmodium-2501.xml\n",
            "Fixed ./annotation/plasmodium-1006.xml\n",
            "Fixed ./annotation/plasmodium-1009.xml\n",
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            "Fixed ./annotation/plasmodium-2189.xml\n",
            "Fixed ./annotation/plasmodium-0737.xml\n",
            "Fixed ./annotation/plasmodium-2332.xml\n",
            "Fixed ./annotation/plasmodium-0839.xml\n",
            "Fixed ./annotation/plasmodium-2521.xml\n",
            "Fixed ./annotation/plasmodium-1818.xml\n",
            "Fixed ./annotation/plasmodium-0471.xml\n",
            "Fixed ./annotation/plasmodium-1994.xml\n",
            "Fixed ./annotation/plasmodium-1741.xml\n",
            "Fixed ./annotation/plasmodium-2413.xml\n",
            "Fixed ./annotation/plasmodium-0619.xml\n",
            "Fixed ./annotation/plasmodium-2061.xml\n",
            "Fixed ./annotation/plasmodium-0882.xml\n",
            "Fixed ./annotation/plasmodium-1226.xml\n",
            "Fixed ./annotation/plasmodium-1283.xml\n",
            "Fixed ./annotation/plasmodium-2411.xml\n",
            "Fixed ./annotation/plasmodium-1075.xml\n",
            "Fixed ./annotation/plasmodium-0345.xml\n",
            "Fixed ./annotation/plasmodium-1025.xml\n",
            "Fixed ./annotation/plasmodium-2515.xml\n",
            "Fixed ./annotation/plasmodium-2639.xml\n",
            "Fixed ./annotation/plasmodium-2097.xml\n",
            "Fixed ./annotation/plasmodium-2302.xml\n",
            "Fixed ./annotation/plasmodium-1190.xml\n",
            "Fixed ./annotation/plasmodium-0600.xml\n",
            "Fixed ./annotation/plasmodium-0969.xml\n",
            "Fixed ./annotation/plasmodium-0806.xml\n",
            "Fixed ./annotation/plasmodium-1675.xml\n",
            "Fixed ./annotation/plasmodium-0960.xml\n",
            "Fixed ./annotation/plasmodium-1149.xml\n",
            "Fixed ./annotation/plasmodium-0143.xml\n",
            "Fixed ./annotation/plasmodium-2327.xml\n",
            "Fixed ./annotation/plasmodium-0118.xml\n",
            "Fixed ./annotation/plasmodium-1200.xml\n",
            "Fixed ./annotation/plasmodium-2264.xml\n",
            "Fixed ./annotation/plasmodium-0528.xml\n",
            "Fixed ./annotation/plasmodium-0902.xml\n",
            "Fixed ./annotation/plasmodium-1987.xml\n",
            "Fixed ./annotation/plasmodium-0704.xml\n",
            "Fixed ./annotation/plasmodium-2322.xml\n",
            "Fixed ./annotation/plasmodium-1561.xml\n",
            "Fixed ./annotation/plasmodium-2124.xml\n",
            "Fixed ./annotation/plasmodium-2306.xml\n",
            "Fixed ./annotation/plasmodium-0022.xml\n",
            "Fixed ./annotation/plasmodium-0980.xml\n",
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            "Fixed ./annotation/plasmodium-1458.xml\n",
            "Fixed ./annotation/plasmodium-2138.xml\n",
            "Fixed ./annotation/plasmodium-1208.xml\n",
            "Fixed ./annotation/plasmodium-2112.xml\n",
            "Fixed ./annotation/plasmodium-2274.xml\n",
            "Fixed ./annotation/plasmodium-1239.xml\n",
            "Fixed ./annotation/plasmodium-2702.xml\n",
            "Fixed ./annotation/plasmodium-1845.xml\n",
            "Fixed ./annotation/plasmodium-1753.xml\n",
            "Fixed ./annotation/plasmodium-0171.xml\n",
            "Fixed ./annotation/plasmodium-0346.xml\n",
            "Fixed ./annotation/plasmodium-0581.xml\n",
            "Fixed ./annotation/plasmodium-2047.xml\n",
            "Fixed ./annotation/plasmodium-1902.xml\n",
            "Fixed ./annotation/plasmodium-0090.xml\n",
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            "Fixed ./annotation/plasmodium-0001.xml\n",
            "Fixed ./annotation/plasmodium-0293.xml\n",
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            "Fixed ./annotation/plasmodium-0025.xml\n",
            "Fixed ./annotation/plasmodium-0152.xml\n",
            "Fixed ./annotation/plasmodium-2133.xml\n",
            "Fixed ./annotation/plasmodium-1142.xml\n",
            "Fixed ./annotation/plasmodium-2647.xml\n",
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            "Fixed ./annotation/plasmodium-1199.xml\n",
            "Fixed ./annotation/plasmodium-1914.xml\n",
            "Fixed ./annotation/plasmodium-1782.xml\n",
            "Fixed ./annotation/plasmodium-1364.xml\n",
            "Fixed ./annotation/plasmodium-0081.xml\n",
            "Fixed ./annotation/plasmodium-0330.xml\n",
            "Fixed ./annotation/plasmodium-2232.xml\n",
            "Fixed ./annotation/plasmodium-2344.xml\n",
            "Fixed ./annotation/plasmodium-2535.xml\n",
            "Fixed ./annotation/plasmodium-0808.xml\n",
            "Fixed ./annotation/plasmodium-1801.xml\n",
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            "Fixed ./annotation/plasmodium-2444.xml\n",
            "Fixed ./annotation/plasmodium-1550.xml\n",
            "Fixed ./annotation/plasmodium-2654.xml\n",
            "Fixed ./annotation/plasmodium-0472.xml\n",
            "Fixed ./annotation/plasmodium-2563.xml\n",
            "Fixed ./annotation/plasmodium-0711.xml\n",
            "Fixed ./annotation/plasmodium-0515.xml\n",
            "Fixed ./annotation/plasmodium-0932.xml\n",
            "Fixed ./annotation/plasmodium-0150.xml\n",
            "Fixed ./annotation/plasmodium-0867.xml\n",
            "Fixed ./annotation/plasmodium-0298.xml\n",
            "Fixed ./annotation/plasmodium-2490.xml\n",
            "Fixed ./annotation/plasmodium-0248.xml\n",
            "Fixed ./annotation/plasmodium-2498.xml\n",
            "Fixed ./annotation/plasmodium-0642.xml\n",
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            "Fixed ./annotation/plasmodium-0693.xml\n",
            "Fixed ./annotation/plasmodium-0858.xml\n",
            "Fixed ./annotation/plasmodium-1585.xml\n",
            "Fixed ./annotation/plasmodium-1336.xml\n",
            "Fixed ./annotation/plasmodium-1449.xml\n",
            "Fixed ./annotation/plasmodium-0805.xml\n",
            "Fixed ./annotation/plasmodium-1766.xml\n",
            "Fixed ./annotation/plasmodium-0568.xml\n",
            "Fixed ./annotation/plasmodium-1832.xml\n",
            "Fixed ./annotation/plasmodium-1438.xml\n",
            "Fixed ./annotation/plasmodium-0544.xml\n",
            "Fixed ./annotation/plasmodium-1316.xml\n",
            "Fixed ./annotation/plasmodium-0157.xml\n",
            "Fixed ./annotation/plasmodium-2488.xml\n",
            "Fixed ./annotation/plasmodium-1958.xml\n",
            "Fixed ./annotation/plasmodium-2590.xml\n",
            "Fixed ./annotation/plasmodium-0084.xml\n",
            "Fixed ./annotation/plasmodium-1192.xml\n",
            "Fixed ./annotation/plasmodium-1476.xml\n",
            "Fixed ./annotation/plasmodium-0016.xml\n",
            "Fixed ./annotation/plasmodium-0291.xml\n",
            "Fixed ./annotation/plasmodium-2157.xml\n",
            "Fixed ./annotation/plasmodium-1380.xml\n",
            "Fixed ./annotation/plasmodium-2182.xml\n",
            "Fixed ./annotation/plasmodium-1480.xml\n",
            "Fixed ./annotation/plasmodium-1219.xml\n",
            "Fixed ./annotation/plasmodium-0703.xml\n",
            "Fixed ./annotation/plasmodium-2618.xml\n",
            "Fixed ./annotation/plasmodium-0733.xml\n",
            "Fixed ./annotation/plasmodium-2311.xml\n",
            "Fixed ./annotation/plasmodium-1103.xml\n",
            "Fixed ./annotation/plasmodium-0371.xml\n",
            "Fixed ./annotation/plasmodium-2661.xml\n",
            "Fixed ./annotation/plasmodium-2172.xml\n",
            "Fixed ./annotation/plasmodium-2555.xml\n",
            "Fixed ./annotation/plasmodium-1210.xml\n",
            "Fixed ./annotation/plasmodium-2399.xml\n",
            "Fixed ./annotation/plasmodium-1814.xml\n",
            "Fixed ./annotation/plasmodium-0837.xml\n",
            "Fixed ./annotation/plasmodium-2480.xml\n",
            "Fixed ./annotation/plasmodium-1323.xml\n",
            "Fixed ./annotation/plasmodium-0953.xml\n",
            "Fixed ./annotation/plasmodium-2638.xml\n",
            "Fixed ./annotation/plasmodium-1164.xml\n",
            "Fixed ./annotation/plasmodium-2473.xml\n",
            "Fixed ./annotation/plasmodium-2435.xml\n",
            "Fixed ./annotation/plasmodium-1021.xml\n",
            "Fixed ./annotation/plasmodium-1602.xml\n",
            "Fixed ./annotation/plasmodium-2216.xml\n",
            "Fixed ./annotation/plasmodium-0688.xml\n",
            "Fixed ./annotation/plasmodium-0162.xml\n",
            "Fixed ./annotation/plasmodium-0501.xml\n",
            "Fixed ./annotation/plasmodium-1851.xml\n",
            "Fixed ./annotation/plasmodium-0274.xml\n",
            "Fixed ./annotation/plasmodium-0965.xml\n",
            "Fixed ./annotation/plasmodium-1437.xml\n",
            "Fixed ./annotation/plasmodium-1950.xml\n",
            "Fixed ./annotation/plasmodium-2445.xml\n",
            "Fixed ./annotation/plasmodium-0976.xml\n",
            "Fixed ./annotation/plasmodium-2048.xml\n",
            "Fixed ./annotation/plasmodium-0340.xml\n",
            "Fixed ./annotation/plasmodium-2042.xml\n",
            "Fixed ./annotation/plasmodium-1831.xml\n",
            "Fixed ./annotation/plasmodium-2474.xml\n",
            "Fixed ./annotation/plasmodium-2251.xml\n",
            "Fixed ./annotation/plasmodium-1087.xml\n",
            "Fixed ./annotation/plasmodium-0854.xml\n",
            "Fixed ./annotation/plasmodium-0106.xml\n",
            "Fixed ./annotation/plasmodium-2393.xml\n",
            "Fixed ./annotation/plasmodium-1988.xml\n",
            "Fixed ./annotation/plasmodium-0891.xml\n",
            "Fixed ./annotation/plasmodium-1599.xml\n",
            "Fixed ./annotation/plasmodium-0444.xml\n",
            "Fixed ./annotation/plasmodium-2295.xml\n",
            "Fixed ./annotation/plasmodium-2033.xml\n",
            "Fixed ./annotation/plasmodium-2167.xml\n",
            "Fixed ./annotation/plasmodium-2646.xml\n",
            "Fixed ./annotation/plasmodium-0459.xml\n",
            "Fixed ./annotation/plasmodium-0640.xml\n",
            "Fixed ./annotation/plasmodium-1706.xml\n",
            "Fixed ./annotation/plasmodium-2241.xml\n",
            "Fixed ./annotation/plasmodium-1172.xml\n",
            "Fixed ./annotation/plasmodium-0572.xml\n",
            "Fixed ./annotation/plasmodium-2665.xml\n",
            "Fixed ./annotation/plasmodium-1073.xml\n",
            "Fixed ./annotation/plasmodium-0966.xml\n",
            "Fixed ./annotation/plasmodium-2155.xml\n",
            "Fixed ./annotation/plasmodium-1926.xml\n",
            "Fixed ./annotation/plasmodium-1846.xml\n",
            "Fixed ./annotation/plasmodium-1119.xml\n",
            "Fixed ./annotation/plasmodium-1217.xml\n",
            "Fixed ./annotation/plasmodium-2540.xml\n",
            "Fixed ./annotation/plasmodium-1515.xml\n",
            "Fixed ./annotation/plasmodium-0452.xml\n",
            "Fixed ./annotation/plasmodium-1024.xml\n",
            "Fixed ./annotation/plasmodium-1556.xml\n",
            "Fixed ./annotation/plasmodium-2081.xml\n",
            "Fixed ./annotation/plasmodium-1843.xml\n",
            "Fixed ./annotation/plasmodium-2204.xml\n",
            "Fixed ./annotation/plasmodium-2051.xml\n",
            "Fixed ./annotation/plasmodium-2400.xml\n",
            "Fixed ./annotation/plasmodium-2364.xml\n",
            "Fixed ./annotation/plasmodium-1590.xml\n",
            "Fixed ./annotation/plasmodium-1562.xml\n",
            "Fixed ./annotation/plasmodium-0002.xml\n",
            "Fixed ./annotation/plasmodium-0807.xml\n",
            "Fixed ./annotation/plasmodium-2287.xml\n",
            "Fixed ./annotation/plasmodium-1522.xml\n",
            "Fixed ./annotation/plasmodium-1063.xml\n",
            "Fixed ./annotation/plasmodium-1752.xml\n",
