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Diffstat (limited to 'plip/test/test_command_line.py')
-rw-r--r-- | plip/test/test_command_line.py | 48 |
1 files changed, 48 insertions, 0 deletions
diff --git a/plip/test/test_command_line.py b/plip/test/test_command_line.py new file mode 100644 index 0000000..5d8e8e5 --- /dev/null +++ b/plip/test/test_command_line.py @@ -0,0 +1,48 @@ +""" +Protein-Ligand Interaction Profiler - Analyze and visualize protein-ligand interactions in PDB files. +test_command_line.py - Unit Tests for special cases. +""" +import os +import subprocess +import sys +import tempfile +import unittest + + +class CommandLineTest(unittest.TestCase): + """Checks special and extreme cases for input files.""" + + def setUp(self) -> None: + self.tmp_dir = tempfile.TemporaryDirectory() + + def tearDown(self) -> None: + self.tmp_dir.cleanup() + + def test_empty_input_file(self): + """Input file is empty.""" + exitcode = subprocess.call(f'{sys.executable} ../plipcmd.py -f ./special/empty.pdb -o {self.tmp_dir.name}', + shell=True) + self.assertEqual(exitcode, 1) + + def test_invalid_pdb_id(self): + """A PDB ID with no valid PDB record is provided.""" + exitcode = subprocess.call(f'{sys.executable} ../plipcmd.py -i xx1x -o {self.tmp_dir.name}', shell=True) + self.assertEqual(exitcode, 1) + + def test_invalid_input_file(self): + """A file is provided which is not a PDB file.""" + exitcode = subprocess.call(f'{sys.executable} ../plipcmd.py -f ./special/non-pdb.pdb -o {self.tmp_dir.name}', + shell=True) + self.assertEqual(exitcode, 1) + + def test_pdb_format_not_available(self): + """A valid PDB ID is provided, but there is no entry in PDB format from wwPDB""" + exitcode = subprocess.call(f'{sys.executable} ../plipcmd.py -i 4v59 -o {self.tmp_dir.name}', shell=True) + self.assertEqual(exitcode, 1) + + def test_valid_pdb(self): + """A PDB ID with no valid PDB record is provided.""" + exitcode = subprocess.call(f'{sys.executable} ../plipcmd.py -x -f ./pdb/1eve.pdb -o {self.tmp_dir.name}', + shell=True) + self.assertEqual(len(os.listdir(self.tmp_dir.name)), 2) + self.assertEqual(exitcode, 0) |