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diff --git a/docs/posts/2020-06-02-Compiling-AutoDock-Vina-on-iOS.html b/docs/posts/2020-06-02-Compiling-AutoDock-Vina-on-iOS.html deleted file mode 100644 index 10acac3..0000000 --- a/docs/posts/2020-06-02-Compiling-AutoDock-Vina-on-iOS.html +++ /dev/null @@ -1,173 +0,0 @@ -<!DOCTYPE html> -<html lang="en"> -<head> - - <meta http-equiv="X-UA-Compatible" content="IE=edge"> - <meta http-equiv="content-type" content="text/html; charset=utf-8"> - <meta name="viewport" content="width=device-width, initial-scale=1.0"> - <meta name="theme-color" content="#6a9fb5"> - - <title>Compiling AutoDock Vina on iOS</title> - - <!-- - <link rel="stylesheet" href="https://unpkg.com/latex.css/style.min.css" /> - --> - - <link rel="stylesheet" href="/assets/c-hyde.css"> - - <link rel="stylesheet" href="https://fonts.googleapis.com/css?family=Abril+Fatface"> - <link rel="stylesheet" href="https://fonts.googleapis.com/css?family=PT+Sans:400,400italic,700"> - - <link rel="stylesheet" href="/assets/main.css"> - <meta name="viewport" content="width=device-width, initial-scale=1.0"> - <meta name="og:site_name" content="Navan Chauhan"> - <link rel="canonical" href="https://web.navan.dev/posts/2020-06-02-Compiling-AutoDock-Vina-on-iOS.html"> - <meta name="twitter:url" content="https://web.navan.dev/posts/2020-06-02-Compiling-AutoDock-Vina-on-iOS.html"> - <meta name="og:url" content="https://web.navan.dev/posts/2020-06-02-Compiling-AutoDock-Vina-on-iOS.html"> - <meta name="twitter:title" content="Compiling AutoDock Vina on iOS"> - <meta name="og:title" content="Compiling AutoDock Vina on iOS"> - <meta name="description" content="Compiling AutoDock Vina on iOS"> - <meta name="twitter:description" content="Compiling AutoDock Vina on iOS"> - <meta name="og:description" content="Compiling AutoDock Vina on iOS"> - <meta name="twitter:card" content="summary_large_image"> - <meta name="viewport" content="width=device-width, initial-scale=1.0"> - <link rel="shortcut icon" href="/images/favicon.png" type="image/png"> - <link href="/feed.rss" type="application/atom+xml" rel="alternate" title="Sitewide Atom feed"> - <meta name="twitter:image" content="https://web.navan.dev/images/opengraph/posts/2020-06-02-Compiling-AutoDock-Vina-on-iOS.png"> - <meta name="og:image" content="https://web.navan.dev/images/opengraph/posts/2020-06-02-Compiling-AutoDock-Vina-on-iOS.png"> - <meta name="google-site-verification" content="LVeSZxz-QskhbEjHxOi7-BM5dDxTg53x2TwrjFxfL0k"> - <script data-goatcounter="https://navanchauhan.goatcounter.com/count" - async src="//gc.zgo.at/count.js"></script> - <script defer data-domain="web.navan.dev" src="https://plausible.io/js/plausible.js"></script> - <link rel="manifest" href="/manifest.json"> - -</head> -<body class="theme-base-0d"> - <div class="sidebar"> - <div class="container sidebar-sticky"> - <div class="sidebar-about"> - <h1><a href="/">Navan</a></h1> - <p class="lead" id="random-lead">Alea iacta est.</p> - </div> - - <ul class="sidebar-nav"> - <li><a class="sidebar-nav-item" href="/about/">about/links</a></li> - <li><a class="sidebar-nav-item" href="/posts/">posts</a></li> - <li><a class="sidebar-nav-item" href="/3D-Designs/">3D designs</a></li> - <li><a class="sidebar-nav-item" href="/feed.rss">RSS Feed</a></li> - <li><a class="sidebar-nav-item" href="/colophon/">colophon</a></li> - </ul> - <div class="copyright"><p>© 2019-2024. Navan Chauhan <br> <a href="/feed.rss">RSS</a></p></div> - </div> -</div> - -<script> -let phrases = [ - "Something Funny", "Veni, vidi, vici", "Alea iacta est", "In vino veritas", "Acta, non verba", "Castigat ridendo mores", - "Cui bono?", "Memento vivere", "अहम् ब्रह्मास्मि", "अनुगच्छतु प्रवाहं", "चरन्मार्गान्विजानाति", "coq de cheval", "我愛啤酒" - ]; - -let new_phrase = phrases[Math.floor(Math.random()*phrases.length)]; - -let lead = document.getElementById("random-lead"); -lead.innerText = new_phrase; -</script> - <div class="content container"> - - <div class="post"> - <h1 id="compiling-autodock-vina-on-ios">Compiling AutoDock Vina on iOS</h1> - -<p>Why? Because I can.