            "Fixed ./annotation/plasmodium-0639.xml\n",
            "Fixed ./annotation/plasmodium-1136.xml\n",
            "Fixed ./annotation/plasmodium-0151.xml\n",
            "Fixed ./annotation/plasmodium-2169.xml\n",
            "Fixed ./annotation/plasmodium-1543.xml\n",
            "Fixed ./annotation/plasmodium-2151.xml\n",
            "Fixed ./annotation/plasmodium-0771.xml\n",
            "Fixed ./annotation/plasmodium-0211.xml\n",
            "Fixed ./annotation/plasmodium-0052.xml\n",
            "Fixed ./annotation/plasmodium-2294.xml\n",
            "Fixed ./annotation/plasmodium-2005.xml\n",
            "Fixed ./annotation/plasmodium-0370.xml\n",
            "Fixed ./annotation/plasmodium-2471.xml\n",
            "Fixed ./annotation/plasmodium-0975.xml\n",
            "Fixed ./annotation/plasmodium-0729.xml\n",
            "Fixed ./annotation/plasmodium-0271.xml\n",
            "Fixed ./annotation/plasmodium-2222.xml\n",
            "Fixed ./annotation/plasmodium-2692.xml\n",
            "Fixed ./annotation/plasmodium-0446.xml\n",
            "Fixed ./annotation/plasmodium-2262.xml\n",
            "Fixed ./annotation/plasmodium-0607.xml\n",
            "Fixed ./annotation/plasmodium-0608.xml\n",
            "Fixed ./annotation/plasmodium-2162.xml\n",
            "Fixed ./annotation/plasmodium-2565.xml\n",
            "Fixed ./annotation/plasmodium-1470.xml\n",
            "Fixed ./annotation/plasmodium-2624.xml\n",
            "Fixed ./annotation/plasmodium-2173.xml\n",
            "Fixed ./annotation/plasmodium-2316.xml\n",
            "Fixed ./annotation/plasmodium-1971.xml\n",
            "Fixed ./annotation/plasmodium-1781.xml\n",
            "Fixed ./annotation/plasmodium-2589.xml\n",
            "Fixed ./annotation/plasmodium-1964.xml\n",
            "Fixed ./annotation/plasmodium-1534.xml\n",
            "Fixed ./annotation/plasmodium-2668.xml\n",
            "Fixed ./annotation/plasmodium-0349.xml\n",
            "Fixed ./annotation/plasmodium-0942.xml\n",
            "Fixed ./annotation/plasmodium-0328.xml\n",
            "Fixed ./annotation/plasmodium-0373.xml\n",
            "Fixed ./annotation/plasmodium-2420.xml\n",
            "Fixed ./annotation/plasmodium-2362.xml\n",
            "Fixed ./annotation/plasmodium-1708.xml\n",
            "Fixed ./annotation/plasmodium-1109.xml\n",
            "Fixed ./annotation/plasmodium-2258.xml\n",
            "Fixed ./annotation/plasmodium-0666.xml\n",
            "Fixed ./annotation/plasmodium-1709.xml\n",
            "Fixed ./annotation/plasmodium-2408.xml\n",
            "Fixed ./annotation/plasmodium-1670.xml\n",
            "Fixed ./annotation/plasmodium-2139.xml\n",
            "Fixed ./annotation/plasmodium-2397.xml\n",
            "Fixed ./annotation/plasmodium-0034.xml\n",
            "Fixed ./annotation/plasmodium-1314.xml\n",
            "Fixed ./annotation/plasmodium-1916.xml\n",
            "Fixed ./annotation/plasmodium-1732.xml\n",
            "Fixed ./annotation/plasmodium-1177.xml\n",
            "Fixed ./annotation/plasmodium-2341.xml\n",
            "Fixed ./annotation/plasmodium-2248.xml\n",
            "Fixed ./annotation/plasmodium-0812.xml\n",
            "Fixed ./annotation/plasmodium-0949.xml\n",
            "Fixed ./annotation/plasmodium-2027.xml\n",
            "Fixed ./annotation/plasmodium-0399.xml\n",
            "Fixed ./annotation/plasmodium-1315.xml\n",
            "Fixed ./annotation/plasmodium-0445.xml\n",
            "Fixed ./annotation/plasmodium-0180.xml\n",
            "Fixed ./annotation/plasmodium-2153.xml\n",
            "Fixed ./annotation/plasmodium-1128.xml\n",
            "Fixed ./annotation/plasmodium-0556.xml\n",
            "Fixed ./annotation/plasmodium-0494.xml\n",
            "Fixed ./annotation/plasmodium-0249.xml\n",
            "Fixed ./annotation/plasmodium-0933.xml\n",
            "Fixed ./annotation/plasmodium-1594.xml\n",
            "Fixed ./annotation/plasmodium-0752.xml\n",
            "Fixed ./annotation/plasmodium-1657.xml\n",
            "Fixed ./annotation/plasmodium-1415.xml\n",
            "Fixed ./annotation/plasmodium-1447.xml\n",
            "Fixed ./annotation/plasmodium-2660.xml\n",
            "Fixed ./annotation/plasmodium-0351.xml\n",
            "Fixed ./annotation/plasmodium-2388.xml\n",
            "Fixed ./annotation/plasmodium-0451.xml\n",
            "Fixed ./annotation/plasmodium-0712.xml\n",
            "Fixed ./annotation/plasmodium-1436.xml\n",
            "Fixed ./annotation/plasmodium-1411.xml\n",
            "Fixed ./annotation/plasmodium-0051.xml\n",
            "Fixed ./annotation/plasmodium-2310.xml\n",
            "Fixed ./annotation/plasmodium-1472.xml\n",
            "Fixed ./annotation/plasmodium-1930.xml\n",
            "Fixed ./annotation/plasmodium-0237.xml\n",
            "Fixed ./annotation/plasmodium-0979.xml\n",
            "Fixed ./annotation/plasmodium-1826.xml\n",
            "Fixed ./annotation/plasmodium-1558.xml\n",
            "Fixed ./annotation/plasmodium-1769.xml\n",
            "Fixed ./annotation/plasmodium-0437.xml\n",
            "Fixed ./annotation/plasmodium-1870.xml\n",
            "Fixed ./annotation/plasmodium-0479.xml\n",
            "Fixed ./annotation/plasmodium-1473.xml\n",
            "Fixed ./annotation/plasmodium-2020.xml\n",
            "Fixed ./annotation/plasmodium-0876.xml\n",
            "Fixed ./annotation/plasmodium-0124.xml\n",
            "Fixed ./annotation/plasmodium-0146.xml\n",
            "Fixed ./annotation/plasmodium-2508.xml\n",
            "Fixed ./annotation/plasmodium-2392.xml\n",
            "Fixed ./annotation/plasmodium-0916.xml\n",
            "Fixed ./annotation/plasmodium-1468.xml\n",
            "Fixed ./annotation/plasmodium-0747.xml\n",
            "Fixed ./annotation/plasmodium-2511.xml\n",
            "Fixed ./annotation/plasmodium-1431.xml\n",
            "Fixed ./annotation/plasmodium-2421.xml\n",
            "Fixed ./annotation/plasmodium-0885.xml\n",
            "Fixed ./annotation/plasmodium-2394.xml\n",
            "Fixed ./annotation/plasmodium-0646.xml\n",
            "Fixed ./annotation/plasmodium-1700.xml\n",
            "Fixed ./annotation/plasmodium-2010.xml\n",
            "Fixed ./annotation/plasmodium-1463.xml\n",
            "Fixed ./annotation/plasmodium-2462.xml\n",
            "Fixed ./annotation/plasmodium-1496.xml\n",
            "Fixed ./annotation/plasmodium-1270.xml\n",
            "Fixed ./annotation/plasmodium-1055.xml\n",
            "Fixed ./annotation/plasmodium-2077.xml\n",
            "Fixed ./annotation/plasmodium-0286.xml\n",
            "Fixed ./annotation/plasmodium-2004.xml\n",
            "Fixed ./annotation/plasmodium-2069.xml\n",
            "Fixed ./annotation/plasmodium-2084.xml\n",
            "Fixed ./annotation/plasmodium-2214.xml\n",
            "Fixed ./annotation/plasmodium-0542.xml\n",
            "Fixed ./annotation/plasmodium-1101.xml\n",
            "Fixed ./annotation/plasmodium-0795.xml\n",
            "Fixed ./annotation/plasmodium-1078.xml\n",
            "Fixed ./annotation/plasmodium-1442.xml\n",
            "Fixed ./annotation/plasmodium-2331.xml\n",
            "Fixed ./annotation/plasmodium-0070.xml\n",
            "Fixed ./annotation/plasmodium-0433.xml\n",
            "Fixed ./annotation/plasmodium-0586.xml\n",
            "Fixed ./annotation/plasmodium-1940.xml\n",
            "Fixed ./annotation/plasmodium-0029.xml\n",
            "Fixed ./annotation/plasmodium-2298.xml\n",
            "Fixed ./annotation/plasmodium-0641.xml\n",
            "Fixed ./annotation/plasmodium-0270.xml\n",
            "Fixed ./annotation/plasmodium-0538.xml\n",
            "Fixed ./annotation/plasmodium-1346.xml\n",
            "Fixed ./annotation/plasmodium-2269.xml\n",
            "Fixed ./annotation/plasmodium-0779.xml\n",
            "Fixed ./annotation/plasmodium-1545.xml\n",
            "Fixed ./annotation/plasmodium-2578.xml\n",
            "Fixed ./annotation/plasmodium-1403.xml\n",
            "Fixed ./annotation/plasmodium-0013.xml\n",
            "Fixed ./annotation/plasmodium-0105.xml\n",
            "Fixed ./annotation/plasmodium-1387.xml\n",
            "Fixed ./annotation/plasmodium-2620.xml\n",
            "Fixed ./annotation/plasmodium-1400.xml\n",
            "Fixed ./annotation/plasmodium-0006.xml\n",
            "Fixed ./annotation/plasmodium-2410.xml\n",
            "Fixed ./annotation/plasmodium-1563.xml\n",
            "Fixed ./annotation/plasmodium-0669.xml\n",
            "Fixed ./annotation/plasmodium-1029.xml\n",
            "Fixed ./annotation/plasmodium-2447.xml\n",
            "Fixed ./annotation/plasmodium-1504.xml\n",
            "Fixed ./annotation/plasmodium-0460.xml\n",
            "Fixed ./annotation/plasmodium-0594.xml\n",
            "Fixed ./annotation/plasmodium-0172.xml\n",
            "Fixed ./annotation/plasmodium-0379.xml\n",
            "Fixed ./annotation/plasmodium-2029.xml\n",
            "Fixed ./annotation/plasmodium-1108.xml\n",
            "Fixed ./annotation/plasmodium-1037.xml\n",
            "Fixed ./annotation/plasmodium-0229.xml\n",
            "Fixed ./annotation/plasmodium-0443.xml\n",
            "Fixed ./annotation/plasmodium-1785.xml\n",
            "Fixed ./annotation/plasmodium-0072.xml\n",
            "Fixed ./annotation/plasmodium-0095.xml\n",
            "Fixed ./annotation/plasmodium-0609.xml\n",
            "Fixed ./annotation/plasmodium-2549.xml\n",
            "Fixed ./annotation/plasmodium-1952.xml\n",
            "Fixed ./annotation/plasmodium-2366.xml\n",
            "Fixed ./annotation/plasmodium-1050.xml\n",
            "Fixed ./annotation/plasmodium-2372.xml\n",
            "Fixed ./annotation/plasmodium-2185.xml\n",
            "Fixed ./annotation/plasmodium-0974.xml\n",
            "Fixed ./annotation/plasmodium-0908.xml\n",
            "Fixed ./annotation/plasmodium-2643.xml\n",
            "Fixed ./annotation/plasmodium-2682.xml\n",
            "Fixed ./annotation/plasmodium-1712.xml\n",
            "Fixed ./annotation/plasmodium-2187.xml\n",
            "Fixed ./annotation/plasmodium-2577.xml\n",
            "Fixed ./annotation/plasmodium-2433.xml\n",
            "Fixed ./annotation/plasmodium-1734.xml\n",
            "Fixed ./annotation/plasmodium-1887.xml\n",
            "Fixed ./annotation/plasmodium-1295.xml\n",
            "Fixed ./annotation/plasmodium-2104.xml\n",
            "Fixed ./annotation/plasmodium-1332.xml\n",
            "Fixed ./annotation/plasmodium-2572.xml\n",
            "Fixed ./annotation/plasmodium-2450.xml\n",
            "Fixed ./annotation/plasmodium-1227.xml\n",
            "Fixed ./annotation/plasmodium-1328.xml\n",
            "Fixed ./annotation/plasmodium-2472.xml\n",
            "Fixed ./annotation/plasmodium-0360.xml\n",
            "Fixed ./annotation/plasmodium-2338.xml\n",
            "Fixed ./annotation/plasmodium-2680.xml\n",
            "Fixed ./annotation/plasmodium-0442.xml\n",
            "Fixed ./annotation/plasmodium-2031.xml\n",
            "Fixed ./annotation/plasmodium-0121.xml\n",
            "Fixed ./annotation/plasmodium-0525.xml\n",
            "Fixed ./annotation/plasmodium-2056.xml\n",
            "Fixed ./annotation/plasmodium-1835.xml\n",
            "Fixed ./annotation/plasmodium-1452.xml\n",
            "Fixed ./annotation/plasmodium-0873.xml\n",
            "Fixed ./annotation/plasmodium-0358.xml\n",
            "Fixed ./annotation/plasmodium-0667.xml\n",
            "Fixed ./annotation/plasmodium-1510.xml\n",
            "Fixed ./annotation/plasmodium-0447.xml\n",
            "Fixed ./annotation/plasmodium-1836.xml\n",
            "Fixed ./annotation/plasmodium-1744.xml\n",
            "Fixed ./annotation/plasmodium-1682.xml\n",
            "Fixed ./annotation/plasmodium-0462.xml\n",
            "Fixed ./annotation/plasmodium-2353.xml\n",
            "Fixed ./annotation/plasmodium-1656.xml\n",
