blob: aecb6e658a71e8284e34b00bf190830a7bb3b650 (
plain)
1
2
3
4
5
6
7
8
9
10
11
12
13
14
15
16
|
<!DOCTYPE html><html lang="en"><head><meta charset="UTF-8"/><meta name="og:site_name" content="Navan Chauhan"/><link rel="canonical" href="https://navanchauhan.github.io/posts/2020-04-13-Fixing-X11-Error-AmberTools-macOS"/><meta name="twitter:url" content="https://navanchauhan.github.io/posts/2020-04-13-Fixing-X11-Error-AmberTools-macOS"/><meta name="og:url" content="https://navanchauhan.github.io/posts/2020-04-13-Fixing-X11-Error-AmberTools-macOS"/><title>Fixing X11 Error on macOS Catalina for AmberTools 18/19 | Navan Chauhan</title><meta name="twitter:title" content="Fixing X11 Error on macOS Catalina for AmberTools 18/19 | Navan Chauhan"/><meta name="og:title" content="Fixing X11 Error on macOS Catalina for AmberTools 18/19 | Navan Chauhan"/><meta name="description" content="Fixing Could not find the X11 libraries; you may need to edit config.h, AmberTools macOS Catalina"/><meta name="twitter:description" content="Fixing Could not find the X11 libraries; you may need to edit config.h, AmberTools macOS Catalina"/><meta name="og:description" content="Fixing Could not find the X11 libraries; you may need to edit config.h, AmberTools macOS Catalina"/><meta name="twitter:card" content="summary"/><link rel="stylesheet" href="/styles.css" type="text/css"/><meta name="viewport" content="width=device-width, initial-scale=1.0"/><link rel="shortcut icon" href="/images/favicon.png" type="image/png"/><link rel="alternate" href="/feed.rss" type="application/rss+xml" title="Subscribe to Navan Chauhan"/><meta name="twitter:image" content="https://navanchauhan.github.io/images/logo.png"/><meta name="og:image" content="https://navanchauhan.github.io/images/logo.png"/></head><head><script async src="//gc.zgo.at/count.js" data-goatcounter="https://navanchauhan.goatcounter.com/count"></script></head><body class="item-page"><header><div class="wrapper"><a class="site-name" href="/">Navan Chauhan</a><nav><ul><li><a href="/about">About Me</a></li><li><a class="selected" href="/posts">Posts</a></li><li><a href="/publications">Publications</a></li><li><a href="/assets/résumé.pdf">Résumé</a></li><li><a href="https://navanchauhan.github.io/repo">Repo</a></li><li><a href="/feed.rss">RSS</a></li></ul></nav></div></header><div class="wrapper"><article><div class="content"><span class="reading-time">2 minute read</span><span class="reading-time">Created on April 13, 2020</span><span class="reading-time">Last modified on September 15, 2020</span><h1>Fixing X11 Error on macOS Catalina for AmberTools 18/19</h1><p>I was trying to install AmberTools on my macOS Catalina Installation. Running <code>./configure -macAccelerate clang</code> gave me an error that it could not find X11 libraries, even though <code>locate libXt</code> showed that my installation was correct.</p><p>Error:</p><pre><code><div class="highlight"><span></span>Could not find the X11 libraries<span class="p">;</span> you may need to edit config.h
to <span class="nb">set</span> the XHOME and XLIBS variables.
Error: The X11 libraries are not in the usual location !
To search <span class="k">for</span> them try the command: locate libXt
On new Fedora OS<span class="s1">'s install the libXt-devel libXext-devel</span>
<span class="s1"> libX11-devel libICE-devel libSM-devel packages.</span>
<span class="s1"> On old Fedora OS'</span>s install the xorg-x11-devel package.
On RedHat OS<span class="s1">'s install the XFree86-devel package.</span>
<span class="s1"> On Ubuntu OS'</span>s install the xorg-dev and xserver-xorg packages.
...more info <span class="k">for</span> various linuxes at ambermd.org/ubuntu.html
To build Amber without XLEaP, re-run configure with <span class="err">'</span>-noX11:
./configure -noX11 --with-python /usr/local/bin/python3 -macAccelerate clang
Configure failed due to the errors above!
</div></code></pre><p>I searched on Google for a solution. Sadly, there was not even a single thread which had a solution about this error.</p><h2>The Fix</h2><p>Simply reinstalling XQuartz using homebrew fixed the error <code>brew cask reinstall xquartz</code></p><p>If you do not have XQuartz installed, you need to run <code>brew cask install xquartz</code></p></div><span>Tagged with: </span><ul class="tag-list"><li><a href="/tags/moleculardynamics">Molecular-Dynamics</a></li><li><a href="/tags/macos">macOS</a></li></ul></article></div><footer><p>Made with ❤️ using <a href="https://github.com/johnsundell/publish">Publish</a></p><p><a href="/feed.rss">RSS feed</a></p></footer></body></html>
|