</p> - -<h2 id="installing-makedepend">Installing makedepend</h2> - -<p><code>makedepend</code> is a Unix tool used to generate dependencies of C source files. Most modern programs do not use this anymore, but then again AutoDock Vina's source code hasn't been changed since 2011. The first hurdle came when I saw that there was no makedepend command, neither was there any package on any development repository for iOS. So, I tracked down the original source code for <code>makedepend</code> (https://github.com/DerellLicht/makedepend). According to the repository this is actually the source code for the makedepend utility that came with some XWindows distribution back around Y2K. I am pretty sure there is a problem with my current compiler configuration because I had to manually edit the <code>Makefile</code> to provide the path to the iOS SDKs using the <code>-isysroot</code> flag.</p> - -<h2 id="editing-the-makefile">Editing the Makefile</h2> - -<p>Original Makefile ( I used the provided mac Makefile base )</p> - -<pre><code>BASE=/usr/local -BOOST_VERSION=1_41 -BOOST_INCLUDE = $(BASE)/include -C_PLATFORM=-arch i386 -arch ppc -isysroot /Developer/SDKs/MacOSX10.5.sdk -mmacosx-version-min=10.4 -GPP=/usr/bin/g++ -C_OPTIONS= -O3 -DNDEBUG -BOOST_LIB_VERSION= - -include ../../makefile_common -</code></pre> - -<p>I installed Boost 1.68.0-1 from Sam Bingner's repository. ( Otherwise I would have had to compile boost too 😫 )</p> - -<p>Edited Makefile</p> - -<pre><code>BASE=/usr -BOOST_VERSION=1_68 -BOOST_INCLUDE = $(BASE)/include -C_PLATFORM=-arch arm64 -isysroot /var/sdks/Latest.sdk -GPP=/usr/bin/g++ -C_OPTIONS= -O3 -DNDEBUG -BOOST_LIB_VERSION= - -include ../../makefile_common - -</code></pre> - -<h2 id="updating-the-source-code">Updating the Source Code</h2> - -<p>Of course since Boost 1.41 many things have been added and deprecated, that is why I had to edit the source code to make it work with version 1.68</p> - -<h3 id="error-1-no-matching-constructor">Error 1 - No Matching Constructor</h3> - -<pre><code>../../../src/main/main.cpp:50:9: error: no matching constructor for initialization of 'path' (aka 'boost::filesystem::path') -return path(str, boost::filesystem::native); -</code></pre> - -<p>This was an easy fix, I just commented this and added a return statement to return the path</p> - -<pre><code>return path(str) -</code></pre> - -<h3 id="error-2-no-member-named-native_file_string">Error 2 - No Member Named 'native<em>file</em>string'</h3> - -<pre><code>../../../src/main/main.cpp:665:57: error: no member named 'native_file_string' in 'boost::filesystem::path' - std::cerr << "\n\nError: could not open \"" << e.name.native_file_string() << "\" for " << (e.in ? "reading" : "writing") << ".\n"; - ~~~~~~ ^ -../../../src/main/main.cpp:677:80: error: no member named 'native_file_string' in 'boost::filesystem::path' - std::cerr << "\n\nParse error on line " << e.line << " in file \"" << e.file.native_file_string() << "\": " << e.reason << '\n'; - ~~~~~~ ^ -2 errors generated. -</code></pre> - -<p>Turns out <code>native_file_string</code> was deprecated in Boost 1.57 and replaced with just <code>string</code></p> - -<h3 id="error-3-library-not-found">Error 3 - Library Not Found</h3> - -<p>This one still boggles me because there was no reason for it to not work, as a workaround I downloaded the DEB, extracted it and used that path for compiling.</p> - -<h3 id="error-4-no-member-named-native_file_string-again">Error 4 - No Member Named 'native<em>file</em>string' Again.</h3> - -<p>But, this time in another file and I quickly fixed it</p> - -<h2 id="moment-of-truth">Moment of Truth</h2> - -<p>Obviously it was working on my iPad, but would it work on another device? I transferred the compiled binary and </p> - -<p><img src="/assets/posts/autodock-vina/s1.png" alt=""AutoDock Vina running on my iPhone"" /></p> - -<p>The package is available on my repository and only depends on boost. ( Both, Vina and Vina-Split are part of the package)</p> - - </div> - <blockquote>If you have scrolled this far, consider subscribing to my mailing list <a href="https://listmonk.navan.dev/subscription/form">here.</a> You can subscribe to either a specific type of post you are interested in, or subscribe to everything with the "Everything" list.</blockquote> - <script data-isso="https://comments.navan.dev/" - src="https://comments.navan.dev/js/embed.min.js"></script> - <div id="isso-thread"> - <noscript>Javascript needs to be activated to view comments.</noscript> - </div> - - </div> - <script src="assets/manup.min.js"></script> - <script src="/pwabuilder-sw-register.js"></script> -</body> -</html>
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