            "Fixed ./annotation/plasmodium-2557.xml\n",
            "Fixed ./annotation/plasmodium-0169.xml\n",
            "Fixed ./annotation/plasmodium-2522.xml\n",
            "Fixed ./annotation/plasmodium-1727.xml\n",
            "Fixed ./annotation/plasmodium-2244.xml\n",
            "Fixed ./annotation/plasmodium-0830.xml\n",
            "Fixed ./annotation/plasmodium-2561.xml\n",
            "Fixed ./annotation/plasmodium-1725.xml\n",
            "Fixed ./annotation/plasmodium-2649.xml\n",
            "Fixed ./annotation/plasmodium-2599.xml\n",
            "Fixed ./annotation/plasmodium-0725.xml\n",
            "Fixed ./annotation/plasmodium-2481.xml\n",
            "Fixed ./annotation/plasmodium-2381.xml\n",
            "Fixed ./annotation/plasmodium-2631.xml\n",
            "Fixed ./annotation/plasmodium-0318.xml\n",
            "Fixed ./annotation/plasmodium-0303.xml\n",
            "Fixed ./annotation/plasmodium-1269.xml\n",
            "Fixed ./annotation/plasmodium-0277.xml\n",
            "Fixed ./annotation/plasmodium-0955.xml\n",
            "Fixed ./annotation/plasmodium-1310.xml\n",
            "Fixed ./annotation/plasmodium-2651.xml\n",
            "Fixed ./annotation/plasmodium-0225.xml\n",
            "Fixed ./annotation/plasmodium-0983.xml\n",
            "Fixed ./annotation/plasmodium-1011.xml\n",
            "Fixed ./annotation/plasmodium-0526.xml\n",
            "Fixed ./annotation/plasmodium-2230.xml\n",
            "Fixed ./annotation/plasmodium-2614.xml\n",
            "Fixed ./annotation/plasmodium-2531.xml\n",
            "Fixed ./annotation/plasmodium-1509.xml\n",
            "Fixed ./annotation/plasmodium-0604.xml\n",
            "Fixed ./annotation/plasmodium-2446.xml\n",
            "Fixed ./annotation/plasmodium-0689.xml\n",
            "Fixed ./annotation/plasmodium-0015.xml\n",
            "Fixed ./annotation/plasmodium-0937.xml\n",
            "Fixed ./annotation/plasmodium-0467.xml\n",
            "Fixed ./annotation/plasmodium-2523.xml\n",
            "Fixed ./annotation/plasmodium-1268.xml\n",
            "Fixed ./annotation/plasmodium-1375.xml\n",
            "Fixed ./annotation/plasmodium-0195.xml\n",
            "Fixed ./annotation/plasmodium-1080.xml\n",
            "Fixed ./annotation/plasmodium-1810.xml\n",
            "Fixed ./annotation/plasmodium-1993.xml\n",
            "Fixed ./annotation/plasmodium-1903.xml\n",
            "Fixed ./annotation/plasmodium-0872.xml\n",
            "Fixed ./annotation/plasmodium-2276.xml\n",
            "Fixed ./annotation/plasmodium-1344.xml\n",
            "Fixed ./annotation/plasmodium-2560.xml\n",
            "Fixed ./annotation/plasmodium-0543.xml\n",
            "Fixed ./annotation/plasmodium-1823.xml\n",
            "Fixed ./annotation/plasmodium-1355.xml\n",
            "Fixed ./annotation/plasmodium-1130.xml\n",
            "Fixed ./annotation/plasmodium-2086.xml\n",
            "Fixed ./annotation/plasmodium-1412.xml\n",
            "Fixed ./annotation/plasmodium-1376.xml\n",
            "Fixed ./annotation/plasmodium-1312.xml\n",
            "Fixed ./annotation/plasmodium-0117.xml\n",
            "Fixed ./annotation/plasmodium-1427.xml\n",
            "Fixed ./annotation/plasmodium-1300.xml\n",
            "Fixed ./annotation/plasmodium-2325.xml\n",
            "Fixed ./annotation/plasmodium-0223.xml\n",
            "Fixed ./annotation/plasmodium-0425.xml\n",
            "Fixed ./annotation/plasmodium-0785.xml\n",
            "Fixed ./annotation/plasmodium-2448.xml\n",
            "Fixed ./annotation/plasmodium-2428.xml\n",
            "Fixed ./annotation/plasmodium-1233.xml\n",
            "Fixed ./annotation/plasmodium-1351.xml\n",
            "Fixed ./annotation/plasmodium-0498.xml\n",
            "Fixed ./annotation/plasmodium-0963.xml\n",
            "Fixed ./annotation/plasmodium-0338.xml\n",
            "Fixed ./annotation/plasmodium-0329.xml\n",
            "Fixed ./annotation/plasmodium-1626.xml\n",
            "Fixed ./annotation/plasmodium-0007.xml\n",
            "Fixed ./annotation/plasmodium-2321.xml\n",
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            "Fixed ./annotation/plasmodium-1962.xml\n",
            "Fixed ./annotation/plasmodium-0258.xml\n",
            "Fixed ./annotation/plasmodium-2355.xml\n",
            "Fixed ./annotation/plasmodium-2105.xml\n",
            "Fixed ./annotation/plasmodium-1100.xml\n",
            "Fixed ./annotation/plasmodium-2641.xml\n",
            "Fixed ./annotation/plasmodium-2673.xml\n",
            "Fixed ./annotation/plasmodium-0968.xml\n",
            "Fixed ./annotation/plasmodium-2194.xml\n",
            "Fixed ./annotation/plasmodium-1660.xml\n",
            "Fixed ./annotation/plasmodium-2602.xml\n",
            "Fixed ./annotation/plasmodium-2699.xml\n",
            "Fixed ./annotation/plasmodium-2326.xml\n",
            "Fixed ./annotation/plasmodium-0348.xml\n",
            "Fixed ./annotation/plasmodium-0065.xml\n",
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            "Fixed ./annotation/plasmodium-1774.xml\n",
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            "Fixed ./annotation/plasmodium-2196.xml\n",
            "Fixed ./annotation/plasmodium-1253.xml\n",
            "Fixed ./annotation/plasmodium-1478.xml\n",
            "Fixed ./annotation/plasmodium-0952.xml\n",
            "Fixed ./annotation/plasmodium-1307.xml\n",
            "Fixed ./annotation/plasmodium-0622.xml\n",
            "Fixed ./annotation/plasmodium-0887.xml\n",
            "Fixed ./annotation/plasmodium-0701.xml\n",
            "Fixed ./annotation/plasmodium-1410.xml\n",
            "Fixed ./annotation/plasmodium-1374.xml\n",
            "Fixed ./annotation/plasmodium-1017.xml\n",
            "Fixed ./annotation/plasmodium-1793.xml\n",
            "Fixed ./annotation/plasmodium-2677.xml\n",
            "Fixed ./annotation/plasmodium-2015.xml\n",
            "Fixed ./annotation/plasmodium-2127.xml\n",
            "Fixed ./annotation/plasmodium-0218.xml\n",
            "Fixed ./annotation/plasmodium-0035.xml\n",
            "Fixed ./annotation/plasmodium-0419.xml\n",
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            "Fixed ./annotation/plasmodium-1198.xml\n",
            "Fixed ./annotation/plasmodium-2619.xml\n",
            "Fixed ./annotation/plasmodium-1396.xml\n",
            "Fixed ./annotation/plasmodium-1107.xml\n",
            "Fixed ./annotation/plasmodium-0996.xml\n",
            "Fixed ./annotation/plasmodium-0235.xml\n",
            "Fixed ./annotation/plasmodium-0323.xml\n",
            "Fixed ./annotation/plasmodium-0203.xml\n",
            "Fixed ./annotation/plasmodium-0552.xml\n",
            "Fixed ./annotation/plasmodium-1218.xml\n",
            "Fixed ./annotation/plasmodium-1319.xml\n",
            "Fixed ./annotation/plasmodium-2470.xml\n",
            "Fixed ./annotation/plasmodium-2554.xml\n",
            "Fixed ./annotation/plasmodium-1603.xml\n",
            "Fixed ./annotation/plasmodium-1444.xml\n",
            "Fixed ./annotation/plasmodium-1282.xml\n",
            "Fixed ./annotation/plasmodium-0904.xml\n",
            "Fixed ./annotation/plasmodium-1125.xml\n",
            "Fixed ./annotation/plasmodium-2431.xml\n",
            "Fixed ./annotation/plasmodium-0730.xml\n",
            "Fixed ./annotation/plasmodium-1813.xml\n",
            "Fixed ./annotation/plasmodium-0840.xml\n",
            "Fixed ./annotation/plasmodium-2635.xml\n",
            "Fixed ./annotation/plasmodium-0492.xml\n",
            "Fixed ./annotation/plasmodium-1989.xml\n",
            "Fixed ./annotation/plasmodium-1645.xml\n",
            "Fixed ./annotation/plasmodium-0069.xml\n",
            "Fixed ./annotation/plasmodium-1760.xml\n",
            "Fixed ./annotation/plasmodium-1532.xml\n",
            "Fixed ./annotation/plasmodium-1417.xml\n",
            "Fixed ./annotation/plasmodium-0828.xml\n",
            "Fixed ./annotation/plasmodium-0792.xml\n",
            "Fixed ./annotation/plasmodium-0186.xml\n",
            "Fixed ./annotation/plasmodium-1963.xml\n",
            "Fixed ./annotation/plasmodium-2492.xml\n",
            "Fixed ./annotation/plasmodium-2609.xml\n",
            "Fixed ./annotation/plasmodium-0532.xml\n",
            "Fixed ./annotation/plasmodium-1601.xml\n",
            "Fixed ./annotation/plasmodium-0056.xml\n",
            "Fixed ./annotation/plasmodium-0618.xml\n",
            "Fixed ./annotation/plasmodium-1669.xml\n",
            "Fixed ./annotation/plasmodium-2074.xml\n",
            "Fixed ./annotation/plasmodium-1439.xml\n",
            "Fixed ./annotation/plasmodium-0403.xml\n",
            "Fixed ./annotation/plasmodium-0739.xml\n",
            "Fixed ./annotation/plasmodium-0509.xml\n",
            "Fixed ./annotation/plasmodium-0820.xml\n",
            "Fixed ./annotation/plasmodium-2200.xml\n",
            "Fixed ./annotation/plasmodium-0220.xml\n",
            "Fixed ./annotation/plasmodium-1927.xml\n",
            "Fixed ./annotation/plasmodium-0384.xml\n",
            "Fixed ./annotation/plasmodium-1688.xml\n",
            "Fixed ./annotation/plasmodium-0000.xml\n",
            "Fixed ./annotation/plasmodium-1148.xml\n",
            "Fixed ./annotation/plasmodium-1616.xml\n",
            "Fixed ./annotation/plasmodium-2083.xml\n",
            "Fixed ./annotation/plasmodium-1276.xml\n",
            "Fixed ./annotation/plasmodium-2093.xml\n",
            "Fixed ./annotation/plasmodium-1416.xml\n",
            "Fixed ./annotation/plasmodium-0068.xml\n",
            "Fixed ./annotation/plasmodium-2500.xml\n",
            "Fixed ./annotation/plasmodium-2089.xml\n",
            "Fixed ./annotation/plasmodium-0392.xml\n",
            "Fixed ./annotation/plasmodium-1305.xml\n",
            "Fixed ./annotation/plasmodium-1356.xml\n",
            "Fixed ./annotation/plasmodium-0103.xml\n",
            "Fixed ./annotation/plasmodium-1913.xml\n",
            "Fixed ./annotation/plasmodium-0481.xml\n",
            "Fixed ./annotation/plasmodium-1455.xml\n",
            "Fixed ./annotation/plasmodium-1354.xml\n",
            "Fixed ./annotation/plasmodium-0527.xml\n",
            "Fixed ./annotation/plasmodium-0522.xml\n",
            "Fixed ./annotation/plasmodium-1255.xml\n",
            "Fixed ./annotation/plasmodium-0418.xml\n",
            "Fixed ./annotation/plasmodium-1155.xml\n",
            "Fixed ./annotation/plasmodium-2587.xml\n",
            "Fixed ./annotation/plasmodium-2632.xml\n",
            "Fixed ./annotation/plasmodium-1461.xml\n",
            "Fixed ./annotation/plasmodium-2289.xml\n",
            "Fixed ./annotation/plasmodium-0831.xml\n",
            "Fixed ./annotation/plasmodium-0309.xml\n",
            "Fixed ./annotation/plasmodium-0993.xml\n",
            "Fixed ./annotation/plasmodium-0696.xml\n",
            "Fixed ./annotation/plasmodium-0064.xml\n",
            "Fixed ./annotation/plasmodium-2533.xml\n",
            "Fixed ./annotation/plasmodium-0199.xml\n",
            "Fixed ./annotation/plasmodium-2496.xml\n",
            "Fixed ./annotation/plasmodium-2174.xml\n",
            "Fixed ./annotation/plasmodium-2301.xml\n",
            "Fixed ./annotation/plasmodium-0626.xml\n",
            "Fixed ./annotation/plasmodium-2365.xml\n",
            "Fixed ./annotation/plasmodium-2125.xml\n",
            "Fixed ./annotation/plasmodium-0196.xml\n",
            "Fixed ./annotation/plasmodium-0096.xml\n",
            "Fixed ./annotation/plasmodium-2208.xml\n",
            "Fixed ./annotation/plasmodium-1254.xml\n",
            "Fixed ./annotation/plasmodium-0578.xml\n",
            "Fixed ./annotation/plasmodium-0662.xml\n",
            "Fixed ./annotation/plasmodium-0026.xml\n",
            "Fixed ./annotation/plasmodium-1608.xml\n",
            "Fixed ./annotation/plasmodium-0187.xml\n",
