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author | deepsource-autofix[bot] <62050782+deepsource-autofix[bot]@users.noreply.github.com> | 2020-07-07 14:55:17 +0000 |
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committer | GitHub <noreply@github.com> | 2020-07-07 14:55:17 +0000 |
commit | 0d135d611506e81d322596c7827b08bbfd3b7c08 (patch) | |
tree | a281b8e1f140ad3de77d818747fce03bcfa5b77b /scripts/get_dock_score.py | |
parent | 7059ee2a4ced23e467741cc846eb185886ffca38 (diff) |
Format code with Blackdeepsource-transform-b65b5545
Diffstat (limited to 'scripts/get_dock_score.py')
-rw-r--r-- | scripts/get_dock_score.py | 20 |
1 files changed, 13 insertions, 7 deletions
diff --git a/scripts/get_dock_score.py b/scripts/get_dock_score.py index c8b87d5..1cc0412 100644 --- a/scripts/get_dock_score.py +++ b/scripts/get_dock_score.py @@ -3,8 +3,8 @@ import argparse parser = argparse.ArgumentParser(description="Get Docking Score") -parser.add_argument("-p","--protein",help="Path to protein file") -parser.add_argument("-l","--ligand",help="Path to ligand_out file") +parser.add_argument("-p", "--protein", help="Path to protein file") +parser.add_argument("-l", "--ligand", help="Path to ligand_out file") args = parser.parse_args() @@ -21,7 +21,13 @@ ligand = args.ligand from os.path import basename -print("# " + str(basename(protein)).replace(".pdbqt","") + "-" + str(basename(ligand)).replace("_out.pdbqt",""), end="\n\n") +print( + "# " + + str(basename(protein)).replace(".pdbqt", "") + + "-" + + str(basename(ligand)).replace("_out.pdbqt", ""), + end="\n\n", +) from tabulate import tabulate @@ -31,7 +37,7 @@ results = [] i = 1 for line in lines: ta = [] - if line.find('REMARK VINA') == 0 and line.split()[3] != "": + if line.find("REMARK VINA") == 0 and line.split()[3] != "": l = line.split() ta.append(i) ta.append(l[3]) @@ -41,6 +47,6 @@ for line in lines: if ta != []: results.append(ta) -print("## Docking Scores",end="\n\n") -print(tabulate(results,headers=["No.","Affinity","rmsd l.b","rmsd u.b"])) -print("",end="\n\n") +print("## Docking Scores", end="\n\n") +print(tabulate(results, headers=["No.", "Affinity", "rmsd l.b", "rmsd u.b"])) +print("", end="\n\n") |