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authorNavan Chauhan <navanchauhan@gmail.com>2020-07-02 20:48:33 +0530
committerNavan Chauhan <navanchauhan@gmail.com>2020-07-02 20:48:33 +0530
commit4be08f7bdd77991e9e453c1cda863c3f20c338d5 (patch)
tree083e8e91622221185a28fd50754abc2f86b1df43 /plip/test/test_pi_stacking.py
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diff --git a/plip/test/test_pi_stacking.py b/plip/test/test_pi_stacking.py
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+import unittest
+
+from plip.basic import config
+from plip.structure.preparation import PDBComplex, PLInteraction
+
+
+def characterize_complex(pdb_file: str, binding_site_id: str) -> PLInteraction:
+ pdb_complex = PDBComplex()
+ pdb_complex.load_pdb(pdb_file)
+ for ligand in pdb_complex.ligands:
+ if ':'.join([ligand.hetid, ligand.chain, str(ligand.position)]) == binding_site_id:
+ pdb_complex.characterize_complex(ligand)
+ return pdb_complex.interaction_sets[binding_site_id]
+
+
+class RingDetectionTest(unittest.TestCase):
+
+ def test_consistent_ring_detection(self):
+ config.NOHYDRO = True
+ angles = set()
+ for i in range(0, 10):
+ interactions = characterize_complex('./pdb/4dst_protonated.pdb', 'GCP:A:202')
+ angles.add(interactions.pistacking[0].angle)
+ self.assertTrue(len(angles) == 1)
+ config.NOHYDRO = False