            "Fixed ./annotation/plasmodium-1560.xml\n",
            "Fixed ./annotation/plasmodium-2518.xml\n",
            "Fixed ./annotation/plasmodium-1721.xml\n",
            "Fixed ./annotation/plasmodium-0939.xml\n",
            "Fixed ./annotation/plasmodium-2284.xml\n",
            "Fixed ./annotation/plasmodium-2123.xml\n",
            "Fixed ./annotation/plasmodium-1686.xml\n",
            "Fixed ./annotation/plasmodium-1788.xml\n",
            "Fixed ./annotation/plasmodium-2453.xml\n",
            "Fixed ./annotation/plasmodium-2528.xml\n",
            "Fixed ./annotation/plasmodium-0406.xml\n",
            "Fixed ./annotation/plasmodium-0893.xml\n",
            "Fixed ./annotation/plasmodium-0530.xml\n",
            "Fixed ./annotation/plasmodium-0513.xml\n",
            "Fixed ./annotation/plasmodium-1604.xml\n",
            "Fixed ./annotation/plasmodium-0049.xml\n",
            "Fixed ./annotation/plasmodium-2503.xml\n",
            "Fixed ./annotation/plasmodium-0423.xml\n",
            "Fixed ./annotation/plasmodium-1839.xml\n",
            "Fixed ./annotation/plasmodium-1308.xml\n",
            "Fixed ./annotation/plasmodium-1502.xml\n",
            "Fixed ./annotation/plasmodium-0773.xml\n",
            "Fixed ./annotation/plasmodium-1221.xml\n",
            "Fixed ./annotation/plasmodium-2352.xml\n",
            "Fixed ./annotation/plasmodium-0021.xml\n",
            "Fixed ./annotation/plasmodium-0221.xml\n",
            "Fixed ./annotation/plasmodium-0381.xml\n",
            "Fixed ./annotation/plasmodium-0343.xml\n",
            "Fixed ./annotation/plasmodium-0262.xml\n",
            "Fixed ./annotation/plasmodium-0327.xml\n",
            "Fixed ./annotation/plasmodium-2181.xml\n",
            "Fixed ./annotation/plasmodium-2090.xml\n",
            "Fixed ./annotation/plasmodium-0746.xml\n",
            "Fixed ./annotation/plasmodium-0077.xml\n",
            "Fixed ./annotation/plasmodium-0611.xml\n",
            "Fixed ./annotation/plasmodium-1869.xml\n",
            "Fixed ./annotation/plasmodium-1309.xml\n",
            "Fixed ./annotation/plasmodium-2014.xml\n",
            "Fixed ./annotation/plasmodium-1249.xml\n",
            "Fixed ./annotation/plasmodium-2121.xml\n",
            "Fixed ./annotation/plasmodium-0602.xml\n",
            "Fixed ./annotation/plasmodium-0888.xml\n",
            "Fixed ./annotation/plasmodium-0899.xml\n",
            "Fixed ./annotation/plasmodium-1074.xml\n",
            "Fixed ./annotation/plasmodium-1973.xml\n",
            "Fixed ./annotation/plasmodium-0648.xml\n",
            "Fixed ./annotation/plasmodium-0751.xml\n",
            "Fixed ./annotation/plasmodium-1939.xml\n",
            "Fixed ./annotation/plasmodium-1979.xml\n",
            "Fixed ./annotation/plasmodium-2267.xml\n",
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            "Fixed ./annotation/plasmodium-0637.xml\n",
            "Fixed ./annotation/plasmodium-2092.xml\n",
            "Fixed ./annotation/plasmodium-1969.xml\n",
            "Fixed ./annotation/plasmodium-0635.xml\n",
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            "Fixed ./annotation/plasmodium-1799.xml\n",
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            "Fixed ./annotation/plasmodium-1612.xml\n",
            "Fixed ./annotation/plasmodium-1191.xml\n",
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            "Fixed ./annotation/plasmodium-0409.xml\n",
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            "Fixed ./annotation/plasmodium-2465.xml\n",
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            "Fixed ./annotation/plasmodium-0057.xml\n",
            "Fixed ./annotation/plasmodium-2161.xml\n",
            "Fixed ./annotation/plasmodium-2225.xml\n",
            "Fixed ./annotation/plasmodium-2583.xml\n",
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            "Fixed ./annotation/plasmodium-0673.xml\n",
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            "Fixed ./annotation/plasmodium-2038.xml\n",
            "Fixed ./annotation/plasmodium-0506.xml\n",
            "Fixed ./annotation/plasmodium-1957.xml\n",
            "Fixed ./annotation/plasmodium-1185.xml\n",
            "Fixed ./annotation/plasmodium-1022.xml\n",
            "Fixed ./annotation/plasmodium-0354.xml\n",
            "Fixed ./annotation/plasmodium-0099.xml\n",
            "Fixed ./annotation/plasmodium-2256.xml\n",
            "Fixed ./annotation/plasmodium-2416.xml\n",
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            "Fixed ./annotation/plasmodium-1872.xml\n",
            "Fixed ./annotation/plasmodium-1909.xml\n",
            "Fixed ./annotation/plasmodium-0468.xml\n",
            "Fixed ./annotation/plasmodium-1659.xml\n",
            "Fixed ./annotation/plasmodium-1638.xml\n",
            "Fixed ./annotation/plasmodium-1880.xml\n",
            "Fixed ./annotation/plasmodium-2076.xml\n",
            "Fixed ./annotation/plasmodium-1508.xml\n",
            "Fixed ./annotation/plasmodium-1023.xml\n",
            "Fixed ./annotation/plasmodium-2613.xml\n",
            "Fixed ./annotation/plasmodium-2457.xml\n",
            "Fixed ./annotation/plasmodium-1920.xml\n",
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            "Fixed ./annotation/plasmodium-2016.xml\n",
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            "Fixed ./annotation/plasmodium-2373.xml\n",
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            "Fixed ./annotation/plasmodium-1187.xml\n",
            "Fixed ./annotation/plasmodium-1368.xml\n",
            "Fixed ./annotation/plasmodium-0300.xml\n",
            "Fixed ./annotation/plasmodium-2530.xml\n",
            "Fixed ./annotation/plasmodium-1174.xml\n",
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            "Fixed ./annotation/plasmodium-1479.xml\n",
            "Fixed ./annotation/plasmodium-1161.xml\n",
            "Fixed ./annotation/plasmodium-0375.xml\n",
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            "Fixed ./annotation/plasmodium-0776.xml\n",
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            "Fixed ./annotation/plasmodium-1365.xml\n",
            "Fixed ./annotation/plasmodium-1800.xml\n",
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            "Fixed ./annotation/plasmodium-1068.xml\n",
            "Fixed ./annotation/plasmodium-1184.xml\n",
            "Fixed ./annotation/plasmodium-2375.xml\n",
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            "Fixed ./annotation/plasmodium-0368.xml\n",
            "Fixed ./annotation/plasmodium-1212.xml\n",
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            "Fixed ./annotation/plasmodium-1370.xml\n",
            "Fixed ./annotation/plasmodium-1134.xml\n",
            "Fixed ./annotation/plasmodium-1567.xml\n",
            "Fixed ./annotation/plasmodium-2001.xml\n",
            "Fixed ./annotation/plasmodium-0774.xml\n",
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            "Fixed ./annotation/plasmodium-0255.xml\n",
            "Fixed ./annotation/plasmodium-1005.xml\n",
            "Fixed ./annotation/plasmodium-0243.xml\n",
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            "Fixed ./annotation/plasmodium-1001.xml\n",
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            "Fixed ./annotation/plasmodium-0111.xml\n",
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            "Fixed ./annotation/plasmodium-1620.xml\n",
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            "Fixed ./annotation/plasmodium-0210.xml\n",
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            "Fixed ./annotation/plasmodium-1519.xml\n",
            "Fixed ./annotation/plasmodium-1016.xml\n",
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            "Fixed ./annotation/plasmodium-2246.xml\n",
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            "Fixed ./annotation/plasmodium-2346.xml\n",
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            "Fixed ./annotation/plasmodium-1554.xml\n",
            "Fixed ./annotation/plasmodium-0159.xml\n",
            "Fixed ./annotation/plasmodium-2516.xml\n",
            "Fixed ./annotation/plasmodium-1435.xml\n",
            "Fixed ./annotation/plasmodium-0585.xml\n",
            "Fixed ./annotation/plasmodium-0924.xml\n",
            "Fixed ./annotation/plasmodium-0810.xml\n",
            "Fixed ./annotation/plasmodium-2414.xml\n",
            "Fixed ./annotation/plasmodium-1789.xml\n",
            "Fixed ./annotation/plasmodium-1138.xml\n",
            "Fixed ./annotation/plasmodium-0768.xml\n",
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            "Fixed ./annotation/plasmodium-0213.xml\n",
            "Fixed ./annotation/plasmodium-1862.xml\n",
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            "Fixed ./annotation/plasmodium-2571.xml\n",
            "Fixed ./annotation/plasmodium-2243.xml\n",
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            "Fixed ./annotation/plasmodium-1225.xml\n",
            "Fixed ./annotation/plasmodium-0722.xml\n",
            "Fixed ./annotation/plasmodium-1290.xml\n",
            "Fixed ./annotation/plasmodium-1460.xml\n",
            "Fixed ./annotation/plasmodium-0834.xml\n",
            "Fixed ./annotation/plasmodium-0502.xml\n",
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            "Fixed ./annotation/plasmodium-2581.xml\n",
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            "Fixed ./annotation/plasmodium-1888.xml\n",
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            "Fixed ./annotation/plasmodium-1224.xml\n",
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            "Fixed ./annotation/plasmodium-0723.xml\n",
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            "Fixed ./annotation/plasmodium-2018.xml\n",
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            "Fixed ./annotation/plasmodium-1085.xml\n",
            "Fixed ./annotation/plasmodium-0491.xml\n",
            "Fixed ./annotation/plasmodium-1787.xml\n",
            "Fixed ./annotation/plasmodium-2239.xml\n",
            "Fixed ./annotation/plasmodium-0878.xml\n",
            "Fixed ./annotation/plasmodium-0396.xml\n",
            "Fixed ./annotation/plasmodium-1422.xml\n",
            "Fixed ./annotation/plasmodium-1122.xml\n",
            "Fixed ./annotation/plasmodium-0702.xml\n",
            "Fixed ./annotation/plasmodium-0282.xml\n",
            "Fixed ./annotation/plasmodium-2693.xml\n",
            "Fixed ./annotation/plasmodium-1598.xml\n",
            "Fixed ./annotation/plasmodium-2666.xml\n",
            "Fixed ./annotation/plasmodium-0621.xml\n",
            "Fixed ./annotation/plasmodium-0284.xml\n",
            "Fixed ./annotation/plasmodium-1491.xml\n",
            "Fixed ./annotation/plasmodium-1533.xml\n",
            "Fixed ./annotation/plasmodium-0685.xml\n",
            "Fixed ./annotation/plasmodium-2505.xml\n",
            "Fixed ./annotation/plasmodium-2057.xml\n",
            "Fixed ./annotation/plasmodium-0402.xml\n",
            "Fixed ./annotation/plasmodium-2367.xml\n",
            "Fixed ./annotation/plasmodium-1047.xml\n",
            "Fixed ./annotation/plasmodium-0707.xml\n",
            "Fixed ./annotation/plasmodium-0269.xml\n",
            "Fixed ./annotation/plasmodium-1607.xml\n",
            "Fixed ./annotation/plasmodium-1917.xml\n",
            "Fixed ./annotation/plasmodium-0488.xml\n",
            "Fixed ./annotation/plasmodium-0391.xml\n",
            "Fixed ./annotation/plasmodium-1677.xml\n",
            "Fixed ./annotation/plasmodium-0184.xml\n",
            "Fixed ./annotation/plasmodium-0420.xml\n",
            "Fixed ./annotation/plasmodium-0686.xml\n",
            "Fixed ./annotation/plasmodium-0434.xml\n",
            "Fixed ./annotation/plasmodium-2478.xml\n",
            "Fixed ./annotation/plasmodium-0658.xml\n",
            "Fixed ./annotation/plasmodium-1280.xml\n",
            "Fixed ./annotation/plasmodium-0155.xml\n",
            "Fixed ./annotation/plasmodium-0272.xml\n",
            "Fixed ./annotation/plasmodium-2148.xml\n",
            "Fixed ./annotation/plasmodium-1495.xml\n",
            "Fixed ./annotation/plasmodium-0241.xml\n",
            "Fixed ./annotation/plasmodium-1575.xml\n",
            "Fixed ./annotation/plasmodium-2201.xml\n",
            "Fixed ./annotation/plasmodium-1897.xml\n",
            "Fixed ./annotation/plasmodium-1624.xml\n",
            "Fixed ./annotation/plasmodium-2103.xml\n",
            "Fixed ./annotation/plasmodium-0085.xml\n",
            "Fixed ./annotation/plasmodium-1027.xml\n",
            "Fixed ./annotation/plasmodium-1105.xml\n",
            "Fixed ./annotation/plasmodium-1465.xml\n",
            "Fixed ./annotation/plasmodium-0257.xml\n",
            "Fixed ./annotation/plasmodium-2328.xml\n",
            "Fixed ./annotation/plasmodium-0945.xml\n",
            "Fixed ./annotation/plasmodium-2255.xml\n",
            "Fixed ./annotation/plasmodium-0638.xml\n",
            "Fixed ./annotation/plasmodium-1772.xml\n",
            "Fixed ./annotation/plasmodium-0907.xml\n",
            "Fixed ./annotation/plasmodium-1035.xml\n",
            "Fixed ./annotation/plasmodium-0158.xml\n",
            "Fixed ./annotation/plasmodium-1507.xml\n",
            "Fixed ./annotation/plasmodium-2068.xml\n",
            "Fixed ./annotation/plasmodium-0632.xml\n",
            "Fixed ./annotation/plasmodium-0185.xml\n",
            "Fixed ./annotation/plasmodium-1812.xml\n",
            "Fixed ./annotation/plasmodium-1394.xml\n",
            "Fixed ./annotation/plasmodium-1907.xml\n",
            "Fixed ./annotation/plasmodium-0716.xml\n",
            "Fixed ./annotation/plasmodium-0786.xml\n",
            "Fixed ./annotation/plasmodium-0465.xml\n",
            "Fixed ./annotation/plasmodium-0649.xml\n",
            "Fixed ./annotation/plasmodium-1635.xml\n",
            "Fixed ./annotation/plasmodium-0926.xml\n",
            "Fixed ./annotation/plasmodium-1856.xml\n",
            "Fixed ./annotation/plasmodium-0112.xml\n",
            "Fixed ./annotation/plasmodium-0132.xml\n",
            "Fixed ./annotation/plasmodium-0901.xml\n",
            "Fixed ./annotation/plasmodium-0160.xml\n",
            "Fixed ./annotation/plasmodium-1451.xml\n",
            "Fixed ./annotation/plasmodium-1929.xml\n",
            "Fixed ./annotation/plasmodium-0825.xml\n",
            "Fixed ./annotation/plasmodium-2045.xml\n",
            "Fixed ./annotation/plasmodium-0376.xml\n",
            "Fixed ./annotation/plasmodium-2476.xml\n",
            "Fixed ./annotation/plasmodium-1965.xml\n",
            "Fixed ./annotation/plasmodium-2046.xml\n",
            "Fixed ./annotation/plasmodium-1820.xml\n",
            "Fixed ./annotation/plasmodium-1071.xml\n",
            "Fixed ./annotation/plasmodium-1102.xml\n",
            "Fixed ./annotation/plasmodium-0045.xml\n",
            "Fixed ./annotation/plasmodium-1320.xml\n",
            "Fixed ./annotation/plasmodium-0539.xml\n",
            "Fixed ./annotation/plasmodium-0295.xml\n",
            "Fixed ./annotation/plasmodium-2135.xml\n",
            "Fixed ./annotation/plasmodium-0205.xml\n",
            "Fixed ./annotation/plasmodium-0718.xml\n",
            "Fixed ./annotation/plasmodium-1570.xml\n",
            "Fixed ./annotation/plasmodium-0970.xml\n",
            "Fixed ./annotation/plasmodium-0331.xml\n",
            "Fixed ./annotation/plasmodium-2451.xml\n",
            "Fixed ./annotation/plasmodium-2334.xml\n",
            "Fixed ./annotation/plasmodium-2250.xml\n",
            "Fixed ./annotation/plasmodium-2427.xml\n",
            "Fixed ./annotation/plasmodium-1982.xml\n",
            "Fixed ./annotation/plasmodium-1735.xml\n",
            "Fixed ./annotation/plasmodium-1002.xml\n",
            "Fixed ./annotation/plasmodium-1521.xml\n",
            "Fixed ./annotation/plasmodium-2049.xml\n",
            "Fixed ./annotation/plasmodium-0681.xml\n",
            "Fixed ./annotation/plasmodium-0104.xml\n",
            "Fixed ./annotation/plasmodium-2697.xml\n",
            "Fixed ./annotation/plasmodium-1722.xml\n",
            "Fixed ./annotation/plasmodium-0141.xml\n",
            "Fixed ./annotation/plasmodium-0421.xml\n",
            "Fixed ./annotation/plasmodium-2558.xml\n",
            "Fixed ./annotation/plasmodium-0280.xml\n",
            "Fixed ./annotation/plasmodium-1466.xml\n",
            "Fixed ./annotation/plasmodium-1228.xml\n",
            "Fixed ./annotation/plasmodium-2280.xml\n",
            "Fixed ./annotation/plasmodium-0227.xml\n",
            "Fixed ./annotation/plasmodium-2524.xml\n",
            "Fixed ./annotation/plasmodium-2687.xml\n",
            "Fixed ./annotation/plasmodium-0590.xml\n",
            "Fixed ./annotation/plasmodium-2475.xml\n",
            "Fixed ./annotation/plasmodium-1015.xml\n",
            "Fixed ./annotation/plasmodium-2429.xml\n",
            "Fixed ./annotation/plasmodium-1485.xml\n",
            "Fixed ./annotation/plasmodium-0844.xml\n",
            "Fixed ./annotation/plasmodium-1013.xml\n",
            "Fixed ./annotation/plasmodium-1611.xml\n",
            "Fixed ./annotation/plasmodium-0178.xml\n",
            "Fixed ./annotation/plasmodium-2318.xml\n",
            "Fixed ./annotation/plasmodium-1070.xml\n",
            "Fixed ./annotation/plasmodium-0163.xml\n",
            "Fixed ./annotation/plasmodium-2221.xml\n",
            "Fixed ./annotation/plasmodium-0905.xml\n",
            "Fixed ./annotation/plasmodium-0679.xml\n",
            "Fixed ./annotation/plasmodium-2502.xml\n",
            "Fixed ./annotation/plasmodium-0365.xml\n",
            "Fixed ./annotation/plasmodium-1559.xml\n",
            "Fixed ./annotation/plasmodium-2648.xml\n",
            "Fixed ./annotation/plasmodium-2163.xml\n",
            "Fixed ./annotation/plasmodium-0504.xml\n",
            "Fixed ./annotation/plasmodium-0927.xml\n",
            "Fixed ./annotation/plasmodium-0880.xml\n",
            "Fixed ./annotation/plasmodium-2597.xml\n",
            "Fixed ./annotation/plasmodium-0363.xml\n",
            "Fixed ./annotation/plasmodium-0123.xml\n",
            "Fixed ./annotation/plasmodium-1384.xml\n",
            "Fixed ./annotation/plasmodium-0324.xml\n",
            "Fixed ./annotation/plasmodium-0352.xml\n",
            "Fixed ./annotation/plasmodium-0595.xml\n",
            "Fixed ./annotation/plasmodium-0119.xml\n",
            "Fixed ./annotation/plasmodium-0487.xml\n",
            "Fixed ./annotation/plasmodium-2333.xml\n",
            "Fixed ./annotation/plasmodium-1338.xml\n",
            "Fixed ./annotation/plasmodium-1632.xml\n",
            "Fixed ./annotation/plasmodium-0142.xml\n",
            "Fixed ./annotation/plasmodium-0279.xml\n",
            "Fixed ./annotation/plasmodium-2340.xml\n",
            "Fixed ./annotation/plasmodium-1169.xml\n",
            "Fixed ./annotation/plasmodium-0591.xml\n",
            "Fixed ./annotation/plasmodium-0234.xml\n",
            "Fixed ./annotation/plasmodium-1181.xml\n",
            "Fixed ./annotation/plasmodium-1120.xml\n",
            "Fixed ./annotation/plasmodium-2017.xml\n",
            "Fixed ./annotation/plasmodium-0322.xml\n",
            "Fixed ./annotation/plasmodium-2440.xml\n",
            "Fixed ./annotation/plasmodium-0432.xml\n",
            "Fixed ./annotation/plasmodium-2588.xml\n",
            "Fixed ./annotation/plasmodium-0430.xml\n",
            "Fixed ./annotation/plasmodium-0856.xml\n",
            "Fixed ./annotation/plasmodium-2443.xml\n",
            "Fixed ./annotation/plasmodium-1674.xml\n",
            "Fixed ./annotation/plasmodium-1285.xml\n",
            "Fixed ./annotation/plasmodium-2021.xml\n",
            "Fixed ./annotation/plasmodium-2686.xml\n",
            "Fixed ./annotation/plasmodium-1291.xml\n",
            "Fixed ./annotation/plasmodium-0219.xml\n",
            "Fixed ./annotation/plasmodium-1498.xml\n",
            "Fixed ./annotation/plasmodium-0799.xml\n",
            "Fixed ./annotation/plasmodium-2154.xml\n",
            "Fixed ./annotation/plasmodium-0222.xml\n",
            "Fixed ./annotation/plasmodium-0189.xml\n",
            "Fixed ./annotation/plasmodium-0804.xml\n",
            "Fixed ./annotation/plasmodium-0695.xml\n",
            "Fixed ./annotation/plasmodium-0071.xml\n",
            "Fixed ./annotation/plasmodium-2242.xml\n",
            "Fixed ./annotation/plasmodium-0615.xml\n",
            "Fixed ./annotation/plasmodium-1175.xml\n",
            "Fixed ./annotation/plasmodium-1137.xml\n",
            "Fixed ./annotation/plasmodium-2689.xml\n",
            "Fixed ./annotation/plasmodium-1104.xml\n",
            "Fixed ./annotation/plasmodium-2312.xml\n",
            "Fixed ./annotation/plasmodium-0789.xml\n",
            "Fixed ./annotation/plasmodium-2675.xml\n",
            "Fixed ./annotation/plasmodium-0819.xml\n",
            "Fixed ./annotation/plasmodium-2343.xml\n",
            "Fixed ./annotation/plasmodium-1392.xml\n",
            "Fixed ./annotation/plasmodium-2485.xml\n",
            "Fixed ./annotation/plasmodium-0469.xml\n",
            "Fixed ./annotation/plasmodium-0518.xml\n",
            "Fixed ./annotation/plasmodium-1876.xml\n",
            "Fixed ./annotation/plasmodium-0676.xml\n",
            "Fixed ./annotation/plasmodium-0935.xml\n",
            "Fixed ./annotation/plasmodium-2217.xml\n",
            "Fixed ./annotation/plasmodium-2552.xml\n",
            "Fixed ./annotation/plasmodium-0741.xml\n",
            "Fixed ./annotation/plasmodium-1484.xml\n",
            "Fixed ./annotation/plasmodium-0306.xml\n",
            "Fixed ./annotation/plasmodium-2218.xml\n",
            "Fixed ./annotation/plasmodium-2134.xml\n",
            "Fixed ./annotation/plasmodium-1211.xml\n",
            "Fixed ./annotation/plasmodium-1945.xml\n",
            "Fixed ./annotation/plasmodium-1348.xml\n",
            "Fixed ./annotation/plasmodium-2249.xml\n",
            "Fixed ./annotation/plasmodium-0075.xml\n",
            "Fixed ./annotation/plasmodium-1007.xml\n",
            "Fixed ./annotation/plasmodium-2100.xml\n",
            "Fixed ./annotation/plasmodium-2592.xml\n",
            "Fixed ./annotation/plasmodium-1591.xml\n",
            "Fixed ./annotation/plasmodium-0566.xml\n",
            "Fixed ./annotation/plasmodium-2223.xml\n",
            "Fixed ./annotation/plasmodium-1032.xml\n",
            "Fixed ./annotation/plasmodium-0023.xml\n",
            "Fixed ./annotation/plasmodium-1617.xml\n",
            "Fixed ./annotation/plasmodium-0865.xml\n",
            "Fixed ./annotation/plasmodium-0475.xml\n",
            "Fixed ./annotation/plasmodium-1815.xml\n",
            "Fixed ./annotation/plasmodium-0100.xml\n",
            "Fixed ./annotation/plasmodium-0334.xml\n",
            "Fixed ./annotation/plasmodium-1552.xml\n",
            "Fixed ./annotation/plasmodium-0791.xml\n",
            "Fixed ./annotation/plasmodium-1747.xml\n",
            "Fixed ./annotation/plasmodium-1321.xml\n",
            "Fixed ./annotation/plasmodium-2067.xml\n",
            "Fixed ./annotation/plasmodium-1429.xml\n",
            "Fixed ./annotation/plasmodium-2617.xml\n",
            "Fixed ./annotation/plasmodium-2454.xml\n",
            "Fixed ./annotation/plasmodium-0086.xml\n",
            "Fixed ./annotation/plasmodium-0173.xml\n",
            "Fixed ./annotation/plasmodium-1176.xml\n",
            "Fixed ./annotation/plasmodium-1906.xml\n",
            "Fixed ./annotation/plasmodium-0884.xml\n",
            "Fixed ./annotation/plasmodium-1040.xml\n",
            "Fixed ./annotation/plasmodium-2179.xml\n",
            "Fixed ./annotation/plasmodium-0116.xml\n",
            "Fixed ./annotation/plasmodium-0088.xml\n",
            "Fixed ./annotation/plasmodium-0101.xml\n",
            "Fixed ./annotation/plasmodium-0984.xml\n",
            "Fixed ./annotation/plasmodium-0010.xml\n",
            "Fixed ./annotation/plasmodium-0201.xml\n",
            "Fixed ./annotation/plasmodium-1180.xml\n",
            "Fixed ./annotation/plasmodium-2088.xml\n",
            "Fixed ./annotation/plasmodium-1711.xml\n",
            "Fixed ./annotation/plasmodium-1895.xml\n",
            "Fixed ./annotation/plasmodium-2233.xml\n",
            "Fixed ./annotation/plasmodium-2495.xml\n",
            "Fixed ./annotation/plasmodium-0408.xml\n",
            "Fixed ./annotation/plasmodium-1984.xml\n",
            "Fixed ./annotation/plasmodium-0645.xml\n",
            "Fixed ./annotation/plasmodium-1204.xml\n",
            "Fixed ./annotation/plasmodium-1069.xml\n",
            "Fixed ./annotation/plasmodium-2519.xml\n",
            "Fixed ./annotation/plasmodium-1263.xml\n",
            "Fixed ./annotation/plasmodium-1695.xml\n",
            "Fixed ./annotation/plasmodium-1763.xml\n",
            "Fixed ./annotation/plasmodium-0261.xml\n",
            "Fixed ./annotation/plasmodium-0668.xml\n",
            "Fixed ./annotation/plasmodium-0321.xml\n",
            "Fixed ./annotation/plasmodium-1034.xml\n",
            "Fixed ./annotation/plasmodium-1373.xml\n",
            "Fixed ./annotation/plasmodium-0547.xml\n",
            "Fixed ./annotation/plasmodium-2358.xml\n",
            "Fixed ./annotation/plasmodium-0761.xml\n",
            "Fixed ./annotation/plasmodium-0535.xml\n",
            "Fixed ./annotation/plasmodium-1366.xml\n",
            "Fixed ./annotation/plasmodium-1183.xml\n",
            "Fixed ./annotation/plasmodium-0390.xml\n",
            "Fixed ./annotation/plasmodium-1428.xml\n",
            "Fixed ./annotation/plasmodium-0964.xml\n",
            "Fixed ./annotation/plasmodium-1489.xml\n",
            "Fixed ./annotation/plasmodium-0244.xml\n",
            "Fixed ./annotation/plasmodium-2132.xml\n",
            "Fixed ./annotation/plasmodium-0167.xml\n",
            "Fixed ./annotation/plasmodium-2199.xml\n",
            "Fixed ./annotation/plasmodium-2637.xml\n",
            "Fixed ./annotation/plasmodium-1058.xml\n",
            "Fixed ./annotation/plasmodium-0036.xml\n",
            "Fixed ./annotation/plasmodium-1154.xml\n",
            "Fixed ./annotation/plasmodium-1796.xml\n",
            "Fixed ./annotation/plasmodium-0989.xml\n",
            "Fixed ./annotation/plasmodium-2022.xml\n",
            "Fixed ./annotation/plasmodium-1844.xml\n",
            "Fixed ./annotation/plasmodium-1091.xml\n",
            "Fixed ./annotation/plasmodium-0894.xml\n",
            "Fixed ./annotation/plasmodium-0107.xml\n",
            "Fixed ./annotation/plasmodium-0862.xml\n",
            "Fixed ./annotation/plasmodium-1116.xml\n",
            "Fixed ./annotation/plasmodium-0495.xml\n",
            "Fixed ./annotation/plasmodium-1157.xml\n",
            "Fixed ./annotation/plasmodium-1829.xml\n",
            "Fixed ./annotation/plasmodium-1873.xml\n",
            "Fixed ./annotation/plasmodium-2146.xml\n",
            "Fixed ./annotation/plasmodium-0254.xml\n",
            "Fixed ./annotation/plasmodium-0577.xml\n",
            "Fixed ./annotation/plasmodium-2234.xml\n",
            "Fixed ./annotation/plasmodium-1245.xml\n",
            "Fixed ./annotation/plasmodium-1334.xml\n",
            "Fixed ./annotation/plasmodium-0207.xml\n",
            "Fixed ./annotation/plasmodium-2610.xml\n",
            "Fixed ./annotation/plasmodium-1012.xml\n",
            "Fixed ./annotation/plasmodium-2228.xml\n",
            "Fixed ./annotation/plasmodium-1358.xml\n",
            "Fixed ./annotation/plasmodium-0130.xml\n",
            "Fixed ./annotation/plasmodium-0517.xml\n",
            "Fixed ./annotation/plasmodium-0188.xml\n",
            "Fixed ./annotation/plasmodium-1421.xml\n",
            "Fixed ./annotation/plasmodium-0388.xml\n",
            "Fixed ./annotation/plasmodium-1325.xml\n",
            "Fixed ./annotation/plasmodium-0991.xml\n",
            "Fixed ./annotation/plasmodium-1751.xml\n",
            "Fixed ./annotation/plasmodium-1289.xml\n",
            "Fixed ./annotation/plasmodium-1679.xml\n",
            "Fixed ./annotation/plasmodium-1833.xml\n",
            "Fixed ./annotation/plasmodium-1311.xml\n",
            "Fixed ./annotation/plasmodium-1606.xml\n",
            "Fixed ./annotation/plasmodium-0782.xml\n",
            "Fixed ./annotation/plasmodium-1369.xml\n",
            "Fixed ./annotation/plasmodium-1433.xml\n",
            "Fixed ./annotation/plasmodium-2463.xml\n",
            "Fixed ./annotation/plasmodium-0127.xml\n",
            "Fixed ./annotation/plasmodium-1526.xml\n",
            "Fixed ./annotation/plasmodium-0510.xml\n",
            "Fixed ./annotation/plasmodium-1857.xml\n",
            "Fixed ./annotation/plasmodium-0110.xml\n",
            "Fixed ./annotation/plasmodium-0719.xml\n",
            "Fixed ./annotation/plasmodium-1756.xml\n",
            "Fixed ./annotation/plasmodium-1693.xml\n",
            "Fixed ./annotation/plasmodium-1884.xml\n",
            "Fixed ./annotation/plasmodium-1614.xml\n",
            "Fixed ./annotation/plasmodium-0362.xml\n",
            "Fixed ./annotation/plasmodium-1389.xml\n",
            "Fixed ./annotation/plasmodium-1018.xml\n",
            "Fixed ./annotation/plasmodium-0489.xml\n",
            "Fixed ./annotation/plasmodium-2041.xml\n",
            "Fixed ./annotation/plasmodium-2615.xml\n",
            "Fixed ./annotation/plasmodium-1475.xml\n",
            "Fixed ./annotation/plasmodium-2253.xml\n",
            "Fixed ./annotation/plasmodium-0497.xml\n",
            "Fixed ./annotation/plasmodium-1084.xml\n",
            "Fixed ./annotation/plasmodium-1588.xml\n",
            "Fixed ./annotation/plasmodium-2159.xml\n",
            "Fixed ./annotation/plasmodium-0922.xml\n",
            "Fixed ./annotation/plasmodium-1503.xml\n",
            "Fixed ./annotation/plasmodium-2219.xml\n",
            "Fixed ./annotation/plasmodium-1251.xml\n",
            "Fixed ./annotation/plasmodium-1317.xml\n",
            "Fixed ./annotation/plasmodium-2032.xml\n",
            "Fixed ./annotation/plasmodium-1144.xml\n",
            "Fixed ./annotation/plasmodium-2190.xml\n",
            "Fixed ./annotation/plasmodium-0496.xml\n",
            "Fixed ./annotation/plasmodium-1883.xml\n",
            "Fixed ./annotation/plasmodium-1944.xml\n",
            "Fixed ./annotation/plasmodium-0845.xml\n",
            "Fixed ./annotation/plasmodium-1854.xml\n",
            "Fixed ./annotation/plasmodium-2261.xml\n",
            "Fixed ./annotation/plasmodium-0944.xml\n",
            "Fixed ./annotation/plasmodium-1795.xml\n",
            "Fixed ./annotation/plasmodium-2023.xml\n",
            "Fixed ./annotation/plasmodium-1644.xml\n",
            "Fixed ./annotation/plasmodium-1215.xml\n",
            "Fixed ./annotation/plasmodium-1333.xml\n",
            "Fixed ./annotation/plasmodium-2596.xml\n",
            "Fixed ./annotation/plasmodium-1443.xml\n",
            "Fixed ./annotation/plasmodium-0954.xml\n",
            "Fixed ./annotation/plasmodium-1020.xml\n",
            "Fixed ./annotation/plasmodium-1082.xml\n",
            "Fixed ./annotation/plasmodium-2466.xml\n",
            "Fixed ./annotation/plasmodium-1623.xml\n",
            "Fixed ./annotation/plasmodium-2460.xml\n",
            "Fixed ./annotation/plasmodium-1327.xml\n",
            "Fixed ./annotation/plasmodium-0514.xml\n",
            "Fixed ./annotation/plasmodium-0267.xml\n",
            "Fixed ./annotation/plasmodium-1077.xml\n",
            "Fixed ./annotation/plasmodium-0148.xml\n",
            "Fixed ./annotation/plasmodium-2297.xml\n",
            "Fixed ./annotation/plasmodium-0757.xml\n",
            "Fixed ./annotation/plasmodium-1379.xml\n",
            "Fixed ./annotation/plasmodium-2336.xml\n",
            "Fixed ./annotation/plasmodium-0215.xml\n",
            "Fixed ./annotation/plasmodium-0582.xml\n",
            "Fixed ./annotation/plasmodium-2131.xml\n",
            "Fixed ./annotation/plasmodium-1924.xml\n",
            "Fixed ./annotation/plasmodium-1038.xml\n",
            "Fixed ./annotation/plasmodium-1547.xml\n",
            "Fixed ./annotation/plasmodium-0555.xml\n",
            "Fixed ./annotation/plasmodium-1809.xml\n",
            "Fixed ./annotation/plasmodium-0232.xml\n",
            "Fixed ./annotation/plasmodium-1234.xml\n",
            "Fixed ./annotation/plasmodium-0473.xml\n",
            "Fixed ./annotation/plasmodium-0063.xml\n",
            "Fixed ./annotation/plasmodium-0917.xml\n",
            "Fixed ./annotation/plasmodium-1331.xml\n",
            "Fixed ./annotation/plasmodium-1541.xml\n",
            "Fixed ./annotation/plasmodium-1407.xml\n",
            "Fixed ./annotation/plasmodium-1634.xml\n",
            "Fixed ./annotation/plasmodium-2556.xml\n",
            "Fixed ./annotation/plasmodium-2670.xml\n",
            "Fixed ./annotation/plasmodium-1440.xml\n",
            "Fixed ./annotation/plasmodium-0356.xml\n",
            "Fixed ./annotation/plasmodium-0781.xml\n",
            "Fixed ./annotation/plasmodium-1004.xml\n",
            "Fixed ./annotation/plasmodium-0050.xml\n",
            "Fixed ./annotation/plasmodium-0651.xml\n",
            "Fixed ./annotation/plasmodium-0312.xml\n",
            "Fixed ./annotation/plasmodium-2513.xml\n",
            "Fixed ./annotation/plasmodium-1881.xml\n",
            "Fixed ./annotation/plasmodium-0895.xml\n",
            "Fixed ./annotation/plasmodium-2013.xml\n",
            "Fixed ./annotation/plasmodium-0382.xml\n",
            "Fixed ./annotation/plasmodium-0557.xml\n",
            "Fixed ./annotation/plasmodium-0801.xml\n",
            "Fixed ./annotation/plasmodium-2270.xml\n",
            "Fixed ./annotation/plasmodium-0453.xml\n",
            "Fixed ./annotation/plasmodium-0832.xml\n",
            "Fixed ./annotation/plasmodium-2514.xml\n",
            "Fixed ./annotation/plasmodium-0550.xml\n",
            "Fixed ./annotation/plasmodium-0176.xml\n",
            "Fixed ./annotation/plasmodium-2019.xml\n",
            "Fixed ./annotation/plasmodium-2424.xml\n",
            "Fixed ./annotation/plasmodium-2455.xml\n",
            "Fixed ./annotation/plasmodium-1340.xml\n",
            "Fixed ./annotation/plasmodium-2634.xml\n",
            "Fixed ./annotation/plasmodium-2621.xml\n",
            "Fixed ./annotation/plasmodium-1867.xml\n",
            "Fixed ./annotation/plasmodium-0304.xml\n",
            "Fixed ./annotation/plasmodium-0560.xml\n",
            "Fixed ./annotation/plasmodium-1837.xml\n",
            "Fixed ./annotation/plasmodium-1045.xml\n",
            "Fixed ./annotation/plasmodium-1978.xml\n",
            "Fixed ./annotation/plasmodium-1861.xml\n",
            "Fixed ./annotation/plasmodium-1352.xml\n",
            "Fixed ./annotation/plasmodium-2659.xml\n",
            "Fixed ./annotation/plasmodium-1189.xml\n",
            "Fixed ./annotation/plasmodium-0385.xml\n",
            "Fixed ./annotation/plasmodium-0197.xml\n",
            "Fixed ./annotation/plasmodium-0925.xml\n",
            "Fixed ./annotation/plasmodium-2652.xml\n",
            "Fixed ./annotation/plasmodium-1878.xml\n",
            "Fixed ./annotation/plasmodium-1397.xml\n",
            "Fixed ./annotation/plasmodium-2037.xml\n",
            "Fixed ./annotation/plasmodium-0777.xml\n",
            "Fixed ./annotation/plasmodium-2142.xml\n",
            "Fixed ./annotation/plasmodium-1188.xml\n",
            "Fixed ./annotation/plasmodium-0570.xml\n",
            "Fixed ./annotation/plasmodium-0165.xml\n",
            "Fixed ./annotation/plasmodium-0019.xml\n",
            "Fixed ./annotation/plasmodium-1250.xml\n",
            "Fixed ./annotation/plasmodium-2224.xml\n",
            "Fixed ./annotation/plasmodium-0466.xml\n",
            "Fixed ./annotation/plasmodium-0080.xml\n",
            "Fixed ./annotation/plasmodium-0803.xml\n",
            "Fixed ./annotation/plasmodium-2534.xml\n",
            "Fixed ./annotation/plasmodium-0863.xml\n",
            "Fixed ./annotation/plasmodium-0395.xml\n",
            "Fixed ./annotation/plasmodium-1265.xml\n",
            "Fixed ./annotation/plasmodium-0571.xml\n",
            "Fixed ./annotation/plasmodium-1548.xml\n",
            "Fixed ./annotation/plasmodium-2395.xml\n",
            "Fixed ./annotation/plasmodium-0754.xml\n",
            "Fixed ./annotation/plasmodium-1572.xml\n",
            "Fixed ./annotation/plasmodium-1033.xml\n",
            "Fixed ./annotation/plasmodium-1726.xml\n",
            "Fixed ./annotation/plasmodium-0192.xml\n",
            "Fixed ./annotation/plasmodium-1000.xml\n",
            "Fixed ./annotation/plasmodium-2415.xml\n",
            "Fixed ./annotation/plasmodium-0174.xml\n",
            "Fixed ./annotation/plasmodium-2404.xml\n",
            "Fixed ./annotation/plasmodium-2419.xml\n",
            "Fixed ./annotation/plasmodium-0613.xml\n",
            "Fixed ./annotation/plasmodium-1095.xml\n",
            "Fixed ./annotation/plasmodium-0214.xml\n",
            "Fixed ./annotation/plasmodium-1871.xml\n",
            "Fixed ./annotation/plasmodium-2605.xml\n",
            "Fixed ./annotation/plasmodium-0301.xml\n",
            "Fixed ./annotation/plasmodium-0910.xml\n",
            "Fixed ./annotation/plasmodium-1098.xml\n",
            "Fixed ./annotation/plasmodium-0114.xml\n",
            "Fixed ./annotation/plasmodium-0697.xml\n",
            "Fixed ./annotation/plasmodium-1699.xml\n",
            "Fixed ./annotation/plasmodium-0823.xml\n",
            "Fixed ./annotation/plasmodium-1662.xml\n",
            "Fixed ./annotation/plasmodium-2600.xml\n",
            "Fixed ./annotation/plasmodium-1487.xml\n",
            "Fixed ./annotation/plasmodium-0533.xml\n",
            "Fixed ./annotation/plasmodium-2407.xml\n",
            "Fixed ./annotation/plasmodium-2438.xml\n",
            "Fixed ./annotation/plasmodium-2072.xml\n",
            "Fixed ./annotation/plasmodium-2006.xml\n",
            "Fixed ./annotation/plasmodium-1586.xml\n",
            "Fixed ./annotation/plasmodium-2339.xml\n",
            "Fixed ./annotation/plasmodium-0587.xml\n",
            "Fixed ./annotation/plasmodium-1842.xml\n",
            "Fixed ./annotation/plasmodium-2064.xml\n",
            "Fixed ./annotation/plasmodium-0067.xml\n",
            "Fixed ./annotation/plasmodium-1294.xml\n",
            "Fixed ./annotation/plasmodium-1195.xml\n",
            "Fixed ./annotation/plasmodium-0561.xml\n",
            "Fixed ./annotation/plasmodium-2351.xml\n",
            "Fixed ./annotation/plasmodium-0694.xml\n",
            "Fixed ./annotation/plasmodium-1573.xml\n",
            "Fixed ./annotation/plasmodium-1261.xml\n",
            "Fixed ./annotation/plasmodium-1393.xml\n",
            "Fixed ./annotation/plasmodium-2024.xml\n",
            "Fixed ./annotation/plasmodium-2623.xml\n",
            "Fixed ./annotation/plasmodium-2482.xml\n",
            "Fixed ./annotation/plasmodium-2342.xml\n",
            "Fixed ./annotation/plasmodium-1694.xml\n",
            "Fixed ./annotation/plasmodium-0032.xml\n",
            "Fixed ./annotation/plasmodium-1220.xml\n",
            "Fixed ./annotation/plasmodium-0650.xml\n",
            "Fixed ./annotation/plasmodium-1633.xml\n",
            "Fixed ./annotation/plasmodium-2441.xml\n"
          ],
          "name": "stdout"
        }
      ]
    },
    {
      "cell_type": "markdown",
      "metadata": {
        "id": "oQfWG04ElmIM",
        "colab_type": "text"
      },
      "source": [
        "### Split the files"
      ]
    },
    {
      "cell_type": "code",
      "metadata": {
        "id": "nOKAWNaMlXQE",
        "colab_type": "code",
        "colab": {}
      },
      "source": [
        "!mv annotation annotations\n",
        "\n",
        "!mkdir data/\n",
        "!mkdir data/train\n",
        "!mkdir data/validation\n",
        "\n",
        "!mkdir data/train/images\n",
        "!mkdir data/train/annotations\n",
        "\n",
        "!mkdir data/validation/images\n",
        "!mkdir data/validation/annotations"
      ],
      "execution_count": 0,
      "outputs": []
    },
    {
      "cell_type": "code",
      "metadata": {
        "id": "YSkICBehn43J",
        "colab_type": "code",
        "outputId": "61187f8e-750b-4839-bc93-bfb41aa23ca6",
        "colab": {
          "base_uri": "https://localhost:8080/",
          "height": 68
        }
      },
      "source": [
        "import random \n",
        "import shutil\n",
        "\n",
        "img = []\n",
        "xml = []\n",
        "\n",
        "trainPathImages = './data/train/images'\n",
        "trainPathAnnotation = './data/train/annotations'\n",
        "\n",
        "valPathImages = './data/validation/images'\n",
        "valPathAnnotation = './data/validation/annotations'\n",
        "\n",
        "\n",
        "originI = './images'\n",
        "\n",
        "\n",
        "train_ratio = 0.8\n",
        "val_ratio = 1.0 - train_ratio\n",
        "\n",
        "ImgCount = len(os.listdir('./images/'))\n",
        "\n",
        "for (dirname, dirs, files) in os.walk('./images'):\n",
        "        for filename in files:\n",
        "            if filename.endswith('.xml'):\n",
        "                xml.append(filename)\n",
        "            else:\n",
        "                img.append(filename)\n",
        "\n",
        "countForTrain = int(len(img)*train_ratio)\n",
        "countForValidation = int(len(img)*val_ratio)\n",
        "\n",
        "\n",
        "for x in range(countForTrain):\n",
        "  index = random.choice(range(len(img)))\n",
        "  fileJpg = img[index]\n",
        "  fileXml = fileJpg[:-4] +'.xml'\n",
        "\n",
        "  shutil.move(os.path.join('./images/', fileJpg), os.path.join(trainPathImages, fileJpg))\n",
        "  shutil.move(os.path.join('./annotations/', fileXml), os.path.join(trainPathAnnotation, fileXml))\n",
        "\n",
        "  img.remove(fileJpg)\n",
        "   \n",
        "for x in range(countForValidation):\n",
        "    index = random.choice(range(len(img)))\n",
        "    fileJpg = img[index]\n",
        "    fileXml = fileJpg[:-4] +'.xml'\n",
        "\n",
        "    shutil.move(os.path.join('./images', fileJpg), os.path.join(valPathImages, fileJpg))\n",
        "    shutil.move(os.path.join('./annotations', fileXml), os.path.join(valPathAnnotation, fileXml))\n",
        " \n",
        "    img.remove(fileJpg)\n",
        "\n",
        "print('Total images: ', ImgCount)\n",
        "print('Images in train dir:', len(os.listdir(trainPathImages)))\n",
        "print('Images in validation dir:', len(os.listdir(valPathImages)))\n"
      ],
      "execution_count": 0,
      "outputs": [
        {
          "output_type": "stream",
          "text": [
            "Total images:  541\n",
            "Images in train dir: 2594\n",
            "Images in validation dir: 108\n"
          ],
          "name": "stdout"
        }
      ]
    },
    {
      "cell_type": "markdown",
      "metadata": {
        "id": "MJ-YsR_4loih",
        "colab_type": "text"
      },
      "source": [
        "### Install Dependencies"
      ]
    },
    {
      "cell_type": "code",
      "metadata": {
        "id": "oFgdBj1ElwN3",
        "colab_type": "code",
        "outputId": "36356b1f-c054-4a6c-d203-4e851de3222f",
        "colab": {
          "base_uri": "https://localhost:8080/",
          "height": 938
        }
      },
      "source": [
        "!pip3 install tensorflow-gpu==1.13.1\n",
        "!pip3 install imageai --upgrade"
      ],
      "execution_count": 0,
      "outputs": [
        {
          "output_type": "stream",
          "text": [
            "Collecting tensorflow-gpu==1.13.1\n",
            "\u001b[?25l  Downloading https://files.pythonhosted.org/packages/7b/b1/0ad4ae02e17ddd62109cd54c291e311c4b5fd09b4d0678d3d6ce4159b0f0/tensorflow_gpu-1.13.1-cp36-cp36m-manylinux1_x86_64.whl (345.2MB)\n",
            "\u001b[K     |████████████████████████████████| 345.2MB 50kB/s \n",
            "\u001b[?25hRequirement already satisfied: termcolor>=1.1.0 in /usr/local/lib/python3.6/dist-packages (from tensorflow-gpu==1.13.1) (1.1.0)\n",
            "Requirement already satisfied: grpcio>=1.8.6 in /usr/local/lib/python3.6/dist-packages (from tensorflow-gpu==1.13.1) (1.15.0)\n",
            "Requirement already satisfied: numpy>=1.13.3 in /usr/local/lib/python3.6/dist-packages (from tensorflow-gpu==1.13.1) (1.17.3)\n",
            "Requirement already satisfied: six>=1.10.0 in /usr/local/lib/python3.6/dist-packages (from tensorflow-gpu==1.13.1) (1.12.0)\n",
            "Collecting tensorflow-estimator<1.14.0rc0,>=1.13.0\n",
            "\u001b[?25l  Downloading https://files.pythonhosted.org/packages/bb/48/13f49fc3fa0fdf916aa1419013bb8f2ad09674c275b4046d5ee669a46873/tensorflow_estimator-1.13.0-py2.py3-none-any.whl (367kB)\n",
            "\u001b[K     |████████████████████████████████| 368kB 44.3MB/s \n",
            "\u001b[?25hRequirement already satisfied: keras-preprocessing>=1.0.5 in /usr/local/lib/python3.6/dist-packages (from tensorflow-gpu==1.13.1) (1.1.0)\n",
            "Requirement already satisfied: wheel>=0.26 in /usr/local/lib/python3.6/dist-packages (from tensorflow-gpu==1.13.1) (0.33.6)\n",
            "Requirement already satisfied: gast>=0.2.0 in /usr/local/lib/python3.6/dist-packages (from tensorflow-gpu==1.13.1) (0.2.2)\n",
            "Collecting tensorboard<1.14.0,>=1.13.0\n",
            "\u001b[?25l  Downloading https://files.pythonhosted.org/packages/0f/39/bdd75b08a6fba41f098b6cb091b9e8c7a80e1b4d679a581a0ccd17b10373/tensorboard-1.13.1-py3-none-any.whl (3.2MB)\n",
            "\u001b[K     |████████████████████████████████| 3.2MB 27.8MB/s \n",
            "\u001b[?25hRequirement already satisfied: astor>=0.6.0 in /usr/local/lib/python3.6/dist-packages (from tensorflow-gpu==1.13.1) (0.8.0)\n",
            "Requirement already satisfied: absl-py>=0.1.6 in /usr/local/lib/python3.6/dist-packages (from tensorflow-gpu==1.13.1) (0.8.1)\n",
            "Requirement already satisfied: keras-applications>=1.0.6 in /usr/local/lib/python3.6/dist-packages (from tensorflow-gpu==1.13.1) (1.0.8)\n",
            "Requirement already satisfied: protobuf>=3.6.1 in /usr/local/lib/python3.6/dist-packages (from tensorflow-gpu==1.13.1) (3.10.0)\n",
            "Collecting mock>=2.0.0\n",
            "  Downloading https://files.pythonhosted.org/packages/05/d2/f94e68be6b17f46d2c353564da56e6fb89ef09faeeff3313a046cb810ca9/mock-3.0.5-py2.py3-none-any.whl\n",
            "Requirement already satisfied: markdown>=2.6.8 in /usr/local/lib/python3.6/dist-packages (from tensorboard<1.14.0,>=1.13.0->tensorflow-gpu==1.13.1) (3.1.1)\n",
            "Requirement already satisfied: werkzeug>=0.11.15 in /usr/local/lib/python3.6/dist-packages (from tensorboard<1.14.0,>=1.13.0->tensorflow-gpu==1.13.1) (0.16.0)\n",
            "Requirement already satisfied: h5py in /usr/local/lib/python3.6/dist-packages (from keras-applications>=1.0.6->tensorflow-gpu==1.13.1) (2.8.0)\n",
            "Requirement already satisfied: setuptools in /usr/local/lib/python3.6/dist-packages (from protobuf>=3.6.1->tensorflow-gpu==1.13.1) (41.4.0)\n",
            "\u001b[31mERROR: tensorflow 1.15.0 has requirement tensorboard<1.16.0,>=1.15.0, but you'll have tensorboard 1.13.1 which is incompatible.\u001b[0m\n",
            "\u001b[31mERROR: tensorflow 1.15.0 has requirement tensorflow-estimator==1.15.1, but you'll have tensorflow-estimator 1.13.0 which is incompatible.\u001b[0m\n",
            "Installing collected packages: mock, tensorflow-estimator, tensorboard, tensorflow-gpu\n",
            "  Found existing installation: tensorflow-estimator 1.15.1\n",
            "    Uninstalling tensorflow-estimator-1.15.1:\n",
            "      Successfully uninstalled tensorflow-estimator-1.15.1\n",
            "  Found existing installation: tensorboard 1.15.0\n",
            "    Uninstalling tensorboard-1.15.0:\n",
            "      Successfully uninstalled tensorboard-1.15.0\n",
            "Successfully installed mock-3.0.5 tensorboard-1.13.1 tensorflow-estimator-1.13.0 tensorflow-gpu-1.13.1\n",
            "Collecting imageai\n",
            "\u001b[?25l  Downloading https://files.pythonhosted.org/packages/09/99/4023e191a343fb23f01ae02ac57a5ca58037c310e8d8c62f87638a3bafc7/imageai-2.1.5-py3-none-any.whl (180kB)\n",
            "\u001b[K     |████████████████████████████████| 184kB 3.5MB/s \n",
            "\u001b[?25hRequirement already satisfied, skipping upgrade: scipy in /usr/local/lib/python3.6/dist-packages (from imageai) (1.3.1)\n",
            "Requirement already satisfied, skipping upgrade: matplotlib in /usr/local/lib/python3.6/dist-packages (from imageai) (3.1.1)\n",
            "Requirement already satisfied, skipping upgrade: h5py in /usr/local/lib/python3.6/dist-packages (from imageai) (2.8.0)\n",
            "Requirement already satisfied, skipping upgrade: numpy in /usr/local/lib/python3.6/dist-packages (from imageai) (1.17.3)\n",
            "Requirement already satisfied, skipping upgrade: pillow in /usr/local/lib/python3.6/dist-packages (from imageai) (4.3.0)\n",
            "Requirement already satisfied, skipping upgrade: kiwisolver>=1.0.1 in /usr/local/lib/python3.6/dist-packages (from matplotlib->imageai) (1.1.0)\n",
            "Requirement already satisfied, skipping upgrade: cycler>=0.10 in /usr/local/lib/python3.6/dist-packages (from matplotlib->imageai) (0.10.0)\n",
            "Requirement already satisfied, skipping upgrade: pyparsing!=2.0.4,!=2.1.2,!=2.1.6,>=2.0.1 in /usr/local/lib/python3.6/dist-packages (from matplotlib->imageai) (2.4.2)\n",
            "Requirement already satisfied, skipping upgrade: python-dateutil>=2.1 in /usr/local/lib/python3.6/dist-packages (from matplotlib->imageai) (2.6.1)\n",
            "Requirement already satisfied, skipping upgrade: six in /usr/local/lib/python3.6/dist-packages (from h5py->imageai) (1.12.0)\n",
            "Requirement already satisfied, skipping upgrade: olefile in /usr/local/lib/python3.6/dist-packages (from pillow->imageai) (0.46)\n",
            "Requirement already satisfied, skipping upgrade: setuptools in /usr/local/lib/python3.6/dist-packages (from kiwisolver>=1.0.1->matplotlib->imageai) (41.4.0)\n",
            "Installing collected packages: imageai\n",
            "Successfully installed imageai-2.1.5\n"
          ],
          "name": "stdout"
        }
      ]
    },
    {
      "cell_type": "markdown",
      "metadata": {
        "id": "79q2Feq00LIi",
        "colab_type": "text"
      },
      "source": [
        "### Download Pre-Trained YOLOv3 weights for transfer learning"
      ]
    },
    {
      "cell_type": "code",
      "metadata": {
        "id": "xLJXm1WE0Kuj",
        "colab_type": "code",
        "outputId": "abe9472b-fd96-48d4-def6-a34f25e18c0d",
        "colab": {
          "base_uri": "https://localhost:8080/",
          "height": 343
        }
      },
      "source": [
        "#https://github-production-release-asset-2e65be.s3.amazonaws.com/125932201/12701d80-b2ab-11e9-9f56-c06e1dfbec05?X-Amz-Algorithm=AWS4-HMAC-SHA256&X-Amz-Credential=AKIAIWNJYAX4CSVEH53A%2F20191029%2Fus-east-1%2Fs3%2Faws4_request&X-Amz-Date=20191029T092049Z&X-Amz-Expires=300&X-Amz-Signature=2c9d2e1d5850ea3ec042f06855c545c25c5fcee848b944dce270135b8c17c4d1&X-Amz-SignedHeaders=host&actor_id=29234112&response-content-disposition=attachment%3B%20filename%3Dpretrained-yolov3.h5&response-content-type=application%2Foctet-stream\n",
        "%cd data/\n",
        "!wget https://github.com/OlafenwaMoses/ImageAI/releases/download/essential-v4/pretrained-yolov3.h5\n",
        "%cd /content/"
      ],
      "execution_count": 0,
      "outputs": [
        {
          "output_type": "stream",
          "text": [
            "/content/data\n",
            "--2019-10-29 09:21:30--  https://github.com/OlafenwaMoses/ImageAI/releases/download/essential-v4/pretrained-yolov3.h5\n",
            "Resolving github.com (github.com)... 140.82.114.4\n",
            "Connecting to github.com (github.com)|140.82.114.4|:443... connected.\n",
            "HTTP request sent, awaiting response... 302 Found\n",
            "Location: https://github-production-release-asset-2e65be.s3.amazonaws.com/125932201/12701d80-b2ab-11e9-9f56-c06e1dfbec05?X-Amz-Algorithm=AWS4-HMAC-SHA256&X-Amz-Credential=AKIAIWNJYAX4CSVEH53A%2F20191029%2Fus-east-1%2Fs3%2Faws4_request&X-Amz-Date=20191029T092130Z&X-Amz-Expires=300&X-Amz-Signature=0aa815cd6c7fad46b7e98ca957dd79b5d2d9fc8162a149c66a6bd939b03e680f&X-Amz-SignedHeaders=host&actor_id=0&response-content-disposition=attachment%3B%20filename%3Dpretrained-yolov3.h5&response-content-type=application%2Foctet-stream [following]\n",
            "--2019-10-29 09:21:30--  https://github-production-release-asset-2e65be.s3.amazonaws.com/125932201/12701d80-b2ab-11e9-9f56-c06e1dfbec05?X-Amz-Algorithm=AWS4-HMAC-SHA256&X-Amz-Credential=AKIAIWNJYAX4CSVEH53A%2F20191029%2Fus-east-1%2Fs3%2Faws4_request&X-Amz-Date=20191029T092130Z&X-Amz-Expires=300&X-Amz-Signature=0aa815cd6c7fad46b7e98ca957dd79b5d2d9fc8162a149c66a6bd939b03e680f&X-Amz-SignedHeaders=host&actor_id=0&response-content-disposition=attachment%3B%20filename%3Dpretrained-yolov3.h5&response-content-type=application%2Foctet-stream\n",
            "Resolving github-production-release-asset-2e65be.s3.amazonaws.com (github-production-release-asset-2e65be.s3.amazonaws.com)... 52.216.129.11\n",
            "Connecting to github-production-release-asset-2e65be.s3.amazonaws.com (github-production-release-asset-2e65be.s3.amazonaws.com)|52.216.129.11|:443... connected.\n",
            "HTTP request sent, awaiting response... 200 OK\n",
            "Length: 248671664 (237M) [application/octet-stream]\n",
            "Saving to: ‘pretrained-yolov3.h5’\n",
            "\n",
            "pretrained-yolov3.h 100%[===================>] 237.15M  69.0MB/s    in 3.4s    \n",
            "\n",
            "2019-10-29 09:21:34 (69.0 MB/s) - ‘pretrained-yolov3.h5’ saved [248671664/248671664]\n",
            "\n",
            "/content\n"
          ],
          "name": "stdout"
        }
      ]
    },
    {
      "cell_type": "markdown",
      "metadata": {
        "id": "ilpUdAESnPpD",
        "colab_type": "text"
      },
      "source": [
        "### Train Model"
      ]
    },
    {
      "cell_type": "code",
      "metadata": {
        "id": "kaqLP8sOmJ-6",
        "colab_type": "code",
        "outputId": "d1c77329-1b60-4b37-8967-0530eb1074b3",
        "colab": {
          "base_uri": "https://localhost:8080/",
          "height": 445
        }
      },
      "source": [
        "from imageai.Detection.Custom import DetectionModelTrainer\n",
        "\n",
        "trainer = DetectionModelTrainer()\n",
        "trainer.setModelTypeAsYOLOv3()\n",
        "trainer.setDataDirectory(data_directory=\"data\")\n",
        "trainer.setTrainConfig(object_names_array=[\"plasmodium\"], batch_size=4, num_experiments=200, train_from_pretrained_model='./data/pretrained-yolov3.h5')\n",
        "\n",
        "trainer.trainModel()"
      ],
      "execution_count": 0,
      "outputs": [
        {
          "output_type": "stream",
          "text": [
            "Generating anchor boxes for training images and annotation...\n",
            "Average IOU for 9 anchors: 0.96\n",
            "Anchor Boxes generated.\n",
            "Detection configuration saved in  data/json/detection_config.json\n",
            "Training on: \t['plasmodium']\n",
            "Training with Batch Size:  4\n",
            "Number of Experiments:  200\n",
            "Training with transfer learning from pretrained Model\n"
          ],
          "name": "stdout"
        },
        {
          "output_type": "stream",
          "text": [
            "/usr/local/lib/python3.6/dist-packages/keras/callbacks.py:1335: UserWarning: `epsilon` argument is deprecated and will be removed, use `min_delta` instead.\n",
            "  warnings.warn('`epsilon` argument is deprecated and '\n"
          ],
          "name": "stderr"
        },
        {
          "output_type": "stream",
          "text": [
            "Epoch 1/200\n",
            "4632/4632 [==============================] - 6288s 1s/step - loss: 14.0821 - yolo_layer_7_loss: 12.6587 - yolo_layer_8_loss: 0.4870 - yolo_layer_9_loss: 0.9365 - val_loss: 12.0209 - val_yolo_layer_7_loss: 12.0160 - val_yolo_layer_8_loss: 0.0011 - val_yolo_layer_9_loss: 0.0038\n",
            "Epoch 2/200\n",
            "4632/4632 [==============================] - 6110s 1s/step - loss: 10.3765 - yolo_layer_7_loss: 10.3750 - yolo_layer_8_loss: 4.9893e-04 - yolo_layer_9_loss: 0.0011 - val_loss: 10.8461 - val_yolo_layer_7_loss: 10.8455 - val_yolo_layer_8_loss: 1.8135e-04 - val_yolo_layer_9_loss: 3.6427e-04\n",
            "Epoch 3/200\n",
            "4632/4632 [==============================] - 6051s 1s/step - loss: 9.8156 - yolo_layer_7_loss: 9.8152 - yolo_layer_8_loss: 1.2940e-04 - yolo_layer_9_loss: 2.0879e-04 - val_loss: 10.7831 - val_yolo_layer_7_loss: 10.7829 - val_yolo_layer_8_loss: 7.2118e-05 - val_yolo_layer_9_loss: 1.2143e-04\n",
            "Epoch 4/200\n",
            "4632/4632 [==============================] - 6072s 1s/step - loss: 9.4670 - yolo_layer_7_loss: 9.4668 - yolo_layer_8_loss: 6.4030e-05 - yolo_layer_9_loss: 9.0184e-05 - val_loss: 10.7459 - val_yolo_layer_7_loss: 10.7458 - val_yolo_layer_8_loss: 4.4788e-05 - val_yolo_layer_9_loss: 6.9398e-05\n",
            "Epoch 5/200\n",
            "4632/4632 [==============================] - 6055s 1s/step - loss: 9.2720 - yolo_layer_7_loss: 9.2719 - yolo_layer_8_loss: 4.1976e-05 - yolo_layer_9_loss: 5.5873e-05 - val_loss: 10.2132 - val_yolo_layer_7_loss: 10.2131 - val_yolo_layer_8_loss: 3.0568e-05 - val_yolo_layer_9_loss: 4.3454e-05\n",
            "Epoch 6/200\n",
            "4632/4632 [==============================] - 6157s 1s/step - loss: 9.1783 - yolo_layer_7_loss: 9.1783 - yolo_layer_8_loss: 3.1061e-05 - yolo_layer_9_loss: 4.0417e-05 - val_loss: 11.2590 - val_yolo_layer_7_loss: 11.2589 - val_yolo_layer_8_loss: 2.4745e-05 - val_yolo_layer_9_loss: 3.4325e-05\n",
            "Epoch 7/200\n",
            "2660/4632 [================>.............] - ETA: 42:20 - loss: 9.0553 - yolo_layer_7_loss: 9.0552 - yolo_layer_8_loss: 2.4331e-05 - yolo_layer_9_loss: 3.1945e-05"
          ],
          "name": "stdout"
        }
      ]
    },
    {
      "cell_type": "markdown",
      "metadata": {
        "id": "7ehEilE_nRf5",
        "colab_type": "text"
      },
      "source": [
        "### Evaluate Model"
      ]
    },
    {
      "cell_type": "code",
      "metadata": {
        "id": "i633k48mnS1A",
        "colab_type": "code",
        "colab": {}
      },
      "source": [
        "from imageai.Detection.Custom import DetectionModelTrainer\n",
        "\n",
        "trainer = DetectionModelTrainer()\n",
        "trainer.setModelTypeAsYOLOv3()\n",
        "trainer.setDataDirectory(data_directory=\"data\")\n",
        "metrics = trainer.evaluateModel(model_path=\"data/models\", json_path=\"data/json/detection_config.json\", iou_threshold=0.5, object_threshold=0.3, nms_threshold=0.5)"
      ],
      "execution_count": 0,
      "outputs": []
    }
  ]
}
generated by cgit v1.2.3 (git 2.25.1) at 2024-11-21 11:41:43 +0000